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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29801 1lqy:A (1.9) BS01 BB2 3.5.1.88 GO:0006412 ... O31410 12126617
    29802 1lr5:A (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29803 1lr5:A (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29804 1lr5:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29805 1lr5:B (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29806 1lr5:B (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29807 1lr5:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29808 1lr5:C (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29809 1lr5:C (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29810 1lr5:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29811 1lr5:D (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29812 1lr5:D (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29813 1lr5:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29814 1lr6:A (1.9) BS01 HEM ? GO:0020037 ... P00171 12136141
    29815 1lr7:A (1.5) BS01 SO4 ? N/A P21674 12867435
    29816 1lr7:A (1.5) BS02 SO4 ? N/A P21674 12867435
    29817 1lr8:A (2.1) BS01 IHS ? N/A P21674 12867435 MOAD: Kd=10nM
    29818 1lra:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 7906540
    29819 1lrh:A (1.9) BS01 BMA ? GO:0000911 ... P13689 12065401
    29820 1lrh:A (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29821 1lrh:A (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29822 1lrh:A (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29823 1lrh:B (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29824 1lrh:B (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29825 1lrh:B (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29826 1lrh:B (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29827 1lrh:C (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29828 1lrh:C (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29829 1lrh:C (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29830 1lrh:C (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29831 1lrh:D (1.9) BS01 MAN ? GO:0000911 ... P13689 12065401
    29832 1lrh:D (1.9) BS02 MAN ? GO:0000911 ... P13689 12065401
    29833 1lrh:D (1.9) BS03 ZN ? GO:0000911 ... P13689 12065401
    29834 1lrh:D (1.9) BS04 NLA ? GO:0000911 ... P13689 12065401 MOAD: Kd=0.15uM
    29835 1lri:A (1.45) BS01 CLR ? GO:0001907 ... P15570 12198300
    29836 1lrj:A (1.9) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    29837 1lrj:A (1.9) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    29838 1lrk:A (1.75) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    29839 1lrk:A (1.75) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    29840 1lrl:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    29841 1lrl:A (1.8) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 12019271
    29842 1lrm:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 N/A
    29843 1lrm:A (2.1) BS02 HBI 1.14.16.1 GO:0004497 ... P00439 N/A
    29844 1lrn:A (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    29845 1lrn:B (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    29846 1lro:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    29847 1lro:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    29848 1lrq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    29849 1lrq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 12441100
    29850 1lrq:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    29851 1lrr:A (2.65) BS01 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29852 1lrr:A (2.65) BS02 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29853 1lrr:D (2.65) BS01 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29854 1lrr:D (2.65) BS02 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    29855 1lrt:A (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29856 1lrt:A (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    29857 1lrt:B (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29858 1lrt:B (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    29859 1lrt:C (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29860 1lrt:C (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    29861 1lrt:D (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    29862 1lrt:D (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    29863 1lru:A (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29864 1lru:A (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29865 1lru:B (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29866 1lru:B (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29867 1lru:C (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29868 1lru:C (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    29869 1lrw:A (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    29870 1lrw:A (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    29871 1lrw:C (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    29872 1lrw:C (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    29873 1lry:A (2.6) BS01 ZN 3.5.1.88 GO:0006412 ... Q9I7A8 12126617
    29874 1lry:A (2.6) BS02 BB2 3.5.1.88 GO:0006412 ... Q9I7A8 12126617
    29875 1ls1:A (1.1) BS01 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    29876 1ls1:A (1.1) BS02 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    29877 1ls3:A (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29878 1ls3:A (2.7) BS02 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    29879 1ls3:A (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29880 1ls3:A (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29881 1ls3:B (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29882 1ls3:B (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29883 1ls3:B (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29884 1ls3:C (2.7) BS01 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    29885 1ls3:C (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29886 1ls3:C (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29887 1ls3:C (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29888 1ls3:D (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29889 1ls3:D (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    29890 1ls3:D (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    29891 1ls5:A (2.8) BS01 peptide 3.4.23.39 GO:0004190 ... Q8IM16 12614616
    29892 1ls5:B (2.8) BS01 peptide 3.4.23.39 GO:0004190 ... Q8IM16 12614616
    29893 1ls6:A (1.9) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 12471039
    29894 1ls6:A (1.9) BS02 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    29895 1ls6:A (1.9) BS03 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    29896 1ls9:A (1.3) BS01 HEM ? GO:0005506 ... P83391 12475218
    29897 1lsj:A (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29898 1lsj:B (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29899 1lsl:A (1.9) BS01 FUL ? N/A P07996 12391027
    29900 1lso:A (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29901 1lso:B (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    29902 1lsp:A (2.45) BS01 BUL 3.2.1.17 GO:0003796 ... P00717 15299731
    29903 1lss:A (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29904 1lss:B (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29905 1lss:C (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29906 1lss:D (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    29907 1lst:A (1.8) BS01 LYS ? GO:0006865 ... P02911 8496186 PDBbind: -logKd/Ki=7.85, Kd=14nM
    29908 1lsu:A (2.85) BS01 NAI ? GO:0006813 ... O32080 12086676
    29909 1lsu:B (2.85) BS01 NAI ? GO:0006813 ... O32080 12086676
    29910 1lsv:A (2.4) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29911 1lsw:A (2.2) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29912 1lsx:A (2.7) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29913 1lsx:A (2.7) BS02 1MZ 2.7.13.3 GO:0006355 ... P23222 12390021
    29914 1lsz:A (2.0) BS01 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    29915 1lsz:A (2.0) BS02 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    29916 1lsz:A (2.0) BS03 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    29917 1lt0:A (2.4) BS01 CYN 2.7.13.3 GO:0006355 ... P23222 12390021
    29918 1lt0:A (2.4) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    29919 1lt1:A (1.91) BS01 MN N/A N/A N/A 12569505
    29920 1lt1:B (1.91) BS01 MN N/A N/A N/A 12569505
    29921 1lt1:C (1.91) BS01 MN N/A N/A N/A 12569505
    29922 1lt1:D (1.91) BS01 MN N/A N/A N/A 12569505
    29923 1lt1:D (1.91) BS02 MN N/A N/A N/A 12569505
    29924 1lt1:E (1.91) BS01 MN N/A N/A N/A 12569505
    29925 1lt1:F (1.91) BS01 MN N/A N/A N/A 12569505
    29926 1lt1:G (1.91) BS01 MN N/A N/A N/A 12569505
    29927 1lt1:H (1.91) BS01 MN N/A N/A N/A 12569505
    29928 1lt3:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29929 1lt3:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29930 1lt3:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29931 1lt3:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29932 1lt3:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    29933 1lt4:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29934 1lt4:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29935 1lt4:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29936 1lt4:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29937 1lt4:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    29938 1lt5:D (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29939 1lt5:E (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29940 1lt5:F (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29941 1lt5:F (1.7) BS02 GAL ? GO:0005576 ... P32890 9384564
    29942 1lt5:G (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29943 1lt5:H (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    29944 1lt6:D (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    29945 1lt6:E (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    29946 1lt6:F (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29947 1lt6:G (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29948 1lt6:H (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29949 1lt6:L (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29950 1lt6:M (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29951 1lt6:N (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29952 1lt6:O (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29953 1lt6:P (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    29954 1lt8:A (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    29955 1lt8:A (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    29956 1lt8:B (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    29957 1lt8:B (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    29958 1lt9:B (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    29959 1lt9:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    29960 1lt9:C (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    29961 1lt9:E (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    29962 1lt9:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    29963 1lt9:F (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    29964 1lta:D (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29965 1lta:E (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29966 1lta:F (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29967 1lta:G (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29968 1lta:H (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    29969 1ltd:A (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    29970 1ltd:A (2.6) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 8003966
    29971 1ltd:A (2.6) BS03 HEM 1.1.2.3 GO:0016491 ... P00175 8003966
    29972 1ltd:B (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    29973 1ltd:B (2.6) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 8003966
    29974 1lte:A (2.0) BS01 BGC ? GO:0030246 ... P16404 1948067
    29975 1lte:A (2.0) BS02 GAL ? GO:0030246 ... P16404 1948067
    29976 1lte:A (2.0) BS03 MN ? GO:0030246 ... P16404 1948067
    29977 1lte:A (2.0) BS04 CA ? GO:0030246 ... P16404 1948067
    29978 1lth:R (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29979 1lth:R (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29980 1lth:T (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29981 1lth:T (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    29982 1lti:D (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29983 1lti:E (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29984 1lti:G (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29985 1lti:H (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    29986 1ltj:B (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    29987 1ltj:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    29988 1ltj:C (2.8) BS01 peptide ? GO:0005102 ... P02679 12356313
    29989 1ltj:C (2.8) BS02 CA ? GO:0005102 ... P02679 12356313
    29990 1ltj:E (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    29991 1ltj:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    29992 1ltj:F (2.8) BS01 peptide ? GO:0005102 ... P02679 12356313
    29993 1ltj:F (2.8) BS02 CA ? GO:0005102 ... P02679 12356313
    29994 1ltk:A (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    29995 1ltk:B (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    29996 1ltk:C (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    29997 1ltl:A (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    29998 1ltl:B (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    29999 1ltl:C (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    30000 1ltl:D (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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