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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460601 9inr:A (1.93) BS02 A1D9K N/A N/A Q13526 39229909
    460602 9inr:B (1.93) BS01 A1D9K N/A N/A Q13526 39229909
    460603 9inr:B (1.93) BS02 A1D9K N/A N/A Q13526 39229909
    460604 9int:A (1.56) BS01 GAL N/A GO:0004553 ... A0A1B1Y771 39214858
    460605 9int:A (1.56) BS02 9RN N/A GO:0004553 ... A0A1B1Y771 39214858
    460606 9int:A (1.56) BS03 G4S N/A GO:0004553 ... A0A1B1Y771 39214858
    460607 9it8:A (1.954) BS01 NO N/A N/A P80025 N/A
    460608 9it8:A (1.954) BS02 NO2 N/A N/A P80025 N/A
    460609 9it8:A (1.954) BS03 HEM N/A N/A P80025 N/A
    460610 9it8:A (1.954) BS05 OSM N/A N/A P80025 N/A
    460611 9iuk:A (3.38) BS01 A1L26 N/A N/A Q5ANA3 39242571
    460612 9iul:A (3.3) BS01 A1L26 N/A N/A Q5ANA3 39242571
    460613 9iul:A (3.3) BS02 TPF N/A N/A Q5ANA3 39242571
    460614 9ium:A (3.08) BS01 A1L26 N/A N/A Q5ANA3 39242571
    460615 9ium:A (3.08) BS02 A1L27 N/A N/A Q5ANA3 39242571
    460616 9iye:A (2.39) BS01 PAE N/A N/A A4W515 N/A
    460617 9iye:B (2.39) BS01 PAE N/A N/A A4W515 N/A
    460618 9iye:C (2.39) BS01 PAE N/A N/A A4W515 N/A
    460619 9iye:D (2.39) BS01 PAE N/A N/A A4W515 N/A
    460620 9iye:E (2.39) BS01 PAE N/A N/A A4W515 N/A
    460621 9iye:F (2.39) BS01 PAE N/A N/A A4W515 N/A
    460622 9iyf:A (2.37) BS01 PAE N/A N/A A4W515 N/A
    460623 9iyf:B (2.37) BS01 PAE N/A N/A A4W515 N/A
    460624 9iyf:C (2.37) BS01 PAE N/A N/A A4W515 N/A
    460625 9iyf:D (2.37) BS01 PAE N/A N/A A4W515 N/A
    460626 9iyf:E (2.37) BS01 PAE N/A N/A A4W515 N/A
    460627 9iyf:F (2.37) BS01 PAE N/A N/A A4W515 N/A
    460628 9iyh:A (2.25) BS01 PAE N/A N/A A4W515 N/A
    460629 9iyh:B (2.25) BS01 PAE N/A N/A A4W515 N/A
    460630 9iyh:C (2.25) BS01 PAE N/A N/A A4W515 N/A
    460631 9iyh:D (2.25) BS01 PAE N/A N/A A4W515 N/A
    460632 9iyh:E (2.25) BS01 PAE N/A N/A A4W515 N/A
    460633 9iyh:F (2.25) BS01 PAE N/A N/A A4W515 N/A
    460634 9j0u:A (2.58) BS01 PLP N/A N/A K0NPP0 N/A
    460635 9j0v:A (1.79) BS01 PLP N/A N/A K0NPP0 N/A
    460636 9j4i:A (1.96) BS01 FRU N/A N/A F8QV43 39098696
    460637 9j4i:A (1.96) BS02 FRU N/A N/A F8QV43 39098696
    460638 9j4i:A (1.96) BS03 FRU N/A N/A F8QV43 39098696
    460639 9j4i:A (1.96) BS04 FRU N/A N/A F8QV43 39098696
    460640 9j4i:A (1.96) BS05 FRU N/A N/A F8QV43 39098696
    460641 9j4i:B (1.96) BS01 FRU N/A N/A F8QV43 39098696
    460642 9j4i:B (1.96) BS02 FRU N/A N/A F8QV43 39098696
    460643 9j4i:B (1.96) BS03 FRU N/A N/A F8QV43 39098696
    460644 9j4i:B (1.96) BS04 GLC N/A N/A F8QV43 39098696
    460645 9j4i:B (1.96) BS05 FRU N/A N/A F8QV43 39098696
    460646 9j4i:B (1.96) BS06 FRU N/A N/A F8QV43 39098696
    460647 9j4i:B (1.96) BS07 FRU N/A N/A F8QV43 39098696
    460648 9j4i:B (1.96) BS08 GLC N/A N/A F8QV43 39098696
    460649 9j4i:C (1.96) BS01 FRU N/A N/A F8QV43 39098696
    460650 9j4i:C (1.96) BS02 FRU N/A N/A F8QV43 39098696
    460651 9j4i:C (1.96) BS03 FRU N/A N/A F8QV43 39098696
    460652 9j4i:C (1.96) BS04 GLC N/A N/A F8QV43 39098696
    460653 9j4i:C (1.96) BS05 FRU N/A N/A F8QV43 39098696
    460654 9j4j:A (2.803) BS01 FRU N/A N/A F8QV43 39098696
    460655 9j4j:A (2.803) BS02 FRU N/A N/A F8QV43 39098696
    460656 9j4j:A (2.803) BS03 FRU N/A N/A F8QV43 39098696
    460657 9j4j:A (2.803) BS04 FRU N/A N/A F8QV43 39098696
    460658 9j4j:A (2.803) BS05 FRU N/A N/A F8QV43 39098696
    460659 9j4j:B (2.803) BS01 GLC N/A N/A F8QV43 39098696
    460660 9j4j:B (2.803) BS02 FRU N/A N/A F8QV43 39098696
    460661 9j4j:B (2.803) BS03 FRU N/A N/A F8QV43 39098696
    460662 9j4j:B (2.803) BS04 FRU N/A N/A F8QV43 39098696
    460663 9j4j:B (2.803) BS05 FRU N/A N/A F8QV43 39098696
    460664 9j4j:B (2.803) BS06 FRU N/A N/A F8QV43 39098696
    460665 9j4j:C (2.803) BS01 FRU N/A N/A F8QV43 39098696
    460666 9j4j:C (2.803) BS02 FRU N/A N/A F8QV43 39098696
    460667 9j4k:A (2.201) BS01 FRU N/A N/A F8QV43 39098696
    460668 9j4k:A (2.201) BS02 GLC N/A N/A F8QV43 39098696
    460669 9j4k:A (2.201) BS03 FRU N/A N/A F8QV43 39098696
    460670 9j4k:A (2.201) BS04 FRU N/A N/A F8QV43 39098696
    460671 9j4k:A (2.201) BS05 FRU N/A N/A F8QV43 39098696
    460672 9j4k:B (2.201) BS01 FRU N/A N/A F8QV43 39098696
    460673 9j4k:B (2.201) BS02 GLC N/A N/A F8QV43 39098696
    460674 9j4k:B (2.201) BS03 FRU N/A N/A F8QV43 39098696
    460675 9j4k:B (2.201) BS04 FRU N/A N/A F8QV43 39098696
    460676 9j4k:C (2.201) BS01 FRU N/A N/A F8QV43 39098696
    460677 9j6i:B (2.3) BS01 H9X N/A N/A Q8VZS8 N/A
    460678 9j8e:A (2.65) BS01 BT5 N/A N/A P46363 39213703
    460679 9j8e:B (2.65) BS01 BT5 N/A N/A P46363 39213703
    460680 9j9a:A (1.75) BS01 BGC N/A N/A Q8GAX8 39276694
    460681 9j9a:A (1.75) BS02 BGC N/A N/A Q8GAX8 39276694
    460682 9j9c:A (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460683 9j9c:A (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    460684 9j9c:B (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460685 9j9c:B (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    460686 9j9c:C (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460687 9j9c:C (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    460688 9j9c:D (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460689 9j9c:D (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    460690 9j9c:E (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460691 9j9c:F (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460692 9j9c:F (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    460693 9j9c:G (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    460694 9j9k:A (3.15) BS01 T83 N/A N/A A0A8K1ZRH3 N/A
    460695 9j9k:A (3.15) BS02 U2F N/A N/A A0A8K1ZRH3 N/A
    460696 9j9k:B (3.15) BS01 T83 N/A N/A A0A8K1ZRH3 N/A
    460697 9j9k:B (3.15) BS02 U2F N/A N/A A0A8K1ZRH3 N/A
    460698 9ja1:A (2.98) BS06 ATP N/A N/A P04050 N/A
    460699 9ja1:B (2.98) BS04 ATP N/A N/A P08518 N/A
    460700 9jd2:A (1.62) BS01 MTA N/A N/A Q9YAQ8 N/A
    460701 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    460702 9jhv:A (1.65) BS01 MTA N/A N/A Q9YAQ8 N/A
    460703 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    460704 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    460705 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    460706 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    460707 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    460708 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    460709 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    460710 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    460711 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    460712 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    460713 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    460714 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    460715 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    460716 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    460717 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    460718 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    460719 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    460720 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    460721 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    460722 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    460723 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    460724 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    460725 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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