Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ic1:A (1.8) BS01 BXY N/A N/A N/A 37726269
    2 8ic1:A (1.8) BS02 BXY N/A N/A N/A 37726269
    3 8ic1:A (1.8) BS03 BXY N/A N/A N/A 37726269
    4 8ic1:A (1.8) BS04 BXY N/A N/A N/A 37726269
    5 8ic1:A (1.8) BS05 BXY N/A N/A N/A 37726269
    6 8ic1:A (1.8) BS06 BXY N/A N/A N/A 37726269
    7 8ic1:A (1.8) BS07 BXY N/A N/A N/A 37726269
    8 8ic1:A (1.8) BS08 BXY N/A N/A N/A 37726269
    9 8ic1:A (1.8) BS09 CA N/A N/A N/A 37726269
    10 8ic1:A (1.8) BS10 OYO N/A N/A N/A 37726269
    11 8ic1:B (1.8) BS01 BXY N/A N/A N/A 37726269
    12 8ic1:B (1.8) BS02 BXY N/A N/A N/A 37726269
    13 8ic1:B (1.8) BS03 BXY N/A N/A N/A 37726269
    14 8ic1:B (1.8) BS04 CA N/A N/A N/A 37726269
    15 8ic1:B (1.8) BS05 OYO N/A N/A N/A 37726269
    16 8ic1:C (1.8) BS01 BXY N/A N/A N/A 37726269
    17 8ic1:C (1.8) BS02 BXY N/A N/A N/A 37726269
    18 8ic1:C (1.8) BS03 BXY N/A N/A N/A 37726269
    19 8ic1:C (1.8) BS04 BXY N/A N/A N/A 37726269
    20 8ic1:C (1.8) BS05 BXY N/A N/A N/A 37726269
    21 8ic1:C (1.8) BS06 BXY N/A N/A N/A 37726269
    22 8ic1:C (1.8) BS07 BXY N/A N/A N/A 37726269
    23 8ic1:C (1.8) BS08 BXY N/A N/A N/A 37726269
    24 8ic1:C (1.8) BS09 CA N/A N/A N/A 37726269
    25 8ic1:C (1.8) BS10 OYO N/A N/A N/A 37726269
    26 8ic1:D (1.8) BS01 BXY N/A N/A N/A 37726269
    27 8ic1:D (1.8) BS02 BXY N/A N/A N/A 37726269
    28 8ic1:D (1.8) BS03 BXY N/A N/A N/A 37726269
    29 8ic1:D (1.8) BS04 CA N/A N/A N/A 37726269
    30 8ic1:D (1.8) BS05 OYO N/A N/A N/A 37726269

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218