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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4zla:A (1.9) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    2 4zla:A (1.9) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    3 4zla:A (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    4 4zla:A (1.9) BS04 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    5 4zla:A (1.9) BS05 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008 MOAD: ic50=49.9nM
    PDBbind: -logKd/Ki=7.30, IC50=49.9nM
    6 4zla:B (1.9) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    7 4zla:B (1.9) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    8 4zla:B (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    9 4zla:B (1.9) BS04 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    10 4zla:B (1.9) BS05 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008 MOAD: ic50=49.9nM
    PDBbind: -logKd/Ki=7.30, IC50=49.9nM
    11 4zla:C (1.9) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    12 4zla:C (1.9) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    13 4zla:C (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    14 4zla:C (1.9) BS04 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    15 4zla:C (1.9) BS05 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008 MOAD: ic50=49.9nM
    16 4zla:D (1.9) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    17 4zla:D (1.9) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    18 4zla:D (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    19 4zla:D (1.9) BS04 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    20 4zla:D (1.9) BS05 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008 MOAD: ic50=49.9nM
    21 4zla:E (1.9) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    22 4zla:E (1.9) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    23 4zla:E (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    24 4zla:E (1.9) BS04 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    25 4zla:E (1.9) BS05 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008 MOAD: ic50=49.9nM
    PDBbind: -logKd/Ki=7.30, IC50=49.9nM
    26 4zla:F (1.9) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    27 4zla:F (1.9) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    28 4zla:F (1.9) BS03 NA 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    29 4zla:F (1.9) BS04 BCT 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008
    30 4zla:F (1.9) BS05 BES 3.4.11.1
    3.4.11.10    		 GO:0004177 ... O25294 26616008 MOAD: ic50=49.9nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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