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BioLiP
Download all results in tab-seperated text for 124 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4tni:A (4.6) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    2 4tni:A (4.6) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    3 4tni:A (4.6) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    4 4tni:A (4.6) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    5 4tni:A (4.6) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    6 4tni:A (4.6) BS06 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    7 4tni:A (4.6) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    8 4tni:A (4.6) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    9 4tni:A (4.6) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    10 4tni:A (4.6) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 25006873
    11 4tni:B (4.6) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    12 4tni:B (4.6) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    13 4tni:B (4.6) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    14 4tni:B (4.6) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    15 4tni:B (4.6) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    16 4tni:B (4.6) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    17 4tni:B (4.6) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    18 4tni:B (4.6) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    19 4tni:B (4.6) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    20 4tni:B (4.6) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    21 4tni:B (4.6) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    22 4tni:B (4.6) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    23 4tni:B (4.6) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    24 4tni:B (4.6) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    25 4tni:B (4.6) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    26 4tni:B (4.6) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    27 4tni:C (4.6) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    28 4tni:C (4.6) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    29 4tni:C (4.6) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    30 4tni:C (4.6) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    31 4tni:C (4.6) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    32 4tni:C (4.6) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    33 4tni:C (4.6) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    34 4tni:C (4.6) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    35 4tni:C (4.6) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    36 4tni:C (4.6) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    37 4tni:C (4.6) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    38 4tni:C (4.6) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    39 4tni:C (4.6) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    40 4tni:D (4.6) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    41 4tni:D (4.6) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    42 4tni:D (4.6) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    43 4tni:D (4.6) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    44 4tni:D (4.6) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    45 4tni:D (4.6) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    46 4tni:D (4.6) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    47 4tni:D (4.6) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    48 4tni:D (4.6) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    49 4tni:E (4.6) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    50 4tni:E (4.6) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    51 4tni:F (4.6) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    52 4tni:H (4.6) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    53 4tni:H (4.6) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    54 4tni:H (4.6) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    55 4tni:I (4.6) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    56 4tni:K (4.6) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    57 4tni:K (4.6) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    58 4tni:K (4.6) BS03 CA ? GO:0005737 ... Q9F1K9 25006873
    59 4tni:O (4.6) BS01 CA ? GO:0009654 ... P0A431 25006873
    60 4tni:V (4.6) BS01 HEM ? GO:0005506 ... P0A386 25006873
    61 4tni:Z (4.6) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    62 4tni:Z (4.6) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    63 4tni:a (4.6) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    64 4tni:a (4.6) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    65 4tni:a (4.6) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    66 4tni:a (4.6) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    67 4tni:a (4.6) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    68 4tni:a (4.6) BS06 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    69 4tni:a (4.6) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    70 4tni:a (4.6) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    71 4tni:a (4.6) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    72 4tni:b (4.6) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    73 4tni:b (4.6) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    74 4tni:b (4.6) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    75 4tni:b (4.6) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    76 4tni:b (4.6) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    77 4tni:b (4.6) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    78 4tni:b (4.6) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    79 4tni:b (4.6) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    80 4tni:b (4.6) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    81 4tni:b (4.6) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    82 4tni:b (4.6) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    83 4tni:b (4.6) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    84 4tni:b (4.6) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    85 4tni:b (4.6) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    86 4tni:b (4.6) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    87 4tni:b (4.6) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    88 4tni:c (4.6) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    89 4tni:c (4.6) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    90 4tni:c (4.6) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    91 4tni:c (4.6) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    92 4tni:c (4.6) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    93 4tni:c (4.6) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    94 4tni:c (4.6) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    95 4tni:c (4.6) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    96 4tni:c (4.6) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    97 4tni:c (4.6) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    98 4tni:c (4.6) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    99 4tni:c (4.6) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    100 4tni:c (4.6) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    101 4tni:d (4.6) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    102 4tni:d (4.6) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    103 4tni:d (4.6) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    104 4tni:d (4.6) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    105 4tni:d (4.6) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    106 4tni:d (4.6) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    107 4tni:d (4.6) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    108 4tni:d (4.6) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    109 4tni:d (4.6) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    110 4tni:e (4.6) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    111 4tni:e (4.6) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    112 4tni:f (4.6) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    113 4tni:h (4.6) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    114 4tni:h (4.6) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    115 4tni:h (4.6) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    116 4tni:i (4.6) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    117 4tni:k (4.6) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    118 4tni:k (4.6) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    119 4tni:k (4.6) BS03 CLA ? GO:0005737 ... Q9F1K9 25006873
    120 4tni:k (4.6) BS04 CA ? GO:0005737 ... Q9F1K9 25006873
    121 4tni:o (4.6) BS01 CA ? GO:0009654 ... P0A431 25006873
    122 4tni:v (4.6) BS01 HEM ? GO:0005506 ... P0A386 25006873
    123 4tni:z (4.6) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    124 4tni:z (4.6) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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