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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8001 1fxo:G (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8002 1fxo:G (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8003 1fxo:G (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8004 1fxo:H (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8005 1fxo:H (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8006 1fxo:H (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8007 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8008 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8009 1fxq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    8010 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    8011 1fxq:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    8012 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    8013 1fxr:A (2.3) BS01 SF4 ? GO:0005506 ... P00210 7803404
    8014 1fxr:B (2.3) BS01 SO4 ? GO:0005506 ... P00210 7803404
    8015 1fxr:B (2.3) BS02 SF4 ? GO:0005506 ... P00210 7803404
    8016 1fxs:A (2.3) BS01 NAP 1.1.1.271 GO:0005737 ... P32055 9862812
    8017 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    8018 1fxu:A (2.2) BS02 GU7 2.4.2.1 GO:0003824 ... P55859 11134924
    8019 1fxv:A (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    8020 1fxv:B (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    8021 1fxy:A (2.15) BS01 0G6 3.4.21.4 GO:0004252 ... P07477 9707558
    8022 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8023 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    8024 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8025 1fy7:A (2.0) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 11106757
    8026 1fyd:A (2.25) BS01 AMP 6.3.1.5 GO:0003952 ... P08164 11375500
    8027 1fyd:A (2.25) BS02 POP 6.3.1.5 GO:0003952 ... P08164 11375500
    8028 1fyf:A (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    8029 1fyf:B (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    8030 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    8031 1fyu:A (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    8032 1fyu:B (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    8033 1fz8:A (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    8034 1fz8:A (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    8035 1fz8:B (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    8036 1fz8:B (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    8037 1fz8:B (2.1) BS05 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    8038 1fz8:C (2.1) BS02 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    8039 1fz8:C (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    8040 1fz8:C (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    8041 1fz8:D (2.1) BS01 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    8042 1fz8:D (2.1) BS02 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    8043 1fz8:D (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    8044 1fz9:A (2.3) BS03 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    8045 1fz9:A (2.3) BS04 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    8046 1fz9:B (2.3) BS03 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    8047 1fz9:C (2.3) BS01 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    8048 1fz9:D (2.3) BS01 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    8049 1fz9:D (2.3) BS02 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    8050 1fzh:A (2.6) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8051 1fzh:A (2.6) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8052 1fzh:B (2.6) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8053 1fzh:B (2.6) BS05 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8054 1fzh:B (2.6) BS06 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8055 1fzi:A (3.3) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8056 1fzi:B (3.3) BS03 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8057 1fzi:B (3.3) BS04 XE 1.14.13.25 GO:0004497 ... P22869 11297413
    8058 1fzj:A (1.9) BS02 FUL ? N/A P01901 11290333
    8059 1fzk:A (1.7) BS02 FUL ? N/A P01901 11290333
    8060 1fzo:A (1.8) BS02 FUL ? N/A P01901 11290333
    8061 1fzq:A (1.7) BS01 GDP ? GO:0000139 ... Q9WUL7 11188688 MOAD: Kd=24nM
    PDBbind: -logKd/Ki=7.62, Kd=24nM
    8062 1fzu:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    8063 1fzz:A (1.86) BS01 681 3.4.21.36 GO:0004252 ... P00772 11310599
    8064 1g02:A (1.86) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    8065 1g05:B (2.45) BS06 BBH 3.4.24.17 GO:0004222 ... P08254 11327577 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    BindingDB: IC50=3.1nM
    8066 1g08:A (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    8067 1g08:B (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    8068 1g08:C (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    8069 1g08:D (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    8070 1g09:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8071 1g09:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8072 1g09:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8073 1g09:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8074 1g0a:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8075 1g0a:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8076 1g0a:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8077 1g0a:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8078 1g0b:A (1.9) BS01 HEM ? GO:0004601 ... P01958 11112521
    8079 1g0b:B (1.9) BS01 HEM ? GO:0004601 ... P02062 11112521
    8080 1g0c:A (1.9) BS01 BGC 3.2.1.4 GO:0000272 ... P19424 11501997
    8081 1g0c:A (1.9) BS02 BGC 3.2.1.4 GO:0000272 ... P19424 11501997
    8082 1g0d:A (2.5) BS01 SO4 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44
    GO:0000785 ... P52181 11080504
    8083 1g0e:A (1.6) BS02 4MZ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    8084 1g0h:A (2.3) BS03 IPD 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    8085 1g0h:B (2.3) BS03 IPD 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    8086 1g0i:A (2.4) BS04 PO4 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    8087 1g0i:A (2.4) BS05 INS 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    8088 1g0i:B (2.4) BS04 PO4 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    8089 1g0i:B (2.4) BS05 INS 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11170378
    8090 1g0n:A (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8091 1g0n:A (2.0) BS02 PHH 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=25nM
    8092 1g0n:B (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8093 1g0o:A (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8094 1g0o:A (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8095 1g0o:B (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8096 1g0o:B (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8097 1g0o:C (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8098 1g0o:C (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8099 1g0o:D (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8100 1g0o:D (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8101 1g0r:A (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8102 1g0r:B (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8103 1g0r:C (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8104 1g0r:D (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8105 1g0r:E (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8106 1g0r:G (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8107 1g0r:H (1.87) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8108 1g0v:A (2.0) BS02 MAN 3.4.23.25 GO:0000324 ... P07267 11042188
    8109 1g12:A (1.6) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    8110 1g16:A (1.8) BS02 GDP ? GO:0003924 ... P07560 11099382
    8111 1g16:B (1.8) BS01 GDP ? GO:0003924 ... P07560 11099382
    8112 1g16:C (1.8) BS01 GDP ? GO:0003924 ... P07560 11099382
    8113 1g16:D (1.8) BS02 GDP ? GO:0003924 ... P07560 11099382
    8114 1g17:A (2.0) BS02 GNP ? GO:0003924 ... P07560 11099382
    8115 1g17:B (2.0) BS02 GNP ? GO:0003924 ... P07560 11099382
    8116 1g18:A (3.8) BS01 ALF 3.1.-.- GO:0003677 ... P9WHJ3 11121488
    8117 1g18:A (3.8) BS02 ADP 3.1.-.- GO:0003677 ... P9WHJ3 11121488
    8118 1g1a:A (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    8119 1g1a:B (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    8120 1g1a:C (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    8121 1g1a:D (2.47) BS01 NAD 4.2.1.46 GO:0000166 ... Q9EU31 11243820
    8122 1g1d:A (2.04) BS02 FSB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A MOAD: Kd=0.36nM
    PDBbind: -logKd/Ki=9.44, Kd=0.36nM
    8123 1g1l:A (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8124 1g1l:A (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8125 1g1l:A (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8126 1g1l:B (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8127 1g1l:B (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8128 1g1l:B (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8129 1g1l:C (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8130 1g1l:C (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8131 1g1l:C (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8132 1g1l:D (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8133 1g1l:D (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8134 1g1l:D (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8135 1g1l:E (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8136 1g1l:E (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8137 1g1l:E (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8138 1g1l:F (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8139 1g1l:F (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8140 1g1l:F (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8141 1g1l:G (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8142 1g1l:G (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8143 1g1l:G (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8144 1g1l:H (1.77) BS01 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8145 1g1l:H (1.77) BS02 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8146 1g1l:H (1.77) BS03 DAU 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8147 1g1m:A (2.25) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    8148 1g1m:B (2.25) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    8149 1g1r:A (3.4) BS01 GAL ? N/A P16109 11081633
    8150 1g1r:A (3.4) BS02 FUC ? N/A P16109 11081633
    8151 1g1r:B (3.4) BS01 GAL ? N/A P16109 11081633
    8152 1g1r:B (3.4) BS02 SIA ? N/A P16109 11081633
    8153 1g1r:B (3.4) BS03 FUC ? N/A P16109 11081633
    8154 1g1r:D (3.4) BS01 GAL ? N/A P16109 11081633
    8155 1g1r:D (3.4) BS02 SIA ? N/A P16109 11081633
    8156 1g1s:A (1.9) BS02 GAL ? N/A P16109 11081633
    8157 1g1s:A (1.9) BS03 SIA ? N/A P16109 11081633
    8158 1g1s:A (1.9) BS04 FUC ? N/A P16109 11081633
    8159 1g1s:B (1.9) BS02 GAL ? N/A P16109 11081633
    8160 1g1s:B (1.9) BS03 SIA ? N/A P16109 11081633
    8161 1g1s:B (1.9) BS04 FUC ? N/A P16109 11081633
    8162 1g1t:A (1.5) BS01 GAL ? N/A P16581 11081633
    8163 1g1t:A (1.5) BS02 SIA ? N/A P16581 11081633
    8164 1g1t:A (1.5) BS03 FUC ? N/A P16581 11081633
    8165 1g1y:A (3.0) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    8166 1g1y:A (3.0) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    8167 1g1y:A (3.0) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    8168 1g1y:B (3.0) BS01 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    8169 1g1y:B (3.0) BS02 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    8170 1g1y:B (3.0) BS03 GLC 3.2.1.135 GO:0004553 ... Q08751 11226882
    8171 1g20:A (2.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    8172 1g20:A (2.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    8173 1g20:B (2.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    8174 1g20:C (2.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    8175 1g20:C (2.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    8176 1g20:D (2.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    8177 1g20:E (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8178 1g20:F (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8179 1g20:G (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8180 1g20:H (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8181 1g21:A (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    8182 1g21:A (3.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    8183 1g21:B (3.0) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    8184 1g21:C (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 11170380
    8185 1g21:C (3.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 11170380
    8186 1g21:D (3.0) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 11170380
    8187 1g21:E (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    8188 1g21:E (3.0) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8189 1g21:F (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8190 1g21:F (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    8191 1g21:G (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8192 1g21:G (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    8193 1g21:H (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    8194 1g21:H (3.0) BS02 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    8195 1g21:H (3.0) BS03 ATP 1.18.6.1 GO:0005524 ... P00459 11170380
    8196 1g23:A (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8197 1g23:B (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8198 1g23:C (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8199 1g23:D (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    8200 1g23:E (2.8) BS01 G1P 2.7.7.24 GO:0000166 ... Q9HU22 11118200

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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