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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33001 1mxi:A (1.7) BS01 SAH 2.1.1.207 GO:0001510 ... P44868 12596263
    33002 1mxl:C (-1.00) BS01 peptide ? GO:0005509 ... P63316 10387074
    33003 1mxl:C (-1.00) BS02 CA ? GO:0005509 ... P63316 10387074
    33004 1mxo:A (1.83) BS01 SM2 3.5.2.6 GO:0008800 ... P00811 12526668 PDBbind: -logKd/Ki=9.00, Ki=1nM
    33005 1mxo:B (1.83) BS01 SM2 3.5.2.6 GO:0008800 ... P00811 12526668
    33006 1mxr:A (1.42) BS01 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    33007 1mxr:A (1.42) BS02 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    33008 1mxr:B (1.42) BS01 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    33009 1mxr:B (1.42) BS02 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    33010 1mxs:A (2.2) BS01 SO4 4.1.2.14 GO:0008675 ... P00885 12876349
    33011 1mxt:A (0.95) BS01 FAE 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 12595270
    33012 1mxt:A (0.95) BS02 OXY 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 12595270
    33013 1mxu:A (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    33014 1mxu:A (1.8) BS02 BWD ? GO:0015276 ... P19491 12731861 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: Ki=61nM
    33015 1mxu:B (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    33016 1mxu:B (1.8) BS02 ZN ? GO:0015276 ... P19491 12731861
    33017 1mxu:B (1.8) BS03 BWD ? GO:0015276 ... P19491 12731861 MOAD: ic50=4uM
    BindingDB: Ki=61nM
    33018 1mxu:C (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    33019 1mxu:C (1.8) BS02 BWD ? GO:0015276 ... P19491 12731861 MOAD: ic50=4uM
    BindingDB: Ki=61nM
    33020 1mxv:A (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    33021 1mxv:B (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    33022 1mxv:B (1.95) BS02 ZN ? GO:0015276 ... P19491 12731861
    33023 1mxv:C (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    33024 1mxw:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33025 1mxw:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33026 1mxw:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    33027 1mxw:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33028 1mxx:A (2.0) BS01 ZN ? GO:0015276 ... P19491 12731861
    33029 1mxx:B (2.0) BS01 ZN ? GO:0015276 ... P19491 12731861
    33030 1mxx:B (2.0) BS02 ZN ? GO:0015276 ... P19491 12731861
    33031 1mxy:A (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    33032 1mxy:B (1.95) BS01 ZN ? GO:0015276 ... P19491 12731861
    33033 1mxy:B (1.95) BS02 ZN ? GO:0015276 ... P19491 12731861
    33034 1mxz:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33035 1mxz:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33036 1mxz:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    33037 1mxz:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33038 1my0:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33039 1my0:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33040 1my0:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    33041 1my0:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33042 1my1:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33043 1my1:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33044 1my1:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    33045 1my1:C (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33046 1my2:A (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    33047 1my2:A (1.8) BS02 AMQ ? GO:0015276 ... P19491 12731861 BindingDB: Ki=17nM
    33048 1my2:B (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    33049 1my2:B (1.8) BS02 ZN ? GO:0015276 ... P19491 12731861
    33050 1my2:B (1.8) BS03 AMQ ? GO:0015276 ... P19491 12731861 BindingDB: Ki=17nM
    33051 1my2:C (1.8) BS01 ZN ? GO:0015276 ... P19491 12731861
    33052 1my2:C (1.8) BS02 AMQ ? GO:0015276 ... P19491 12731861 BindingDB: Ki=17nM
    33053 1my3:A (1.75) BS01 ZN ? GO:0015276 ... P19491 12731861
    33054 1my3:A (1.75) BS02 BWD ? GO:0015276 ... P19491 12731861 PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: Ki=61nM
    33055 1my3:B (1.75) BS01 ZN ? GO:0015276 ... P19491 12731861
    33056 1my3:B (1.75) BS02 ZN ? GO:0015276 ... P19491 12731861
    33057 1my3:B (1.75) BS03 BWD ? GO:0015276 ... P19491 12731861 BindingDB: Ki=61nM
    33058 1my3:C (1.75) BS01 BWD ? GO:0015276 ... P19491 12731861 BindingDB: Ki=61nM
    33059 1my4:A (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33060 1my4:A (1.9) BS02 IWD ? GO:0015276 ... P19491 12731861 PDBbind: -logKd/Ki=6.98, Ki=105nM
    BindingDB: Ki=105nM
    33061 1my4:B (1.9) BS01 ZN ? GO:0015276 ... P19491 12731861
    33062 1my4:B (1.9) BS02 ZN ? GO:0015276 ... P19491 12731861
    33063 1my4:B (1.9) BS03 IWD ? GO:0015276 ... P19491 12731861 BindingDB: Ki=105nM
    33064 1my4:C (1.9) BS01 IWD ? GO:0015276 ... P19491 12731861 BindingDB: Ki=105nM
    33065 1my6:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... Q8DIR2 12827458
    33066 1my6:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... Q8DIR2 12827458
    33067 1my8:A (1.72) BS01 SM3 3.5.2.6 GO:0008800 ... P00811 12526668 MOAD: Ki=0.035uM
    PDBbind: -logKd/Ki=7.46, Ki=35nM
    33068 1my8:B (1.72) BS01 SM3 3.5.2.6 GO:0008800 ... P00811 12526668 MOAD: Ki=0.035uM
    33069 1myf:A (-1.00) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 7966330
    33070 1myg:A (1.75) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33071 1myg:A (1.75) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33072 1myg:B (1.75) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33073 1myg:B (1.75) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33074 1myh:A (1.9) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33075 1myh:A (1.9) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33076 1myh:B (1.9) BS01 SO4 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33077 1myh:B (1.9) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33078 1myi:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33079 1myi:B (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1390659
    33080 1myj:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1905570
    33081 1myj:B (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02189 1905570
    33082 1mym:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8312263
    33083 1myp:A (3.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 1320128
    33084 1myp:B (3.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 1320128
    33085 1myp:C (3.0) BS01 CA 1.11.2.2 GO:0004601 ... P05164 1320128
    33086 1myp:C (3.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 1320128
    33087 1myp:D (3.0) BS01 CA 1.11.2.2 GO:0004601 ... P05164 1320128
    33088 1myp:D (3.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 1320128
    33089 1myr:A (1.64) BS01 ZN 3.2.1.147 GO:0004553 ... P29736 9195886
    33090 1myt:A (1.74) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02205 15299440
    33091 1myz:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 12847289
    33092 1mz0:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 12847289
    33093 1mz4:A (1.8) BS01 BCT ? GO:0005506 ... P0A386 12881497
    33094 1mz4:A (1.8) BS02 HEC ? GO:0005506 ... P0A386 12881497
    33095 1mz6:A (2.9) BS01 DAN 3.2.1.18 GO:0004308 ... O44049 10619840
    33096 1mz8:B (2.0) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 12441392
    33097 1mz8:B (2.0) BS02 PO4 3.1.-.- GO:0004519 ... Q47112 12441392
    33098 1mz8:D (2.0) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 12441392
    33099 1mz9:A (1.7) BS01 VDY ? N/A Q9R0G6 12426368
    33100 1mz9:A (1.7) BS02 VDY ? N/A Q9R0G6 12426368
    33101 1mz9:B (1.7) BS01 VDY ? N/A Q9R0G6 12426368
    33102 1mz9:B (1.7) BS02 VDY ? N/A Q9R0G6 12426368
    33103 1mz9:C (1.7) BS01 VDY ? N/A Q9R0G6 12426368
    33104 1mz9:D (1.7) BS01 VDY ? N/A Q9R0G6 12426368
    33105 1mz9:D (1.7) BS02 VDY ? N/A Q9R0G6 12426368
    33106 1mz9:E (1.7) BS01 VDY ? N/A Q9R0G6 12426368
    33107 1mz9:E (1.7) BS02 VDY ? N/A Q9R0G6 12426368
    33108 1mzb:A (1.8) BS01 ZN ? GO:0000976 ... Q03456 12581348
    33109 1mzb:A (1.8) BS02 ZN ? GO:0000976 ... Q03456 12581348
    33110 1mzb:A (1.8) BS03 ZN ? GO:0000976 ... Q03456 12581348
    33111 1mzc:A (2.0) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12825937
    33112 1mzc:A (2.0) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 12825937 BindingDB: Kd=2.0nM
    33113 1mzc:B (2.0) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 12825937
    33114 1mzc:B (2.0) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12825937
    33115 1mzc:B (2.0) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 12825937
    33116 1mzc:B (2.0) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 12825937
    33117 1mzc:B (2.0) BS05 BNE 2.5.1.58 GO:0003824 ... P49356 12825937 MOAD: ic50=0.06nM
    PDBbind: -logKd/Ki=10.22, IC50=0.06nM
    BindingDB: IC50=0.06nM
    33118 1mze:A (2.2) BS01 FE2 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 12432100
    33119 1mzf:A (2.4) BS01 FE2 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 12432100
    33120 1mzf:A (2.4) BS02 AKG 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 12432100
    33121 1mzj:A (2.1) BS01 COA 2.3.1.180
    2.3.1.300
    GO:0004315 ... Q9F6D4 12429097
    33122 1mzj:B (2.1) BS01 COA 2.3.1.180
    2.3.1.300
    GO:0004315 ... Q9F6D4 12429097
    33123 1mzn:A (1.9) BS01 peptide ? GO:0003677 ... P19793 11981034
    33124 1mzn:A (1.9) BS02 BM6 ? GO:0003677 ... P19793 11981034
    33125 1mzn:C (1.9) BS01 peptide ? GO:0003677 ... P19793 11981034
    33126 1mzn:C (1.9) BS02 BM6 ? GO:0003677 ... P19793 11981034
    33127 1mzn:E (1.9) BS01 peptide ? GO:0003677 ... P19793 11981034
    33128 1mzn:E (1.9) BS02 BM6 ? GO:0003677 ... P19793 11981034
    33129 1mzn:G (1.9) BS01 peptide ? GO:0003677 ... P19793 11981034
    33130 1mzn:G (1.9) BS02 BM6 ? GO:0003677 ... P19793 11981034
    33131 1mzo:A (2.7) BS01 PYR 2.3.1.54 GO:0003824 ... P09373 12454503
    33132 1mzo:B (2.7) BS01 PYR 2.3.1.54 GO:0003824 ... P09373 12454503
    33133 1mzp:A (2.65) BS01 rna ? GO:0000049 ... P35024 12514741
    33134 1mzs:A (2.1) BS01 669 2.3.1.180 GO:0004315 ... P0A6R0 12502353 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7.0uM
    33135 1mzv:A (2.2) BS01 AMP 2.4.2.7 GO:0000166 ... O77103 14726202
    33136 1mzy:A (1.46) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33137 1mzy:A (1.46) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33138 1mzy:A (1.46) BS03 MG 1.7.2.1 GO:0005507 ... Q53239 N/A
    33139 1mzz:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33140 1mzz:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33141 1mzz:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33142 1mzz:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33143 1mzz:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33144 1mzz:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    33145 1n03:A (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33146 1n03:B (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33147 1n03:C (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33148 1n03:D (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33149 1n03:E (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33150 1n03:F (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33151 1n03:G (20.0) BS01 ADP ? GO:0000725 ... P0A7G6 12575938
    33152 1n04:A (2.8) BS01 FUL ? GO:0005506 ... P02789 14501117
    33153 1n04:A (2.8) BS02 FE ? GO:0005506 ... P02789 14501117
    33154 1n04:A (2.8) BS03 FE ? GO:0005506 ... P02789 14501117
    33155 1n04:A (2.8) BS04 CO3 ? GO:0005506 ... P02789 14501117
    33156 1n04:A (2.8) BS05 CO3 ? GO:0005506 ... P02789 14501117
    33157 1n06:A (2.0) BS01 ADP 2.7.1.26 GO:0005524 ... O74866 12595258
    33158 1n06:B (2.0) BS01 ADP 2.7.1.26 GO:0005524 ... O74866 12595258
    33159 1n07:A (2.45) BS01 ADP 2.7.1.26 GO:0005524 ... O74866 12595258
    33160 1n07:A (2.45) BS02 FMN 2.7.1.26 GO:0005524 ... O74866 12595258
    33161 1n07:B (2.45) BS01 ADP 2.7.1.26 GO:0005524 ... O74866 12595258
    33162 1n07:B (2.45) BS02 FMN 2.7.1.26 GO:0005524 ... O74866 12595258
    33163 1n08:A (1.6) BS01 ADP 2.7.1.26 GO:0005524 ... O74866 12595258
    33164 1n08:B (1.6) BS01 ADP 2.7.1.26 GO:0005524 ... O74866 12595258
    33165 1n0h:A (2.8) BS01 MG 2.2.1.6 GO:0000287 ... P07342 14557277
    33166 1n0h:A (2.8) BS02 CIE 2.2.1.6 GO:0000287 ... P07342 14557277 BindingDB: Ki=3.3nM
    33167 1n0h:A (2.8) BS03 AYD 2.2.1.6 GO:0000287 ... P07342 14557277
    33168 1n0h:A (2.8) BS04 FAD 2.2.1.6 GO:0000287 ... P07342 14557277
    33169 1n0h:A (2.8) BS05 CIE 2.2.1.6 GO:0000287 ... P07342 14557277 BindingDB: Ki=3.3nM
    33170 1n0h:A (2.8) BS06 TPP 2.2.1.6 GO:0000287 ... P07342 14557277
    33171 1n0h:B (2.8) BS01 CIE 2.2.1.6 GO:0000287 ... P07342 14557277 BindingDB: Ki=3.3nM
    33172 1n0h:B (2.8) BS02 AYD 2.2.1.6 GO:0000287 ... P07342 14557277
    33173 1n0h:B (2.8) BS03 MG 2.2.1.6 GO:0000287 ... P07342 14557277
    33174 1n0h:B (2.8) BS04 CIE 2.2.1.6 GO:0000287 ... P07342 14557277 BindingDB: Ki=3.3nM
    33175 1n0h:B (2.8) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 14557277
    33176 1n0h:B (2.8) BS06 FAD 2.2.1.6 GO:0000287 ... P07342 14557277
    33177 1n0j:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 1394426
    33178 1n0j:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 1394426
    33179 1n0n:A (1.82) BS01 MN 1.15.1.1 GO:0004784 ... P04179 N/A
    33180 1n0n:B (1.82) BS01 MN 1.15.1.1 GO:0004784 ... P04179 N/A
    33181 1n0q:B (1.26) BS01 TFA N/A N/A N/A 12461176
    33182 1n0s:A (2.0) BS01 FLU ? GO:0000302 ... P09464 12945055 MOAD: Kd=35.2nM
    PDBbind: -logKd/Ki=7.45, Kd=35.2nM
    33183 1n0s:B (2.0) BS01 FLU ? GO:0000302 ... P09464 12945055 MOAD: Kd=35.2nM
    33184 1n0t:A (2.1) BS01 AT1 ? GO:0015276 ... P19491 12519060 MOAD: ic50=12.2uM
    PDBbind: -logKd/Ki=4.91, IC50=12.2uM
    33185 1n0t:B (2.1) BS01 AT1 ? GO:0015276 ... P19491 12519060 MOAD: ic50=12.2uM
    33186 1n0t:C (2.1) BS01 AT1 ? GO:0015276 ... P19491 12519060 MOAD: ic50=12.2uM
    33187 1n0t:D (2.1) BS01 AT1 ? GO:0015276 ... P19491 12519060 MOAD: ic50=12.2uM
    33188 1n0u:A (2.12) BS01 SO1 3.6.5.- GO:0003746 ... P32324 12692531
    33189 1n0w:A (1.7) BS01 MG ? GO:0000150 ... Q06609 12442171
    33190 1n0x:H (1.8) BS01 peptide ? N/A P0DOX5 N/A
    33191 1n0x:H (1.8) BS02 peptide ? N/A P0DOX5 N/A
    33192 1n0x:K (1.8) BS01 peptide ? N/A P0DOX5 N/A
    33193 1n0x:L (1.8) BS01 peptide ? GO:0002250 ... P01834 N/A
    33194 1n0x:M (1.8) BS01 peptide ? GO:0002250 ... P01834 N/A
    33195 1n0z:A (-1.00) BS01 ZN ? N/A O95218 12657633
    33196 1n12:A (1.87) BS01 peptide ? GO:0005515 ... P08407 12437927
    33197 1n12:C (1.87) BS01 peptide ? GO:0005515 ... P08407 12437927
    33198 1n13:A (1.4) BS01 AG2 4.1.1.19 GO:0006520 ... Q57764 12623016
    33199 1n13:B (1.4) BS01 AG2 4.1.1.19 GO:0006520 ... Q57764 12623016
    33200 1n13:C (1.4) BS01 AG2 4.1.1.19 GO:0006520 ... Q57764 12623016

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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