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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460401 9fih:B (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460402 9fih:B (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460403 9fih:C (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    460404 9fih:D (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460405 9fih:D (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460406 9fih:D (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460407 9fii:A (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    460408 9fii:B (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460409 9fii:B (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460410 9fii:C (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    460411 9fii:D (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460412 9fii:D (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460413 9fij:A (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    460414 9fij:B (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460415 9fij:B (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460416 9fij:C (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    460417 9fij:D (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460418 9fij:D (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460419 9fil:A (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    460420 9fil:B (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460421 9fil:B (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460422 9fil:B (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    460423 9fil:C (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    460424 9fil:D (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460425 9fil:D (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460426 9fil:D (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    460427 9fjm:A (3.65) BS02 ADP N/A N/A P60709 N/A
    460428 9fjm:B (3.65) BS03 ADP N/A N/A P60709 N/A
    460429 9fjm:C (3.65) BS02 ADP N/A N/A P60709 N/A
    460430 9fjm:D (3.65) BS03 ADP N/A N/A P60709 N/A
    460431 9fjo:A (3.05) BS01 ADP N/A N/A P68135 N/A
    460432 9fjo:B (3.05) BS01 ADP N/A N/A P68135 N/A
    460433 9fjo:C (3.05) BS01 ADP N/A N/A P68135 N/A
    460434 9fjo:D (3.05) BS01 ADP N/A N/A P68135 N/A
    460435 9fju:A (3.84) BS02 ADP N/A N/A P60712 N/A
    460436 9fju:B (3.84) BS02 ADP N/A N/A P60712 N/A
    460437 9fju:C (3.84) BS02 ADP N/A N/A P60712 N/A
    460438 9fju:D (3.84) BS02 ADP N/A N/A P60712 N/A
    460439 9fjy:A (3.79) BS02 ADP N/A N/A P60712 N/A
    460440 9fjy:B (3.79) BS02 ADP N/A N/A P60712 N/A
    460441 9fjy:C (3.79) BS03 ADP N/A N/A P60712 N/A
    460442 9fjy:D (3.79) BS01 ADP N/A N/A P60712 N/A
    460443 9flb:A (2.5) BS01 A1IDB N/A N/A Q8TF76 N/A
    460444 9flc:A (2.18) BS01 A1IDA N/A N/A Q8TF76 N/A
    460445 9flo:A (2.9) BS01 A1IDC N/A N/A Q8TF76 N/A
    460446 9flq:A (1.85) BS01 A1IDD N/A N/A Q8TF76 N/A
    460447 9flt:A (2.4) BS01 A1IDF N/A N/A Q8TF76 N/A
    460448 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    460449 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    460450 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    460451 9fmd:U (3.3) BS01 IHP N/A GO:0000375 ... O95391 38925148
    460452 9fmm:A (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    460453 9fmm:B (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    460454 9foy:A (2.8) BS04 A1ID8 N/A N/A P9WG45
    P9WG47    		 N/A
    460455 9foy:A (2.8) BS05 A1ID9 N/A N/A P9WG45
    P9WG47    		 N/A
    460456 9foy:B (2.8) BS04 A1ID8 N/A N/A P9WG45
    P9WG47    		 N/A
    460457 9foy:B (2.8) BS05 A1ID9 N/A N/A P9WG45
    P9WG47    		 N/A
    460458 9fp6:A (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    460459 9fp6:B (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    460460 9fp6:C (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    460461 9fp6:D (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    460462 9fp6:E (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    460463 9fp6:F (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    460464 9fpz:B (2.69) BS02 IHP N/A GO:0001525 ... Q9BXJ9 N/A
    460465 9fq0:B (4.67) BS02 IHP N/A GO:0005737 ... A0A0B4J1W3 N/A
    460466 9fq9:A (1.25) BS01 A1IF1 N/A N/A P0DTC1 39146284
    460467 9fqa:A (1.47) BS01 A1IEY N/A N/A P0DTC1 39146284
    460468 9fqh:A (1.786) BS01 A1IEW N/A N/A Q13191 39132828
    460469 9fqi:A (1.954) BS01 A1IEV N/A N/A Q13191 39132828
    460470 9fqj:A (1.563) BS01 A1IE5 N/A N/A Q13191 39132828
    460471 9fqj:B (1.563) BS01 A1IE5 N/A N/A Q13191 39132828
    460472 9fr2:A (1.6) BS01 A1IE9 N/A N/A P24941 N/A
    460473 9fst:K (2.75) BS01 A1IF8 N/A N/A P30656 N/A
    460474 9fst:N (2.75) BS01 A1IF8 N/A N/A P28065
    P38624    		 N/A
    460475 9fst:Y (2.75) BS01 A1IF8 N/A N/A P30656 N/A
    460476 9fst:b (2.75) BS01 A1IF8 N/A N/A P28065
    P38624    		 N/A
    460477 9fsv:H (2.75) BS01 A1IFL N/A N/A P25043
    P40306    		 N/A
    460478 9fsv:K (2.75) BS02 A1IFL N/A N/A P30656 N/A
    460479 9fsv:V (2.75) BS02 A1IFL N/A N/A P25043
    P40306    		 N/A
    460480 9fsv:Y (2.75) BS02 A1IFL N/A N/A P30656 N/A
    460481 9ft0:H (2.75) BS01 A1IFL N/A N/A P25043 N/A
    460482 9ft0:K (2.75) BS02 A1IFL N/A N/A P30656 N/A
    460483 9ft0:V (2.75) BS02 A1IFL N/A N/A P25043 N/A
    460484 9ft0:Y (2.75) BS02 A1IFL N/A N/A P30656 N/A
    460485 9ft1:H (2.6) BS01 A1IFK N/A N/A P25043 N/A
    460486 9ft1:I (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    460487 9ft1:K (2.6) BS02 A1IFK N/A N/A P30656 N/A
    460488 9ft1:L (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    460489 9ft1:V (2.6) BS01 A1IFK N/A N/A P25043 N/A
    460490 9ft1:W (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    460491 9ft1:Y (2.6) BS02 A1IFK N/A N/A P30656 N/A
    460492 9ft1:Z (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    460493 9fvo:A (1.8) BS01 478 N/A N/A P11838 N/A
    460494 9fwg:A (3.2) BS01 A1IG2 N/A GO:0000122 ... O60341 38619005
    460495 9fwx:A (1.25) BS01 A1IGX N/A N/A O60885 39069741
    460496 9fxi:A (3.06) BS02 S77 N/A N/A Q16769 39125848
    460497 9fxi:B (3.06) BS01 S77 N/A N/A Q16769 39125848
    460498 9fxi:C (3.06) BS02 S77 N/A N/A Q16769 39125848
    460499 9fxj:A (3.06) BS02 PBD N/A N/A Q16769 39125848
    460500 9fxj:B (3.06) BS02 PBD N/A N/A Q16769 39125848
    460501 9fxj:C (3.06) BS02 PBD N/A N/A Q16769 39125848
    460502 9fxp:A (1.88) BS01 5WX N/A N/A O60885 39069741
    460503 9fyb:A (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    460504 9fyb:B (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    460505 9fyf:A (2.7) BS01 A1IG6 N/A N/A P68400 N/A
    460506 9fyf:B (2.7) BS01 A1IG6 N/A N/A P68400 N/A
    460507 9g0k:A (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    460508 9g0k:B (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    460509 9g11:A (3.2) BS01 BGC N/A N/A Q9SFG0 N/A
    460510 9g11:A (3.2) BS02 Y01 N/A N/A Q9SFG0 N/A
    460511 9g11:A (3.2) BS03 Y01 N/A N/A Q9SFG0 N/A
    460512 9g11:A (3.2) BS04 Y01 N/A N/A Q9SFG0 N/A
    460513 9g34:A (1.3) BS01 017 N/A N/A P11838 N/A
    460514 9g34:B (1.3) BS01 017 N/A N/A P11838 N/A
    460515 9g35:A (1.5) BS01 AB1 N/A N/A P11838 N/A
    460516 9g7h:A (1.75) BS01 AR6 N/A N/A Q8N6T7 38940296
    460517 9g7h:A (1.75) BS03 A1IIZ N/A N/A Q8N6T7 38940296
    460518 9g7h:B (1.75) BS01 AR6 N/A N/A Q8N6T7 38940296
    460519 9gac:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    460520 9gac:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    460521 9gaf:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    460522 9gaf:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    460523 9gbe:A (1.58) BS01 A1IJ8 N/A N/A Q9UM73 N/A
    460524 9gd1:W (4.0) BS03 ADP N/A N/A P32657 39270644
    460525 9gd1:W (4.0) BS04 BEF N/A N/A P32657 39270644
    460526 9gd2:W (4.2) BS04 ADP N/A N/A P32657 39270644
    460527 9gd2:W (4.2) BS05 BEF N/A N/A P32657 39270644
    460528 9gd3:W (3.0) BS03 ADP N/A N/A P32657 39270644
    460529 9gd3:W (3.0) BS04 BEF N/A N/A P32657 39270644
    460530 9gj2:A (1.15) BS01 KH0 N/A N/A P25774 N/A
    460531 9gj2:B (1.15) BS01 KH0 N/A N/A P25774 N/A
    460532 9gny:A (1.8) BS01 CFF N/A N/A P0DTD1 N/A
    460533 9gny:A (1.8) BS02 SAM N/A N/A P0DTD1 N/A
    460534 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    460535 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    460536 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    460537 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    460538 9grp:A (2.1) BS01 SAM N/A N/A P0DTD1 N/A
    460539 9grp:A (2.1) BS02 A1IOQ N/A N/A P0DTD1 N/A
    460540 9grq:A (1.85) BS01 TEP N/A N/A P0DTD1 N/A
    460541 9grq:A (1.85) BS02 SAM N/A N/A P0DTD1 N/A
    460542 9gss:A (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    460543 9gss:B (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    460544 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    460545 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    460546 9ica:A (3.0) BS04 STP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    460547 9icb:A (3.2) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    460548 9icc:A (3.1) BS03 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    460549 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    PDBbind: -logKd/Ki=3.90, Kd=125uM
    460550 9icf:A (3.0) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460551 9icg:A (3.0) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    460552 9ich:A (2.9) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    460553 9icn:A (3.0) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460554 9icq:A (2.9) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460555 9icr:A (3.0) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460556 9ics:A (2.9) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460557 9ict:A (3.0) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460558 9icu:A (2.9) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    460559 9icv:A (2.7) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    460560 9iie:A (3.14) BS01 BMA N/A N/A P0DOX5 N/A
    460561 9iie:A (3.14) BS02 GAL N/A N/A P0DOX5 N/A
    460562 9iie:B (3.14) BS01 BMA N/A N/A P0DOX5 N/A
    460563 9iil:A (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460564 9iil:B (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460565 9iil:C (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460566 9iil:D (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460567 9iim:A (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460568 9iim:B (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460569 9iim:C (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460570 9iim:D (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    460571 9iiw:R (3.15) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    460572 9iiw:R (3.15) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    460573 9iix:R (2.89) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    460574 9iix:R (2.89) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    460575 9ij6:A (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    460576 9ij6:B (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    460577 9ij6:C (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    460578 9ij6:D (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    460579 9ij9:R (2.7) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    460580 9ij9:R (2.7) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    460581 9ija:R (3.05) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    460582 9ija:R (3.05) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    460583 9ijd:R (2.76) BS01 CAU N/A N/A P13945 39046191
    460584 9ije:R (2.34) BS01 ALE N/A N/A P13945 39046191
    460585 9ijp:C (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    460586 9ijp:L (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    460587 9ik1:A (2.61) BS01 A1L2M N/A N/A P56373 39102524
    460588 9ik1:A (2.61) BS02 ATP N/A N/A P56373 39102524
    460589 9ik1:B (2.61) BS01 A1L2M N/A N/A P56373 39102524
    460590 9ik1:B (2.61) BS02 ATP N/A N/A P56373 39102524
    460591 9ik1:C (2.61) BS01 ATP N/A N/A P56373 39102524
    460592 9ik2:A (1.8) BS01 A1D9H N/A N/A P0DTC1 N/A
    460593 9ima:A (2.65) BS01 CLR N/A N/A Q9NZD1 39181182
    460594 9ima:A (2.65) BS02 CLR N/A N/A Q9NZD1 39181182
    460595 9ima:A (2.65) BS03 CLR N/A N/A Q9NZD1 39181182
    460596 9ima:B (2.65) BS01 CLR N/A N/A Q9NZD1 39181182
    460597 9ima:B (2.65) BS02 CLR N/A N/A Q9NZD1 39181182
    460598 9ima:B (2.65) BS03 CLR N/A N/A Q9NZD1 39181182
    460599 9imj:A (2.8) BS02 ANP N/A N/A A0A346FJ89 N/A
    460600 9inr:A (1.93) BS01 A1D9K N/A N/A Q13526 39229909
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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