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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24601 1jvd:A (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83    		 GO:0003977 ... Q16222 11707391
    24602 1jvd:B (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83    		 GO:0003977 ... Q16222 11707391
    24603 1jvg:A (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83    		 GO:0003977 ... Q16222 11707391
    24604 1jvg:B (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83    		 GO:0003977 ... Q16222 11707391
    24605 1jvi:A (2.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    24606 1jvi:A (2.2) BS02 RHC 4.4.1.21 GO:0005506 ... O34667 11601850
    24607 1jvj:A (1.73) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 11870868
    24608 1jvl:A (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    24609 1jvl:B (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    24610 1jvn:B (2.1) BS01 POP 3.5.1.2
    4.3.2.10    		 GO:0000105 ... P33734 11591353
    24611 1jvo:A (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24612 1jvo:B (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24613 1jvo:C (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24614 1jvo:D (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24615 1jvo:E (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24616 1jvo:F (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24617 1jvo:G (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24618 1jvo:H (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24619 1jvo:I (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24620 1jvo:J (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24621 1jvo:K (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24622 1jvo:L (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    24623 1jvp:P (1.53) BS01 89E 2.7.11.22 GO:0000082 ... P24941 11755359
    24624 1jvq:I (2.6) BS01 peptide ? GO:0002020 ... P01008 15342247
    24625 1jvq:I (2.6) BS02 peptide ? GO:0002020 ... P01008 15342247
    24626 1jvs:A (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    24627 1jvs:A (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    24628 1jvs:B (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    24629 1jvs:B (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    24630 1jvu:A (1.78) BS01 C2P 4.6.1.18 GO:0003676 ... P61823 11746706 PDBbind: -logKd/Ki=5.15, Ki=7uM
    BindingDB: Ki=7000nM
    24631 1jvx:A (2.5) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    24632 1jvx:A (2.5) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    24633 1jvy:A (1.9) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    24634 1jvy:A (1.9) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    24635 1jvz:A (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    24636 1jvz:B (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    24637 1jw0:B (2.5) BS01 GUA 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    24638 1jw1:A (4.0) BS01 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    24639 1jw1:A (4.0) BS02 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    24640 1jw5:A (2.0) BS01 GLC ? GO:0005515 ... P0AEX9 11790091
    24641 1jw5:A (2.0) BS02 GLC ? GO:0005515 ... P0AEX9 11790091
    24642 1jw6:A (1.93) BS01 peptide ? GO:0030246 ... P02866 11732694
    24643 1jw6:A (1.93) BS02 MN ? GO:0030246 ... P02866 11732694
    24644 1jw6:A (1.93) BS03 CA ? GO:0030246 ... P02866 11732694
    24645 1jw8:A (1.3) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17680690
    24646 1jw9:B (1.7) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    24647 1jwa:B (2.9) BS01 ATP 2.7.7.80 GO:0004792 ... P12282 11713534
    24648 1jwb:B (2.1) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    24649 1jwb:B (2.1) BS02 AMP 2.7.7.80 GO:0004792 ... P12282 11713534
    24650 1jwg:A (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    24651 1jwg:B (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    24652 1jwh:A (3.1) BS01 ANP 2.7.11.1 GO:0004672 ... P68400 11574463
    24653 1jwh:C (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    24654 1jwh:D (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    24655 1jwj:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24656 1jwj:A (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    24657 1jwj:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24658 1jwj:B (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    24659 1jwk:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24660 1jwk:A (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    24661 1jwk:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    24662 1jwk:B (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    24663 1jwl:A (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    24664 1jwl:A (4.0) BS02 NPF ? GO:0000976 ... P03023 11580238
    24665 1jwl:B (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    24666 1jwl:B (4.0) BS02 dna ? GO:0000976 ... P03023 11580238
    24667 1jwl:B (4.0) BS03 NPF ? GO:0000976 ... P03023 11580238
    24668 1jwl:C (4.0) BS01 NPF ? GO:0000976 ... P03023 11580238
    24669 1jwm:A (2.7) BS01 peptide ? GO:0006955 ... P01903 12962633
    24670 1jwm:B (2.7) BS01 peptide ? GO:0006955 ... P01911 12962633
    24671 1jwn:A (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24672 1jwn:A (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24673 1jwn:B (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24674 1jwn:B (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24675 1jwn:C (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24676 1jwn:C (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24677 1jwn:D (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    24678 1jwn:D (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    24679 1jwq:A (1.8) BS01 ZN 3.5.1.28 GO:0008745 ... Q9LCR3 N/A
    24680 1jws:A (2.6) BS01 peptide ? GO:0006955 ... P01903 12962633
    24681 1jws:B (2.6) BS01 peptide ? GO:0006955 ... P01911 12962633
    24682 1jwt:A (2.5) BS01 BLI 3.4.21.5 GO:0004252 ... P00734 11720865 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    24683 1jwu:A (2.3) BS01 peptide ? GO:0006955 ... P01903 12962633
    24684 1jwu:B (2.3) BS01 peptide ? GO:0006955 ... P01911 12962633
    24685 1jwv:A (1.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 12079336
    24686 1jwy:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464    		 11689422
    24687 1jwy:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464    		 11689422
    24688 1jwy:A (2.3) BS03 ADP ? GO:0003774 ... P08799
    Q94464    		 11689422
    24689 1jwy:A (2.3) BS04 GDP ? GO:0003774 ... P08799
    Q94464    		 11689422
    24690 1jwz:A (1.8) BS01 105 3.5.2.6 GO:0005515 ... P62593 12079336
    24691 1jx0:A (2.85) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    24692 1jx1:C (2.3) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    24693 1jx2:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464    		 11689422
    24694 1jx2:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464    		 11689422
    24695 1jx2:A (2.3) BS03 ADP ? GO:0003774 ... P08799
    Q94464    		 11689422
    24696 1jx4:A (1.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24697 1jx4:A (1.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24698 1jx4:A (1.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24699 1jx4:A (1.7) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24700 1jx4:A (1.7) BS05 ADI 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24701 1jx6:A (1.5) BS01 AI2 ? GO:0005515 ... P54300 11823863
    24702 1jx9:B (2.28) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    24703 1jxa:A (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    24704 1jxa:B (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    24705 1jxd:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    24706 1jxf:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    24707 1jxg:A (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    24708 1jxg:B (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    24709 1jxi:A (2.64) BS01 HMH 2.7.1.49
    2.7.4.7    		 GO:0003824 ... P55882 11839308
    24710 1jxi:B (2.64) BS01 HMH 2.7.1.49
    2.7.4.7    		 GO:0003824 ... P55882 11839308
    24711 1jxj:A (1.99) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    24712 1jxk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    24713 1jxl:A (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24714 1jxl:A (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24715 1jxl:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24716 1jxl:A (2.1) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24717 1jxl:A (2.1) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24718 1jxl:A (2.1) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24719 1jxl:A (2.1) BS07 DG3 2.7.7.7 GO:0000287 ... Q97W02 11595188
    24720 1jxm:A (2.0) BS01 5GP ? N/A P31016 11779506
    24721 1jxn:A (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24722 1jxn:A (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24723 1jxn:A (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24724 1jxn:B (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24725 1jxn:B (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24726 1jxn:B (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24727 1jxn:C (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24728 1jxn:C (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24729 1jxn:C (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24730 1jxn:D (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    24731 1jxn:D (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    24732 1jxn:D (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    24733 1jxp:A (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26663 9568891
    24734 1jxp:A (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26663 9568891
    24735 1jxp:B (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26663 9568891
    24736 1jxp:B (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26663 9568891
    24737 1jxq:A (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    24738 1jxq:C (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    24739 1jxz:A (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24740 1jxz:A (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24741 1jxz:A (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24742 1jxz:B (1.9) BS01 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24743 1jxz:B (1.9) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24744 1jxz:B (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24745 1jxz:C (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24746 1jxz:C (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    24747 1jy7:A (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24748 1jy7:B (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24749 1jy7:C (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24750 1jy7:D (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24751 1jy7:P (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24752 1jy7:Q (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24753 1jy7:R (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24754 1jy7:S (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24755 1jy7:U (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24756 1jy7:V (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24757 1jy7:W (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    24758 1jy7:X (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    24759 1jy8:A (2.5) BS01 ZN 4.6.1.12 GO:0005515 ... P62617 11829504
    24760 1jy8:A (2.5) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 11829504
    24761 1jy8:A (2.5) BS03 CDI 4.6.1.12 GO:0005515 ... P62617 11829504
    24762 1jyb:A (2.2) BS01 FE ? GO:0005506 ... P24931 12459910
    24763 1jyb:A (2.2) BS02 FE ? GO:0005506 ... P24931 12459910
    24764 1jyb:A (2.2) BS03 ZN ? GO:0005506 ... P24931 12459910
    24765 1jyc:A (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24766 1jyc:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24767 1jyc:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24768 1jyc:B (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24769 1jyc:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24770 1jyc:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24771 1jyc:C (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24772 1jyc:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24773 1jyc:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24774 1jyc:D (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    24775 1jyc:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    24776 1jyc:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    24777 1jyi:A (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24778 1jyi:A (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24779 1jyi:A (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24780 1jyi:B (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24781 1jyi:B (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24782 1jyi:B (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24783 1jyi:C (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24784 1jyi:C (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24785 1jyi:C (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24786 1jyi:D (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    24787 1jyi:D (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    24788 1jyi:D (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    24789 1jyl:A (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24790 1jyl:A (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24791 1jyl:B (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24792 1jyl:B (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24793 1jyl:C (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24794 1jyl:C (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24795 1jyl:C (2.4) BS03 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24796 1jyl:D (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24797 1jyl:D (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    24798 1jym:A (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24799 1jym:B (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    24800 1jym:C (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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