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BioLiP
Download all results in tab-seperated text for 130 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8gn2:A (1.95) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 37209822
    2 8gn2:A (1.95) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    3 8gn2:A (1.95) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    4 8gn2:A (1.95) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    5 8gn2:A (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    6 8gn2:A (1.95) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    7 8gn2:A (1.95) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    8 8gn2:A (1.95) BS08 K3C 1.10.3.9 GO:0005506 ... P51765 37209822
    9 8gn2:A (1.95) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 37209822
    10 8gn2:A (1.95) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    11 8gn2:A (1.95) BS11 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    12 8gn2:B (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    13 8gn2:B (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    14 8gn2:B (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    15 8gn2:B (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    16 8gn2:B (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    17 8gn2:B (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    18 8gn2:B (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    19 8gn2:B (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    20 8gn2:B (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    21 8gn2:B (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    22 8gn2:B (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    23 8gn2:B (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    24 8gn2:B (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    25 8gn2:B (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    26 8gn2:B (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    27 8gn2:B (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    28 8gn2:C (1.95) BS01 OEX ? GO:0005737 ... D0VWR7 37209822
    29 8gn2:C (1.95) BS02 CLA ? GO:0005737 ... D0VWR7 37209822
    30 8gn2:C (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    31 8gn2:C (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    32 8gn2:C (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    33 8gn2:C (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    34 8gn2:C (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    35 8gn2:C (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    36 8gn2:C (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    37 8gn2:C (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    38 8gn2:C (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    39 8gn2:C (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    40 8gn2:C (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    41 8gn2:C (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    42 8gn2:D (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    43 8gn2:D (1.95) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    44 8gn2:D (1.95) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    45 8gn2:D (1.95) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    46 8gn2:D (1.95) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    47 8gn2:D (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    48 8gn2:D (1.95) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    49 8gn2:D (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    50 8gn2:D (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    51 8gn2:E (1.95) BS01 HEM ? GO:0005506 ... P12238 37209822
    52 8gn2:F (1.95) BS01 HEM ? GO:0005506 ... P12239 37209822
    53 8gn2:H (1.95) BS01 CLA ? GO:0009523 ... P19052 37209822
    54 8gn2:H (1.95) BS02 CLA ? GO:0009523 ... P19052 37209822
    55 8gn2:H (1.95) BS03 CLA ? GO:0009523 ... P19052 37209822
    56 8gn2:H (1.95) BS04 RRX ? GO:0009523 ... P19052 37209822
    57 8gn2:I (1.95) BS01 CLA ? GO:0005737 ... P12240 37209822
    58 8gn2:J (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    59 8gn2:K (1.95) BS01 peptide ? GO:0005737 ... P19054 37209822
    60 8gn2:K (1.95) BS02 CLA ? GO:0005737 ... P19054 37209822
    61 8gn2:K (1.95) BS03 CLA ? GO:0005737 ... P19054 37209822
    62 8gn2:O (1.95) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    63 8gn2:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 37209822
    64 8gn2:Z (1.95) BS01 peptide ? GO:0009523 ... D0VWR5 37209822
    65 8gn2:a (1.95) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 37209822
    66 8gn2:a (1.95) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    67 8gn2:a (1.95) BS03 BCT 1.10.3.9 GO:0005506 ... P51765 37209822
    68 8gn2:a (1.95) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    69 8gn2:a (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    70 8gn2:a (1.95) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    71 8gn2:a (1.95) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    72 8gn2:a (1.95) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    73 8gn2:a (1.95) BS09 K3C 1.10.3.9 GO:0005506 ... P51765 37209822
    74 8gn2:a (1.95) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    75 8gn2:a (1.95) BS11 PHO 1.10.3.9 GO:0005506 ... P51765 37209822
    76 8gn2:b (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    77 8gn2:b (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    78 8gn2:b (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    79 8gn2:b (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    80 8gn2:b (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    81 8gn2:b (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    82 8gn2:b (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    83 8gn2:b (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    84 8gn2:b (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    85 8gn2:b (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    86 8gn2:b (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    87 8gn2:b (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    88 8gn2:b (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    89 8gn2:b (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    90 8gn2:b (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    91 8gn2:b (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    92 8gn2:c (1.95) BS01 OEX ? GO:0005737 ... D0VWR7 37209822
    93 8gn2:c (1.95) BS02 CA ? GO:0005737 ... D0VWR7 37209822
    94 8gn2:c (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    95 8gn2:c (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    96 8gn2:c (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    97 8gn2:c (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    98 8gn2:c (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    99 8gn2:c (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    100 8gn2:c (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    101 8gn2:c (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    102 8gn2:c (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    103 8gn2:c (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    104 8gn2:c (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    105 8gn2:c (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    106 8gn2:c (1.95) BS15 CLA ? GO:0005737 ... D0VWR7 37209822
    107 8gn2:d (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    108 8gn2:d (1.95) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    109 8gn2:d (1.95) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    110 8gn2:d (1.95) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    111 8gn2:d (1.95) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    112 8gn2:d (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    113 8gn2:d (1.95) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    114 8gn2:d (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    115 8gn2:d (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    116 8gn2:e (1.95) BS01 HEM ? GO:0005506 ... P12238 37209822
    117 8gn2:f (1.95) BS01 HEM ? GO:0005506 ... P12239 37209822
    118 8gn2:h (1.95) BS01 CLA ? GO:0009523 ... P19052 37209822
    119 8gn2:h (1.95) BS02 CLA ? GO:0009523 ... P19052 37209822
    120 8gn2:h (1.95) BS03 CLA ? GO:0009523 ... P19052 37209822
    121 8gn2:h (1.95) BS04 RRX ? GO:0009523 ... P19052 37209822
    122 8gn2:i (1.95) BS01 CLA ? GO:0005737 ... P12240 37209822
    123 8gn2:j (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    124 8gn2:k (1.95) BS01 peptide ? GO:0005737 ... P19054 37209822
    125 8gn2:k (1.95) BS02 CLA ? GO:0005737 ... P19054 37209822
    126 8gn2:k (1.95) BS03 CLA ? GO:0005737 ... P19054 37209822
    127 8gn2:o (1.95) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    128 8gn2:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 37209822
    129 8gn2:x (1.95) BS01 CLA ? GO:0009523 ... D0VWR4 37209822
    130 8gn2:z (1.95) BS01 peptide ? GO:0009523 ... D0VWR5 37209822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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