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BioLiP
Download all results in tab-seperated text for 144 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4apz:1 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    2 4apz:1 (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    3 4apz:1 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    4 4apz:2 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    5 4apz:2 (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    6 4apz:2 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    7 4apz:3 (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    8 4apz:3 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    9 4apz:3 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    10 4apz:4 (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    11 4apz:4 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    12 4apz:4 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    13 4apz:5 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    14 4apz:5 (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    15 4apz:5 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    16 4apz:6 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    17 4apz:6 (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    18 4apz:6 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    19 4apz:7 (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    20 4apz:7 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    21 4apz:7 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    22 4apz:8 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    23 4apz:8 (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    24 4apz:8 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    25 4apz:9 (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    26 4apz:9 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    27 4apz:9 (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    28 4apz:A (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    29 4apz:A (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    30 4apz:A (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    31 4apz:B (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    32 4apz:B (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    33 4apz:B (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    34 4apz:C (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    35 4apz:C (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    36 4apz:C (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    37 4apz:D (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    38 4apz:D (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    39 4apz:D (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    40 4apz:E (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    41 4apz:E (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    42 4apz:E (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    43 4apz:F (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    44 4apz:F (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    45 4apz:F (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    46 4apz:G (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    47 4apz:G (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    48 4apz:G (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    49 4apz:H (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    50 4apz:H (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    51 4apz:H (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    52 4apz:I (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    53 4apz:I (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    54 4apz:I (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    55 4apz:J (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    56 4apz:J (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    57 4apz:J (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    58 4apz:K (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    59 4apz:K (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    60 4apz:K (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    61 4apz:L (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    62 4apz:L (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    63 4apz:L (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    64 4apz:M (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    65 4apz:M (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    66 4apz:M (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    67 4apz:N (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    68 4apz:N (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    69 4apz:N (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    70 4apz:O (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    71 4apz:O (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    72 4apz:O (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    73 4apz:P (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    74 4apz:P (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    75 4apz:P (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    76 4apz:Q (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    77 4apz:Q (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    78 4apz:Q (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    79 4apz:R (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    80 4apz:R (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    81 4apz:R (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    82 4apz:S (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    83 4apz:S (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    84 4apz:S (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    85 4apz:T (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    86 4apz:T (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    87 4apz:T (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    88 4apz:U (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    89 4apz:U (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    90 4apz:U (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    91 4apz:V (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    92 4apz:V (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    93 4apz:V (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    94 4apz:W (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    95 4apz:W (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    96 4apz:W (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    97 4apz:X (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    98 4apz:X (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    99 4apz:X (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    100 4apz:Y (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    101 4apz:Y (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    102 4apz:Y (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    103 4apz:Z (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    104 4apz:Z (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    105 4apz:Z (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    106 4apz:a (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    107 4apz:a (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    108 4apz:a (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    109 4apz:b (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    110 4apz:b (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    111 4apz:b (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    112 4apz:c (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    113 4apz:c (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    114 4apz:c (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    115 4apz:d (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    116 4apz:d (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    117 4apz:d (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    118 4apz:e (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    119 4apz:e (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    120 4apz:e (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    121 4apz:f (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    122 4apz:f (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    123 4apz:f (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    124 4apz:g (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    125 4apz:g (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    126 4apz:g (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    127 4apz:h (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    128 4apz:h (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    129 4apz:h (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    130 4apz:i (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    131 4apz:i (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    132 4apz:i (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    133 4apz:j (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    134 4apz:j (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    135 4apz:j (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    136 4apz:k (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    137 4apz:k (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    138 4apz:k (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    139 4apz:l (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    140 4apz:l (2.01) BS02 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    141 4apz:l (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    142 4apz:m (2.01) BS01 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    143 4apz:m (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    144 4apz:m (2.01) BS03 POP 3.6.1.23 GO:0000287 ... O31801 23897460
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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