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BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8irf:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    2 8irf:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    3 8irf:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    4 8irf:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    5 8irf:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    6 8irf:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    7 8irf:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    8 8irf:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    9 8irf:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    10 8irf:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    11 8irf:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    12 8irf:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    13 8irf:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    14 8irf:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    15 8irf:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    16 8irf:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    17 8irf:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    18 8irf:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    19 8irf:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    20 8irf:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    21 8irf:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    22 8irf:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    23 8irf:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    24 8irf:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    25 8irf:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    26 8irf:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    27 8irf:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    28 8irf:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    29 8irf:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    30 8irf:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    31 8irf:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    32 8irf:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    33 8irf:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    34 8irf:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    35 8irf:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    36 8irf:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    37 8irf:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    38 8irf:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    39 8irf:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    40 8irf:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41 8irf:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    42 8irf:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43 8irf:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    44 8irf:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    45 8irf:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    46 8irf:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    47 8irf:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    48 8irf:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    49 8irf:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    50 8irf:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    51 8irf:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    52 8irf:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    53 8irf:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    54 8irf:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    55 8irf:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    56 8irf:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    57 8irf:K (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    58 8irf:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    59 8irf:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    60 8irf:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    61 8irf:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    62 8irf:Z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    63 8irf:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    64 8irf:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    65 8irf:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    66 8irf:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    67 8irf:a (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    68 8irf:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    69 8irf:a (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    70 8irf:a (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    71 8irf:a (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    72 8irf:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    73 8irf:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    74 8irf:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    75 8irf:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    76 8irf:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    77 8irf:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    78 8irf:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    79 8irf:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    80 8irf:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    81 8irf:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    82 8irf:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    83 8irf:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    84 8irf:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    85 8irf:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    86 8irf:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    87 8irf:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    88 8irf:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    89 8irf:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    90 8irf:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    91 8irf:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    92 8irf:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    93 8irf:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    94 8irf:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    95 8irf:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    96 8irf:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    97 8irf:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    98 8irf:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    99 8irf:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    100 8irf:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    101 8irf:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    102 8irf:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    103 8irf:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    104 8irf:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    105 8irf:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    106 8irf:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    107 8irf:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    108 8irf:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    109 8irf:d (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    110 8irf:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    111 8irf:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    112 8irf:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    113 8irf:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    114 8irf:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    115 8irf:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    116 8irf:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    117 8irf:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    118 8irf:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    119 8irf:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    120 8irf:k (2.25) BS01 peptide ? GO:0005737 ... P19054 38297122
    121 8irf:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    122 8irf:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    123 8irf:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    124 8irf:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    125 8irf:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    126 8irf:z (2.25) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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