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BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5b5e:A (1.87) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    2 5b5e:A (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    3 5b5e:A (1.87) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    4 5b5e:A (1.87) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    5 5b5e:A (1.87) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    6 5b5e:A (1.87) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    7 5b5e:A (1.87) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    8 5b5e:A (1.87) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    9 5b5e:A (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    10 5b5e:A (1.87) BS10 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    11 5b5e:B (1.87) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    12 5b5e:B (1.87) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    13 5b5e:B (1.87) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    14 5b5e:B (1.87) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    15 5b5e:B (1.87) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    16 5b5e:B (1.87) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    17 5b5e:B (1.87) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    18 5b5e:B (1.87) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    19 5b5e:B (1.87) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    20 5b5e:B (1.87) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    21 5b5e:B (1.87) BS11 CLA ? GO:0009521 ... D0VWR1 28102667
    22 5b5e:B (1.87) BS12 CLA ? GO:0009521 ... D0VWR1 28102667
    23 5b5e:B (1.87) BS13 CLA ? GO:0009521 ... D0VWR1 28102667
    24 5b5e:B (1.87) BS14 CLA ? GO:0009521 ... D0VWR1 28102667
    25 5b5e:B (1.87) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    26 5b5e:B (1.87) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    27 5b5e:C (1.87) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    28 5b5e:C (1.87) BS02 CLA ? GO:0005737 ... D0VWR7 28102667
    29 5b5e:C (1.87) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    30 5b5e:C (1.87) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    31 5b5e:C (1.87) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    32 5b5e:C (1.87) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    33 5b5e:C (1.87) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    34 5b5e:C (1.87) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    35 5b5e:C (1.87) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    36 5b5e:C (1.87) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    37 5b5e:C (1.87) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    38 5b5e:C (1.87) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    39 5b5e:C (1.87) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    40 5b5e:C (1.87) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    41 5b5e:D (1.87) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    42 5b5e:D (1.87) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    43 5b5e:D (1.87) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    44 5b5e:D (1.87) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    45 5b5e:D (1.87) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    46 5b5e:D (1.87) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    47 5b5e:D (1.87) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    48 5b5e:D (1.87) BS08 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    49 5b5e:D (1.87) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    50 5b5e:D (1.87) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    51 5b5e:E (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    52 5b5e:F (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    53 5b5e:H (1.87) BS01 CLA ? GO:0009523 ... P19052 28102667
    54 5b5e:H (1.87) BS02 CLA ? GO:0009523 ... P19052 28102667
    55 5b5e:H (1.87) BS03 CLA ? GO:0009523 ... P19052 28102667
    56 5b5e:H (1.87) BS04 RRX ? GO:0009523 ... P19052 28102667
    57 5b5e:I (1.87) BS01 CLA ? GO:0005737 ... P12240 28102667
    58 5b5e:J (1.87) BS01 peptide ? GO:0009523 ... Q7DGD4 28102667
    59 5b5e:J (1.87) BS02 MG ? GO:0009523 ... Q7DGD4 28102667
    60 5b5e:K (1.87) BS01 peptide ? GO:0005737 ... P19054 28102667
    61 5b5e:K (1.87) BS02 CLA ? GO:0005737 ... P19054 28102667
    62 5b5e:K (1.87) BS03 CLA ? GO:0005737 ... P19054 28102667
    63 5b5e:O (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    64 5b5e:V (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    65 5b5e:X (1.87) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    66 5b5e:X (1.87) BS02 RRX ? GO:0009523 ... D0VWR4 28102667
    67 5b5e:Z (1.87) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    68 5b5e:a (1.87) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 28102667
    69 5b5e:a (1.87) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28102667
    70 5b5e:a (1.87) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    71 5b5e:a (1.87) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    72 5b5e:a (1.87) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    73 5b5e:a (1.87) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 28102667
    74 5b5e:a (1.87) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    75 5b5e:a (1.87) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28102667
    76 5b5e:a (1.87) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    77 5b5e:a (1.87) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28102667
    78 5b5e:b (1.87) BS01 CLA ? GO:0009521 ... D0VWR1 28102667
    79 5b5e:b (1.87) BS02 CLA ? GO:0009521 ... D0VWR1 28102667
    80 5b5e:b (1.87) BS03 CLA ? GO:0009521 ... D0VWR1 28102667
    81 5b5e:b (1.87) BS04 CLA ? GO:0009521 ... D0VWR1 28102667
    82 5b5e:b (1.87) BS05 CLA ? GO:0009521 ... D0VWR1 28102667
    83 5b5e:b (1.87) BS06 CLA ? GO:0009521 ... D0VWR1 28102667
    84 5b5e:b (1.87) BS07 CLA ? GO:0009521 ... D0VWR1 28102667
    85 5b5e:b (1.87) BS08 CLA ? GO:0009521 ... D0VWR1 28102667
    86 5b5e:b (1.87) BS09 CLA ? GO:0009521 ... D0VWR1 28102667
    87 5b5e:b (1.87) BS10 CLA ? GO:0009521 ... D0VWR1 28102667
    88 5b5e:b (1.87) BS11 CLA ? GO:0009521 ... D0VWR1 28102667
    89 5b5e:b (1.87) BS12 CLA ? GO:0009521 ... D0VWR1 28102667
    90 5b5e:b (1.87) BS13 CLA ? GO:0009521 ... D0VWR1 28102667
    91 5b5e:b (1.87) BS14 CLA ? GO:0009521 ... D0VWR1 28102667
    92 5b5e:b (1.87) BS15 CLA ? GO:0009521 ... D0VWR1 28102667
    93 5b5e:b (1.87) BS16 CLA ? GO:0009521 ... D0VWR1 28102667
    94 5b5e:c (1.87) BS01 OEX ? GO:0005737 ... D0VWR7 28102667
    95 5b5e:c (1.87) BS02 CA ? GO:0005737 ... D0VWR7 28102667
    96 5b5e:c (1.87) BS03 CLA ? GO:0005737 ... D0VWR7 28102667
    97 5b5e:c (1.87) BS04 CLA ? GO:0005737 ... D0VWR7 28102667
    98 5b5e:c (1.87) BS05 CLA ? GO:0005737 ... D0VWR7 28102667
    99 5b5e:c (1.87) BS06 CLA ? GO:0005737 ... D0VWR7 28102667
    100 5b5e:c (1.87) BS07 CLA ? GO:0005737 ... D0VWR7 28102667
    101 5b5e:c (1.87) BS08 CLA ? GO:0005737 ... D0VWR7 28102667
    102 5b5e:c (1.87) BS09 CLA ? GO:0005737 ... D0VWR7 28102667
    103 5b5e:c (1.87) BS10 CLA ? GO:0005737 ... D0VWR7 28102667
    104 5b5e:c (1.87) BS11 CLA ? GO:0005737 ... D0VWR7 28102667
    105 5b5e:c (1.87) BS12 CLA ? GO:0005737 ... D0VWR7 28102667
    106 5b5e:c (1.87) BS13 CLA ? GO:0005737 ... D0VWR7 28102667
    107 5b5e:c (1.87) BS14 CLA ? GO:0005737 ... D0VWR7 28102667
    108 5b5e:c (1.87) BS15 CLA ? GO:0005737 ... D0VWR7 28102667
    109 5b5e:d (1.87) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    110 5b5e:d (1.87) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    111 5b5e:d (1.87) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    112 5b5e:d (1.87) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    113 5b5e:d (1.87) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    114 5b5e:d (1.87) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    115 5b5e:d (1.87) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    116 5b5e:d (1.87) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    117 5b5e:d (1.87) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28102667
    118 5b5e:e (1.87) BS01 HEM ? GO:0005506 ... P12238 28102667
    119 5b5e:f (1.87) BS01 HEM ? GO:0005506 ... P12239 28102667
    120 5b5e:h (1.87) BS01 CLA ? GO:0009523 ... P19052 28102667
    121 5b5e:h (1.87) BS02 CLA ? GO:0009523 ... P19052 28102667
    122 5b5e:h (1.87) BS03 CLA ? GO:0009523 ... P19052 28102667
    123 5b5e:h (1.87) BS04 CLA ? GO:0009523 ... P19052 28102667
    124 5b5e:h (1.87) BS05 CLA ? GO:0009523 ... P19052 28102667
    125 5b5e:h (1.87) BS06 RRX ? GO:0009523 ... P19052 28102667
    126 5b5e:i (1.87) BS01 CLA ? GO:0005737 ... P12240 28102667
    127 5b5e:j (1.87) BS01 MG ? GO:0009523 ... Q7DGD4 28102667
    128 5b5e:k (1.87) BS01 peptide ? GO:0005737 ... P19054 28102667
    129 5b5e:k (1.87) BS02 CLA ? GO:0005737 ... P19054 28102667
    130 5b5e:k (1.87) BS03 CLA ? GO:0005737 ... P19054 28102667
    131 5b5e:o (1.87) BS01 CA ? GO:0009523 ... D0VWR2 28102667
    132 5b5e:v (1.87) BS01 HEC ? GO:0005506 ... P0A387 28102667
    133 5b5e:x (1.87) BS01 CLA ? GO:0009523 ... D0VWR4 28102667
    134 5b5e:z (1.87) BS01 peptide ? GO:0009523 ... D0VWR5 28102667
    135 5b5e:z (1.87) BS02 CLA ? GO:0009523 ... D0VWR5 28102667
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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