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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38401 1opl:A (3.42) BS01 P16 2.7.10.2 GO:0004672 ... P00519 12654251 BindingDB: IC50=2.8nM
    38402 1opl:B (3.42) BS01 P16 2.7.10.2 GO:0004672 ... P00519 12654251 BindingDB: IC50=2.8nM
    38403 1opm:A (2.1) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 10504734
    38404 1opm:A (2.1) BS02 AZI 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 10504734
    38405 1opm:A (2.1) BS03 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 10504734
    38406 1opm:A (2.1) BS04 IYG 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 10504734
    38407 1opm:A (2.1) BS05 IYG 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 10504734
    38408 1opo:B (3.2) BS01 CA ? GO:0003723 ... P04383 8307192
    38409 1opo:C (3.2) BS01 CA ? GO:0003723 ... P04383 8307192
    38410 1opr:A (2.3) BS01 ORO 2.4.2.10 GO:0000287 ... P08870 7545004
    38411 1opr:A (2.3) BS02 PRP 2.4.2.10 GO:0000287 ... P08870 7545004
    38412 1oq4:A (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38413 1oq4:A (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38414 1oq4:A (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    38415 1oq4:B (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38416 1oq4:B (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38417 1oq4:B (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    38418 1oq4:C (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38419 1oq4:C (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38420 1oq4:C (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    38421 1oq4:D (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38422 1oq4:D (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38423 1oq4:D (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    38424 1oq4:E (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38425 1oq4:E (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38426 1oq4:E (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    38427 1oq4:F (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38428 1oq4:F (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38429 1oq4:F (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    38430 1oq5:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 14736236
    38431 1oq5:A (1.5) BS02 CEL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 14736236 MOAD: ic50=21nM
    PDBbind: -logKd/Ki=7.68, IC50=21nM
    BindingDB: Ki=21nM, IC50=21nM
    38432 1oq6:A (-1.00) BS01 CU 7.2.2.8 GO:0046872 ... O32220 12888353
    38433 1oq9:A (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38434 1oq9:A (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    38435 1oq9:A (2.4) BS03 ACT 1.14.19.2 GO:0005515 ... P22337 12704186
    38436 1oqb:A (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    38437 1oqb:B (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    38438 1oqb:C (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    38439 1oqb:D (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    38440 1oqb:E (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    38441 1oqb:F (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    38442 1oqc:A (1.8) BS01 FAD 1.8.3.2 GO:0016971 ... Q63042 N/A
    38443 1oqc:B (1.8) BS01 FAD 1.8.3.2 GO:0016971 ... Q63042 N/A
    38444 1oqc:C (1.8) BS01 FAD 1.8.3.2 GO:0016971 ... Q63042 N/A
    38445 1oqc:D (1.8) BS01 FAD 1.8.3.2 GO:0016971 ... Q63042 N/A
    38446 1oqd:E (2.6) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    38447 1oqd:F (2.6) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    38448 1oqe:E (2.5) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    38449 1oqe:F (2.5) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    38450 1oqg:A (1.9) BS01 CO3 ? GO:0005576 ... P02787 12795604
    38451 1oqg:A (1.9) BS02 FE ? GO:0005576 ... P02787 12795604
    38452 1oqh:A (2.4) BS01 CO3 ? GO:0005576 ... P02787 12795604
    38453 1oqh:A (2.4) BS02 FE ? GO:0005576 ... P02787 12795604
    38454 1oqj:A (1.55) BS01 ZN ? GO:0003677 ... Q9Y692 12702733
    38455 1oqj:B (1.55) BS01 ZN ? GO:0003677 ... Q9Y692 12702733
    38456 1oql:B (3.0) BS01 GAL 3.2.2.22 N/A P81446 12823544
    38457 1oql:B (3.0) BS02 GAL 3.2.2.22 N/A P81446 12823544
    38458 1oqm:A (2.1) BS01 CA ? GO:0004461 ... P29752 11916963
    38459 1oqm:B (2.1) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 11916963
    38460 1oqm:B (2.1) BS02 UD2 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 11916963
    38461 1oqm:C (2.1) BS01 CA ? GO:0004461 ... P29752 11916963
    38462 1oqm:D (2.1) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 11916963
    38463 1oqm:D (2.1) BS02 UD2 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P08037 11916963
    38464 1oqn:A (2.3) BS01 peptide ? N/A P97318 12826668
    38465 1oqn:A (2.3) BS02 I3P ? N/A P97318 12826668
    38466 1oqn:B (2.3) BS01 peptide ? N/A P97318 12826668
    38467 1oqn:B (2.3) BS02 I3P ? N/A P97318 12826668
    38468 1oqo:A (2.3) BS01 BMA ? N/A P01857 N/A
    38469 1oqp:A (-1.00) BS01 peptide ? GO:0005509 ... P05434 12842464
    38470 1oqq:A (1.47) BS01 FES ? GO:0005515 ... P00259 14529624
    38471 1oqq:B (1.47) BS01 FES ? GO:0005515 ... P00259 14529624
    38472 1oqr:A (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    38473 1oqr:B (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    38474 1oqr:C (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    38475 1oqu:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38476 1oqu:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38477 1oqu:A (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38478 1oqu:A (2.0) BS04 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    38479 1oqu:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38480 1oqu:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38481 1oqu:C (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38482 1oqu:C (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38483 1oqu:C (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38484 1oqu:C (2.0) BS04 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38485 1oqu:C (2.0) BS05 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38486 1oqu:C (2.0) BS06 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    38487 1oqu:D (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38488 1oqu:D (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38489 1oqu:D (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    38490 1oqu:D (2.0) BS04 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    38491 1oqx:B (2.6) BS01 BMA ? N/A P01857 N/A
    38492 1or4:A (2.15) BS01 HEM ? GO:0019825 ... O07621 12962628
    38493 1or4:B (2.15) BS01 HEM ? GO:0019825 ... O07621 12962628
    38494 1or6:A (2.71) BS01 HEM ? GO:0019825 ... O07621 12962628
    38495 1or6:B (2.71) BS01 HEM ? GO:0019825 ... O07621 12962628
    38496 1or8:A (2.35) BS01 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38497 1or8:A (2.35) BS02 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38498 1or8:A (2.35) BS03 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38499 1or8:A (2.35) BS04 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38500 1or8:A (2.35) BS05 SAH 2.1.1.319 GO:0001701 ... Q63009 12737817
    38501 1orb:A (2.0) BS01 ACT 2.8.1.1 GO:0003723 ... P00586 8702871
    38502 1ord:A (3.0) BS01 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38503 1ord:A (3.0) BS02 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38504 1ord:B (3.0) BS01 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38505 1ord:B (3.0) BS02 PLP 4.1.1.17 GO:0003824 ... P43099 7563080
    38506 1ore:A (2.1) BS01 AMP 2.4.2.7 GO:0002055 ... P07741 15196008
    38507 1orf:A (2.4) BS01 0G6 3.4.21.78 GO:0001772 ... P12544 12819769
    38508 1orh:A (2.64) BS01 peptide 2.1.1.319 GO:0001701 ... Q63009 12737817
    38509 1orh:A (2.64) BS02 SAH 2.1.1.319 GO:0001701 ... Q63009 12737817
    38510 1ori:A (2.5) BS01 SAH 2.1.1.319 GO:0001701 ... Q63009 12737817
    38511 1ork:A (2.4) BS01 ATC ? GO:0000976 ... P0ACT4 9878420 MOAD: Kd=1.56nM
    PDBbind: -logKd/Ki=8.81, Kd=1.56nM
    38512 1orn:A (1.7) BS01 dna N/A GO:0003677 ... N/A 12840008
    38513 1orn:A (1.7) BS02 dna N/A GO:0003677 ... N/A 12840008
    38514 1orn:A (1.7) BS03 SF4 N/A GO:0003677 ... N/A 12840008
    38515 1oro:A (2.4) BS01 SO4 2.4.2.10 GO:0000287 ... P0A7E3 8620002
    38516 1orp:A (2.2) BS01 dna N/A GO:0003677 ... N/A 12840008
    38517 1orp:A (2.2) BS02 dna N/A GO:0003677 ... N/A 12840008
    38518 1orp:A (2.2) BS03 SF4 N/A GO:0003677 ... N/A 12840008
    38519 1orr:A (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38520 1orr:A (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38521 1orr:B (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38522 1orr:B (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38523 1orr:C (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38524 1orr:C (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38525 1orr:D (1.5) BS01 NAD 5.1.3.10 GO:0008460 ... P14169 12642575
    38526 1orr:D (1.5) BS02 CDP 5.1.3.10 GO:0008460 ... P14169 12642575
    38527 1orw:A (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    38528 1orw:A (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    38529 1orw:B (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074
    38530 1orw:B (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074
    38531 1orw:C (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074
    38532 1orw:C (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074
    38533 1orw:D (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074
    38534 1orw:D (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074
    38535 1os0:A (2.1) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 12832763
    38536 1os0:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38537 1os0:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38538 1os0:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38539 1os0:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    38540 1os0:A (2.1) BS06 0PQ 3.4.24.27 GO:0004222 ... P00800 12832763 MOAD: Ki=0.93uM
    PDBbind: -logKd/Ki=6.03, Ki=0.93uM
    38541 1os1:A (1.8) BS01 CA 4.1.1.49 GO:0000287 ... P22259 12837799
    38542 1os1:A (1.8) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 12837799
    38543 1os1:A (1.8) BS03 PYR 4.1.1.49 GO:0000287 ... P22259 12837799
    38544 1os2:A (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38545 1os2:A (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38546 1os2:A (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38547 1os2:A (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38548 1os2:A (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38549 1os2:B (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38550 1os2:B (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38551 1os2:B (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38552 1os2:B (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38553 1os2:B (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38554 1os2:C (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38555 1os2:C (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38556 1os2:C (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38557 1os2:C (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38558 1os2:C (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38559 1os2:C (2.15) BS06 AZI 3.4.24.65 GO:0004222 ... P39900 12813751
    38560 1os2:D (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38561 1os2:D (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38562 1os2:D (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38563 1os2:D (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38564 1os2:D (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38565 1os2:E (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38566 1os2:E (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38567 1os2:E (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38568 1os2:E (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38569 1os2:E (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38570 1os2:F (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38571 1os2:F (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38572 1os2:F (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38573 1os2:F (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38574 1os2:F (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38575 1os5:A (2.2) BS01 NH1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 12805457 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    38576 1os6:A (1.45) BS01 HEC ? GO:0009055 ... Q8GGK7 14744127
    38577 1os6:A (1.45) BS02 HEC ? GO:0009055 ... Q8GGK7 14744127
    38578 1os6:A (1.45) BS03 HEC ? GO:0009055 ... Q8GGK7 14744127
    38579 1os6:A (1.45) BS04 DXC ? GO:0009055 ... Q8GGK7 14744127
    38580 1os7:A (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38581 1os7:A (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38582 1os7:B (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38583 1os7:B (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38584 1os7:C (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38585 1os7:C (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38586 1os7:D (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    38587 1os7:D (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    38588 1os8:A (1.55) BS01 CA 3.4.21.4 GO:0004252 ... P00775 12885239
    38589 1os9:A (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38590 1os9:A (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38591 1os9:A (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38592 1os9:A (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38593 1os9:A (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38594 1os9:B (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38595 1os9:B (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38596 1os9:B (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38597 1os9:B (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38598 1os9:B (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    38599 1os9:C (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    38600 1os9:C (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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