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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37601 1ofg:C (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37602 1ofg:D (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37603 1ofg:D (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37604 1ofg:E (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37605 1ofg:F (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    37606 1ofh:A (2.5) BS01 ADP ? GO:0005524 ... P43773 12823960
    37607 1ofh:B (2.5) BS01 ADP ? GO:0005524 ... P43773 12823960
    37608 1ofh:C (2.5) BS01 ADP ? GO:0005524 ... P43773 12823960
    37609 1ofh:G (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37610 1ofh:H (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37611 1ofh:I (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37612 1ofh:L (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37613 1ofh:M (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37614 1ofh:N (2.5) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37615 1ofi:A (3.2) BS01 ADP ? GO:0005524 ... P43773 12823960
    37616 1ofi:B (3.2) BS01 ADP ? GO:0005524 ... P43773 12823960
    37617 1ofi:C (3.2) BS01 ADP ? GO:0005524 ... P43773 12823960
    37618 1ofi:G (3.2) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12823960
    37619 1ofi:G (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37620 1ofi:H (3.2) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12823960
    37621 1ofi:H (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37622 1ofi:I (3.2) BS01 LVS 3.4.25.2 GO:0004298 ... P43772 12823960
    37623 1ofi:I (3.2) BS02 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37624 1ofi:L (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37625 1ofi:M (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37626 1ofi:N (3.2) BS01 MG 3.4.25.2 GO:0004298 ... P43772 12823960
    37627 1ofj:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9915818
    37628 1ofk:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9915818
    37629 1ofl:A (1.7) BS01 MAN 4.2.2.19 GO:0016829 ... Q46079 15155751
    37630 1ofl:A (1.7) BS02 GCU 4.2.2.19 GO:0016829 ... Q46079 15155751
    37631 1ofl:A (1.7) BS03 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37632 1ofl:A (1.7) BS04 GCD 4.2.2.19 GO:0016829 ... Q46079 15155751
    37633 1ofl:A (1.7) BS05 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37634 1ofl:A (1.7) BS06 GCD 4.2.2.19 GO:0016829 ... Q46079 15155751
    37635 1ofl:A (1.7) BS07 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37636 1ofl:A (1.7) BS08 NGK 4.2.2.19 GO:0016829 ... Q46079 15155751
    37637 1ofl:A (1.7) BS09 CA 4.2.2.19 GO:0016829 ... Q46079 15155751
    37638 1ofm:A (1.8) BS01 MAN 4.2.2.19 GO:0016829 ... Q46079 15155751
    37639 1ofm:A (1.8) BS02 ASG 4.2.2.19 GO:0016829 ... Q46079 15155751
    37640 1ofo:A (1.86) BS01 PGA 2.5.1.54 GO:0003849 ... P32449 15019786
    37641 1ofo:B (1.86) BS01 PGA 2.5.1.54 GO:0003849 ... P32449 15019786
    37642 1ofq:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37643 1ofq:B (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37644 1ofq:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37645 1ofq:D (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37646 1ofr:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37647 1ofr:B (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37648 1ofr:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37649 1ofr:C (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37650 1ofr:C (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37651 1ofr:D (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37652 1ofr:D (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37653 1ofr:D (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37654 1ofr:E (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37655 1ofr:F (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37656 1ofr:G (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37657 1ofr:G (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37658 1ofr:H (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    37659 1ofr:H (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37660 1ofr:H (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 15019786
    37661 1ofs:A (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37662 1ofs:A (1.8) BS02 MN ? GO:0030246 ... P02867 N/A
    37663 1ofs:A (1.8) BS03 CA ? GO:0030246 ... P02867 N/A
    37664 1ofs:B (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37665 1ofs:B (1.8) BS02 FRU ? GO:0030246 ... P02867 N/A
    37666 1ofs:C (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37667 1ofs:C (1.8) BS02 MN ? GO:0030246 ... P02867 N/A
    37668 1ofs:C (1.8) BS03 CA ? GO:0030246 ... P02867 N/A
    37669 1ofs:D (1.8) BS01 GLC ? GO:0030246 ... P02867 N/A
    37670 1ofs:D (1.8) BS02 FRU ? GO:0030246 ... P02867 N/A
    37671 1ofu:A (2.1) BS01 GDP ? GO:0003924 ... P47204 12808143
    37672 1ofu:B (2.1) BS01 GDP ? GO:0003924 ... P47204 12808143
    37673 1ofv:A (1.7) BS01 FMN ? GO:0009055 ... P10340 10610791
    37674 1ofw:A (1.5) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37675 1ofw:A (1.5) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37676 1ofw:A (1.5) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37677 1ofw:A (1.5) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37678 1ofw:A (1.5) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37679 1ofw:A (1.5) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37680 1ofw:A (1.5) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37681 1ofw:A (1.5) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37682 1ofw:A (1.5) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37683 1ofw:B (1.5) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37684 1ofw:B (1.5) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37685 1ofw:B (1.5) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37686 1ofw:B (1.5) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37687 1ofw:B (1.5) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37688 1ofw:B (1.5) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37689 1ofw:B (1.5) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37690 1ofw:B (1.5) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37691 1ofw:B (1.5) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37692 1ofw:B (1.5) BS10 HEC ? GO:0009055 ... Q9RN68 12750363
    37693 1ofy:A (2.0) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37694 1ofy:A (2.0) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37695 1ofy:A (2.0) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37696 1ofy:A (2.0) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37697 1ofy:A (2.0) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37698 1ofy:A (2.0) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37699 1ofy:A (2.0) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37700 1ofy:A (2.0) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37701 1ofy:A (2.0) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37702 1ofy:B (2.0) BS01 HEC ? GO:0009055 ... Q9RN68 12750363
    37703 1ofy:B (2.0) BS02 HEC ? GO:0009055 ... Q9RN68 12750363
    37704 1ofy:B (2.0) BS03 HEC ? GO:0009055 ... Q9RN68 12750363
    37705 1ofy:B (2.0) BS04 HEC ? GO:0009055 ... Q9RN68 12750363
    37706 1ofy:B (2.0) BS05 HEC ? GO:0009055 ... Q9RN68 12750363
    37707 1ofy:B (2.0) BS06 HEC ? GO:0009055 ... Q9RN68 12750363
    37708 1ofy:B (2.0) BS07 HEC ? GO:0009055 ... Q9RN68 12750363
    37709 1ofy:B (2.0) BS08 HEC ? GO:0009055 ... Q9RN68 12750363
    37710 1ofy:B (2.0) BS09 HEC ? GO:0009055 ... Q9RN68 12750363
    37711 1ofy:B (2.0) BS10 HEC ? GO:0009055 ... Q9RN68 12750363
    37712 1ofz:A (1.5) BS01 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37713 1ofz:A (1.5) BS02 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37714 1ofz:A (1.5) BS03 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37715 1ofz:A (1.5) BS04 FUC ? GO:0030246 ... P18891 12732625
    37716 1ofz:A (1.5) BS05 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37717 1ofz:A (1.5) BS06 FUC ? GO:0030246 ... P18891 12732625
    37718 1ofz:B (1.5) BS01 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37719 1ofz:B (1.5) BS02 FUC ? GO:0030246 ... P18891 12732625
    37720 1ofz:B (1.5) BS03 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37721 1ofz:B (1.5) BS04 FUC ? GO:0030246 ... P18891 12732625
    37722 1ofz:B (1.5) BS05 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37723 1ofz:B (1.5) BS06 FUL ? GO:0030246 ... P18891 12732625 MOAD: Kd=24.1uM
    37724 1og0:A (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37725 1og0:A (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37726 1og0:B (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37727 1og0:B (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37728 1og0:C (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37729 1og0:C (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37730 1og0:C (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37731 1og0:D (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37732 1og0:D (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37733 1og0:D (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37734 1og0:E (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37735 1og0:E (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37736 1og0:E (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37737 1og0:F (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37738 1og0:F (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37739 1og0:F (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37740 1og0:G (2.7) BS01 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37741 1og0:G (2.7) BS02 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37742 1og0:G (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37743 1og0:H (2.7) BS01 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37744 1og0:H (2.7) BS02 MN 2.5.1.54 GO:0003849 ... P32449 N/A
    37745 1og0:H (2.7) BS03 PHE 2.5.1.54 GO:0003849 ... P32449 N/A
    37746 1og1:A (2.0) BS01 TAD 2.4.2.31
    3.2.2.5
    GO:0106274 ... P20974 12939142
    37747 1og2:A (2.6) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 12861225
    37748 1og2:B (2.6) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 12861225
    37749 1og3:A (2.6) BS01 NAD 2.4.2.31
    3.2.2.5
    GO:0106274 ... P20974 12939142
    37750 1og4:A (2.6) BS01 NAI 2.4.2.31
    3.2.2.5
    GO:0106274 ... P20974 12939142
    37751 1og5:A (2.55) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 12861225
    37752 1og5:A (2.55) BS02 SWF 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 12861225
    37753 1og5:B (2.55) BS01 HEC 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 12861225
    37754 1og5:B (2.55) BS02 SWF 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 12861225
    37755 1og6:A (2.8) BS01 NAP 1.-.-.- GO:0005829 ... P76187 N/A
    37756 1og6:B (2.8) BS01 NAP 1.-.-.- GO:0005829 ... P76187 N/A
    37757 1og6:C (2.8) BS01 NAP 1.-.-.- GO:0005829 ... P76187 N/A
    37758 1oga:A (1.4) BS01 peptide ? N/A P04439 12796775
    37759 1oga:D (1.4) BS01 peptide ? N/A P01848 12796775
    37760 1oga:E (1.4) BS01 peptide ? N/A P01850 12796775
    37761 1ogd:A (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37762 1ogd:B (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37763 1ogd:C (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37764 1ogd:D (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37765 1ogd:E (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    37766 1oge:A (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37767 1oge:B (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37768 1oge:C (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37769 1oge:D (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37770 1oge:E (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    37771 1ogg:A (1.97) BS01 AMI 3.2.1.14 GO:0004553 ... P11797 14726210 PDBbind: -logKd/Ki=5.19, Ki=6.4uM
    37772 1ogg:B (1.97) BS01 AMI 3.2.1.14 GO:0004553 ... P11797 14726210
    37773 1ogi:A (1.64) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 14500716
    37774 1ogj:A (1.64) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 14500716
    37775 1ogo:X (1.65) BS01 BGC 3.2.1.11 GO:0004553 ... P48845 12962629
    37776 1ogo:X (1.65) BS02 GLC 3.2.1.11 GO:0004553 ... P48845 12962629
    37777 1ogp:A (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37778 1ogp:B (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37779 1ogp:C (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37780 1ogp:D (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37781 1ogp:E (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37782 1ogp:F (2.6) BS01 MTQ 1.8.3.1 GO:0005739 ... Q9S850 14527393
    37783 1ogt:A (1.47) BS01 peptide ? N/A P01889 14734527
    37784 1ogu:A (2.6) BS01 ST8 2.7.11.22 GO:0000082 ... P24941 12941338 PDBbind: -logKd/Ki=7.47, IC50=0.034uM
    BindingDB: Ki=2400nM, IC50=34nM
    37785 1ogu:C (2.6) BS01 ST8 2.7.11.22 GO:0000082 ... P24941 12941338 BindingDB: Ki=2400nM, IC50=34nM
    37786 1ogv:H (2.35) BS01 CDL ? GO:0015979 ... P0C0Y7 12899837
    37787 1ogv:L (2.35) BS01 BCL ? GO:0009772 ... P0C0Y8 12899837
    37788 1ogv:L (2.35) BS02 BCL ? GO:0009772 ... P0C0Y8 12899837
    37789 1ogv:L (2.35) BS03 BPH ? GO:0009772 ... P0C0Y8 12899837
    37790 1ogv:L (2.35) BS04 BCL ? GO:0009772 ... P0C0Y8 12899837
    37791 1ogv:L (2.35) BS05 BPH ? GO:0009772 ... P0C0Y8 12899837
    37792 1ogv:L (2.35) BS06 U10 ? GO:0009772 ... P0C0Y8 12899837
    37793 1ogv:L (2.35) BS07 FE2 ? GO:0009772 ... P0C0Y8 12899837
    37794 1ogv:M (2.35) BS01 BCL ? GO:0009772 ... P0C0Y9 12899837
    37795 1ogv:M (2.35) BS02 BPH ? GO:0009772 ... P0C0Y9 12899837
    37796 1ogv:M (2.35) BS03 BCL ? GO:0009772 ... P0C0Y9 12899837
    37797 1ogv:M (2.35) BS04 BCL ? GO:0009772 ... P0C0Y9 12899837
    37798 1ogv:M (2.35) BS05 BPH ? GO:0009772 ... P0C0Y9 12899837
    37799 1ogv:M (2.35) BS06 U10 ? GO:0009772 ... P0C0Y9 12899837
    37800 1ogv:M (2.35) BS07 CDL ? GO:0009772 ... P0C0Y9 12899837

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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