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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1a1c:A (2.4) BS01 peptide 2.7.10.2 N/A P12931 9174343
    202 1a1c:B (2.4) BS01 peptide 2.7.10.2 N/A P12931 9174343
    203 1a1e:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    204 1a1e:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    205 1a1f:A (2.1) BS01 dna ? N/A P08046 9562555
    206 1a1f:A (2.1) BS02 dna ? N/A P08046 9562555
    207 1a1f:A (2.1) BS03 ZN ? N/A P08046 9562555
    208 1a1f:A (2.1) BS04 ZN ? N/A P08046 9562555
    209 1a1f:A (2.1) BS05 ZN ? N/A P08046 9562555
    210 1a1g:A (1.9) BS01 dna ? N/A P08046 9562555
    211 1a1g:A (1.9) BS02 dna ? N/A P08046 9562555
    212 1a1g:A (1.9) BS03 ZN ? N/A P08046 9562555
    213 1a1g:A (1.9) BS04 ZN ? N/A P08046 9562555
    214 1a1g:A (1.9) BS05 ZN ? N/A P08046 9562555
    215 1a1h:A (1.6) BS01 dna ? N/A P08046 9562555
    216 1a1h:A (1.6) BS02 dna ? N/A P08046 9562555
    217 1a1h:A (1.6) BS03 ZN ? N/A P08046 9562555
    218 1a1h:A (1.6) BS04 ZN ? N/A P08046 9562555
    219 1a1h:A (1.6) BS05 ZN ? N/A P08046 9562555
    220 1a1i:A (1.6) BS01 dna ? N/A P08046 9562555
    221 1a1i:A (1.6) BS02 dna ? N/A P08046 9562555
    222 1a1i:A (1.6) BS03 ZN ? N/A P08046 9562555
    223 1a1i:A (1.6) BS04 ZN ? N/A P08046 9562555
    224 1a1i:A (1.6) BS05 ZN ? N/A P08046 9562555
    225 1a1j:A (2.0) BS01 dna ? N/A P08046 9562555
    226 1a1j:A (2.0) BS02 dna ? N/A P08046 9562555
    227 1a1j:A (2.0) BS03 ZN ? N/A P08046 9562555
    228 1a1j:A (2.0) BS04 ZN ? N/A P08046 9562555
    229 1a1j:A (2.0) BS05 ZN ? N/A P08046 9562555
    230 1a1k:A (1.9) BS01 dna ? N/A P08046 9562555
    231 1a1k:A (1.9) BS02 dna ? N/A P08046 9562555
    232 1a1k:A (1.9) BS03 ZN ? N/A P08046 9562555
    233 1a1k:A (1.9) BS04 ZN ? N/A P08046 9562555
    234 1a1k:A (1.9) BS05 ZN ? N/A P08046 9562555
    235 1a1l:A (2.3) BS01 dna ? N/A P08046 9562555
    236 1a1l:A (2.3) BS02 dna ? N/A P08046 9562555
    237 1a1l:A (2.3) BS03 ZN ? N/A P08046 9562555
    238 1a1l:A (2.3) BS04 ZN ? N/A P08046 9562555
    239 1a1l:A (2.3) BS05 ZN ? N/A P08046 9562555
    240 1a1m:A (2.3) BS01 peptide ? N/A P01889 8624812
    241 1a1n:A (2.0) BS01 peptide ? N/A P01889 8624811
    242 1a1o:A (2.3) BS01 peptide ? N/A P01889 8624812
    243 1a1r:A (2.5) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    244 1a1r:A (2.5) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    245 1a1r:B (2.5) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    246 1a1r:B (2.5) BS02 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    247 1a1r:B (2.5) BS03 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P27958 8861917
    248 1a1t:A (-1.00) BS01 rna ? GO:0003676 ... Q75677 9430589
    249 1a1t:A (-1.00) BS02 ZN ? GO:0003676 ... Q75677 9430589
    250 1a1t:A (-1.00) BS03 ZN ? GO:0003676 ... Q75677 9430589
    251 1a1v:A (2.2) BS01 rna 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0004386 ... P27958 9493270
    252 1a25:A (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    253 1a25:A (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    254 1a25:A (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    255 1a25:B (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    256 1a25:B (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    257 1a25:B (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    258 1a25:B (2.7) BS04 PSE 2.7.11.13 N/A P68403 9817842
    259 1a26:A (2.25) BS01 CNA 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 9571033
    260 1a27:A (1.9) BS01 EST 1.1.1.51
    1.1.1.62
    GO:0004303 ... P14061 N/A
    261 1a27:A (1.9) BS02 NAP 1.1.1.51
    1.1.1.62
    GO:0004303 ... P14061 N/A
    262 1a28:A (1.8) BS01 STR ? N/A P06401 9620806 MOAD: Ki=5.1nM
    PDBbind: -logKd/Ki=8.29, Ki=5.1nM
    BindingDB: Ki=3.5nM, EC50=2.9nM, IC50=>10000nM
    263 1a28:B (1.8) BS01 STR ? N/A P06401 9620806 MOAD: Ki=5.1nM
    BindingDB: Ki=3.5nM, EC50=2.9nM, IC50=>10000nM
    264 1a29:A (2.74) BS01 CA ? GO:0000922 ... P62157 9799490
    265 1a29:A (2.74) BS02 CA ? GO:0000922 ... P62157 9799490
    266 1a29:A (2.74) BS03 CA ? GO:0000922 ... P62157 9799490
    267 1a29:A (2.74) BS04 CA ? GO:0000922 ... P62157 9799490
    268 1a29:A (2.74) BS05 TFP ? GO:0000922 ... P62157 9799490 BindingDB: Kd=5000nM
    269 1a29:A (2.74) BS06 TFP ? GO:0000922 ... P62157 9799490 BindingDB: Kd=5000nM
    270 1a2b:A (2.4) BS01 MG 3.6.5.2 GO:0000902 ... P61586 9545299
    271 1a2b:A (2.4) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 9545299
    272 1a2c:H (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    273 1a2c:H (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 N/A
    274 1a2f:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    275 1a2g:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    276 1a2i:A (-1.00) BS01 HEC ? GO:0009055 ... P00131 9710542
    277 1a2i:A (-1.00) BS02 HEC ? GO:0009055 ... P00131 9710542
    278 1a2i:A (-1.00) BS03 HEC ? GO:0009055 ... P00131 9710542
    279 1a2i:A (-1.00) BS04 HEC ? GO:0009055 ... P00131 9710542
    280 1a2n:A (2.8) BS01 TET 2.5.1.7 GO:0003824 ... P0A749 9485407
    281 1a2p:C (1.5) BS01 ZN 3.1.27.- GO:0003723 ... P00648 10089345
    282 1a2q:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    283 1a2q:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    284 1a2s:A (-1.00) BS01 HEC ? GO:0005506 ... Q09099 9538000
    285 1a2t:A (1.96) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    286 1a2t:A (1.96) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    287 1a2u:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    288 1a2u:A (2.0) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    289 1a2v:A (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    290 1a2v:B (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    291 1a2v:C (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    292 1a2v:D (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    293 1a2v:E (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    294 1a2v:F (2.4) BS01 CU 1.4.3.21 GO:0005507 ... P12807 15299901
    295 1a2x:A (2.3) BS01 CA ? GO:0005509 ... P02586 9560191
    296 1a2x:A (2.3) BS02 CA ? GO:0005509 ... P02586 9560191
    297 1a30:A (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 9485357
    298 1a30:B (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 9485357
    299 1a31:A (2.1) BS01 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    300 1a31:A (2.1) BS02 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    301 1a34:A (1.81) BS01 rna ? GO:0005198 ... P17574 9514737
    302 1a34:A (1.81) BS02 rna ? GO:0005198 ... P17574 9514737
    303 1a34:A (1.81) BS03 SO4 ? GO:0005198 ... P17574 9514737
    304 1a34:A (1.81) BS04 U ? GO:0005198 ... P17574 9514737
    305 1a35:A (2.5) BS01 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    306 1a35:A (2.5) BS02 dna 5.6.2.1 GO:0003677 ... P11387 9488644
    307 1a36:A (2.8) BS01 dna 5.6.2.1 GO:0003677 ... P11387 9488652
    308 1a36:A (2.8) BS02 dna 5.6.2.1 GO:0003677 ... P11387 9488652
    309 1a37:A (3.6) BS01 peptide ? GO:0005737 ... P63103 9632691
    310 1a37:B (3.6) BS01 peptide ? GO:0005737 ... P63103 9632691
    311 1a38:A (3.35) BS01 peptide ? GO:0005737 ... P63103 9632691
    312 1a38:B (3.35) BS01 peptide ? GO:0005737 ... P63103 9632691
    313 1a3b:H (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    314 1a3b:H (1.8) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    315 1a3b:H (1.8) BS03 T29 3.4.21.5 GO:0004252 ... P00734 9772168
    316 1a3e:H (1.85) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    317 1a3e:H (1.85) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9772168
    318 1a3e:H (1.85) BS03 T16 3.4.21.5 GO:0004252 ... P00734 9772168
    319 1a3g:A (2.5) BS01 PLP 2.6.1.42 GO:0003824 ... P0AB80 9163511
    320 1a3g:B (2.5) BS01 PLP 2.6.1.42 GO:0003824 ... P0AB80 9163511
    321 1a3g:C (2.5) BS01 PLP 2.6.1.42 GO:0003824 ... P0AB80 9163511
    322 1a3k:A (2.1) BS01 GAL ? GO:0030246 ... P17931 9582341
    323 1a3l:H (1.95) BS01 CFC ? N/A P01869 9506943
    324 1a3l:L (1.95) BS01 CFC ? GO:0005576 ... P01837 9506943
    325 1a3n:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    326 1a3n:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    327 1a3n:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    328 1a3n:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    329 1a3o:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    330 1a3o:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    331 1a3o:C (1.8) BS01 HEM ? GO:0004601 ... P69905 10930827
    332 1a3o:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930827
    333 1a3q:A (2.1) BS01 dna ? GO:0003677 ... Q00653 9384586
    334 1a3q:A (2.1) BS02 dna ? GO:0003677 ... Q00653 9384586
    335 1a3q:B (2.1) BS01 dna ? GO:0003677 ... Q00653 9384586
    336 1a3q:B (2.1) BS02 dna ? GO:0003677 ... Q00653 9384586
    337 1a3r:H (2.1) BS01 peptide ? N/A Q505N9 8194515
    338 1a3r:L (2.1) BS01 peptide ? GO:0046872 ... Q52L64 8194515
    339 1a3t:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    340 1a3t:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    341 1a3u:A (2.05) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    342 1a3u:A (2.05) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    343 1a3v:A (2.2) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    344 1a3v:A (2.2) BS02 THP 3.1.31.1 GO:0003676 ... P00644 9260275
    345 1a3w:A (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    346 1a3w:A (3.0) BS02 FBP 2.7.1.40 GO:0000287 ... P00549 9519410
    347 1a3w:A (3.0) BS03 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    348 1a3w:B (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    349 1a3w:B (3.0) BS02 FBP 2.7.1.40 GO:0000287 ... P00549 9519410
    350 1a3w:B (3.0) BS03 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    351 1a3x:A (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    352 1a3x:A (3.0) BS02 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    353 1a3x:B (3.0) BS01 PGA 2.7.1.40 GO:0000287 ... P00549 9519410
    354 1a3x:B (3.0) BS02 MN 2.7.1.40 GO:0000287 ... P00549 9519410
    355 1a3z:A (1.9) BS01 CU1 ? GO:0005507 ... P0C918 N/A
    356 1a40:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 9865949
    357 1a42:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9541386
    358 1a42:A (2.25) BS02 BZU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9541386 PDBbind: -logKd/Ki=9.89, Kd=0.13nM
    359 1a44:A (1.84) BS01 ACT ? GO:0004867 ... P13696 9782057
    360 1a46:H (2.12) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10212123
    361 1a46:H (2.12) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10212123
    362 1a46:H (2.12) BS03 00K 3.4.21.5 GO:0004252 ... P00734 10212123 PDBbind: -logKd/Ki=5.70, Ki=2000nM
    363 1a47:A (2.56) BS01 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    364 1a47:A (2.56) BS02 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    365 1a47:A (2.56) BS03 G6D 2.4.1.19 GO:0003824 ... P26827 9488711
    366 1a47:A (2.56) BS04 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    367 1a47:A (2.56) BS05 ADH 2.4.1.19 GO:0003824 ... P26827 9488711
    368 1a47:A (2.56) BS06 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    369 1a47:A (2.56) BS07 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    370 1a49:A (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    371 1a49:A (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    372 1a49:A (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    373 1a49:B (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    374 1a49:B (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    375 1a49:C (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    376 1a49:C (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    377 1a49:C (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    378 1a49:D (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    379 1a49:D (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    380 1a49:D (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    381 1a49:E (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    382 1a49:E (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    383 1a49:E (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    384 1a49:F (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    385 1a49:F (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    386 1a49:F (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    387 1a49:G (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    388 1a49:G (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    389 1a49:G (2.1) BS03 ATP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    390 1a49:H (2.1) BS01 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    391 1a49:H (2.1) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9572839
    392 1a4a:A (1.89) BS01 CU ? GO:0005507 ... P00280 9520385
    393 1a4a:B (1.89) BS01 CU ? GO:0005507 ... P00280 9520385
    394 1a4b:A (1.91) BS01 CU ? GO:0005507 ... P00280 9520385
    395 1a4b:B (1.91) BS01 CU ? GO:0005507 ... P00280 9520385
    396 1a4c:A (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    397 1a4c:B (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    398 1a4c:C (2.45) BS01 CU ? GO:0005507 ... P00280 9520385
    399 1a4c:C (2.45) BS02 NO3 ? GO:0005507 ... P00280 9520385
    400 1a4c:D (2.45) BS01 CU ? GO:0005507 ... P00280 9520385

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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