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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5tio:A (3.25) BS01 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    2 5tio:A (3.25) BS02 GLY ? GO:0004888 ... O75311 N/A
    3 5tio:A (3.25) BS03 ZN ? GO:0004888 ... O75311 N/A
    4 5tio:A (3.25) BS04 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    5 5tio:A (3.25) BS05 GLY ? GO:0004888 ... O75311 N/A
    6 5tio:B (3.25) BS01 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    7 5tio:B (3.25) BS02 GLY ? GO:0004888 ... O75311 N/A
    8 5tio:B (3.25) BS03 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    9 5tio:B (3.25) BS04 GLY ? GO:0004888 ... O75311 N/A
    10 5tio:B (3.25) BS05 ZN ? GO:0004888 ... O75311 N/A
    11 5tio:C (3.25) BS01 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    12 5tio:C (3.25) BS02 GLY ? GO:0004888 ... O75311 N/A
    13 5tio:C (3.25) BS03 ZN ? GO:0004888 ... O75311 N/A
    14 5tio:C (3.25) BS04 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    15 5tio:C (3.25) BS05 GLY ? GO:0004888 ... O75311 N/A
    16 5tio:D (3.25) BS01 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    17 5tio:D (3.25) BS02 GLY ? GO:0004888 ... O75311 N/A
    18 5tio:D (3.25) BS03 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    19 5tio:D (3.25) BS04 ZN ? GO:0004888 ... O75311 N/A
    20 5tio:D (3.25) BS05 GLY ? GO:0004888 ... O75311 N/A
    21 5tio:E (3.25) BS01 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    22 5tio:E (3.25) BS02 GLY ? GO:0004888 ... O75311 N/A
    23 5tio:E (3.25) BS03 7C6 ? GO:0004888 ... O75311 N/A BindingDB: EC50=50nM, Kd=11nM
    24 5tio:E (3.25) BS04 GLY ? GO:0004888 ... O75311 N/A
    25 5tio:E (3.25) BS05 ZN ? GO:0004888 ... O75311 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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