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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460001 9evx:V (1.71) BS01 HEC ? N/A P0A386 38900892
    460002 9evx:a (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    460003 9evx:a (1.71) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    460004 9evx:a (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    460005 9evx:a (1.71) BS05 OEX 1.10.3.9 GO:0005506 ... P0A444 38900892
    460006 9evx:a (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    460007 9evx:a (1.71) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    460008 9evx:a (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    460009 9evx:a (1.71) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    460010 9evx:a (1.71) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 38900892
    460011 9evx:b (1.71) BS01 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460012 9evx:b (1.71) BS02 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460013 9evx:b (1.71) BS03 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460014 9evx:b (1.71) BS04 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460015 9evx:b (1.71) BS05 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460016 9evx:b (1.71) BS06 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460017 9evx:b (1.71) BS07 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460018 9evx:b (1.71) BS08 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460019 9evx:b (1.71) BS09 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460020 9evx:b (1.71) BS10 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460021 9evx:b (1.71) BS11 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460022 9evx:b (1.71) BS12 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460023 9evx:b (1.71) BS13 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460024 9evx:b (1.71) BS14 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460025 9evx:b (1.71) BS15 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460026 9evx:b (1.71) BS16 CLA ? GO:0009523 ... Q8DIQ1 38900892
    460027 9evx:c (1.71) BS01 OEX ? GO:0005737 ... Q8DIF8 38900892
    460028 9evx:c (1.71) BS02 CLA ? GO:0005737 ... Q8DIF8 38900892
    460029 9evx:c (1.71) BS03 CLA ? GO:0005737 ... Q8DIF8 38900892
    460030 9evx:c (1.71) BS04 CLA ? GO:0005737 ... Q8DIF8 38900892
    460031 9evx:c (1.71) BS05 CLA ? GO:0005737 ... Q8DIF8 38900892
    460032 9evx:c (1.71) BS06 CLA ? GO:0005737 ... Q8DIF8 38900892
    460033 9evx:c (1.71) BS07 CLA ? GO:0005737 ... Q8DIF8 38900892
    460034 9evx:c (1.71) BS08 CLA ? GO:0005737 ... Q8DIF8 38900892
    460035 9evx:c (1.71) BS09 CLA ? GO:0005737 ... Q8DIF8 38900892
    460036 9evx:c (1.71) BS10 CLA ? GO:0005737 ... Q8DIF8 38900892
    460037 9evx:c (1.71) BS11 CLA ? GO:0005737 ... Q8DIF8 38900892
    460038 9evx:c (1.71) BS12 CLA ? GO:0005737 ... Q8DIF8 38900892
    460039 9evx:c (1.71) BS13 CLA ? GO:0005737 ... Q8DIF8 38900892
    460040 9evx:c (1.71) BS14 CLA ? GO:0005737 ... Q8DIF8 38900892
    460041 9evx:d (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460042 9evx:d (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460043 9evx:d (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460044 9evx:d (1.71) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460045 9evx:d (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460046 9evx:d (1.71) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460047 9evx:d (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460048 9evx:d (1.71) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    460049 9evx:e (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    460050 9evx:f (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    460051 9evx:h (1.71) BS01 CLA ? GO:0009523 ... Q8DJ43 38900892
    460052 9evx:h (1.71) BS02 CLA ? GO:0009523 ... Q8DJ43 38900892
    460053 9evx:h (1.71) BS03 CLA ? GO:0009523 ... Q8DJ43 38900892
    460054 9evx:h (1.71) BS04 CLA ? GO:0009523 ... Q8DJ43 38900892
    460055 9evx:i (1.71) BS01 CLA ? GO:0005737 ... Q8DJZ6 38900892
    460056 9evx:k (1.71) BS02 CLA ? GO:0005737 ... Q9F1K9 38900892
    460057 9evx:k (1.71) BS03 CLA ? GO:0005737 ... Q9F1K9 38900892
    460058 9evx:v (1.71) BS01 HEC ? N/A P0A386 38900892
    460059 9ex0:A (1.45) BS02 A1ICR N/A GO:0003796 ... P00698 38842919
    460060 9ex0:A (1.45) BS03 VO4 N/A GO:0003796 ... P00698 38842919
    460061 9ex1:A (1.785) BS01 A1H8D N/A GO:0003796 ... P00698 38842919
    460062 9ex2:A (1.172) BS02 VO4 N/A GO:0003796 ... P00698 38842919
    460063 9ex2:A (1.172) BS03 A1H8D N/A GO:0003796 ... P00698 38842919
    460064 9ex2:A (1.172) BS04 A1H8D N/A GO:0003796 ... P00698 38842919
    460065 9ex2:A (1.172) BS05 VO4 N/A GO:0003796 ... P00698 38842919
    460066 9ex2:A (1.172) BS06 VO4 N/A GO:0003796 ... P00698 38842919
    460067 9exw:A (2.43) BS01 A1H7X 2.1.1.357 N/A O96028 38748070
    460068 9exw:B (2.43) BS01 A1H7X 2.1.1.357 N/A O96028 38748070
    460069 9exw:B (2.43) BS02 A1H7X 2.1.1.357 N/A O96028 38748070
    460070 9exx:A (1.943) BS01 A1H7Y 2.1.1.357 N/A O96028 38748070
    460071 9exx:B (1.943) BS01 A1H7Y 2.1.1.357 N/A O96028 38748070
    460072 9exx:B (1.943) BS02 A1H7Y 2.1.1.357 N/A O96028 38748070
    460073 9exy:A (1.699) BS01 A1H7Z 2.1.1.357 N/A O96028 38748070
    460074 9exy:B (1.699) BS01 A1H7Z 2.1.1.357 N/A O96028 38748070
    460075 9ey3:A (1.16) BS01 A1H70 5.2.1.8 N/A Q13451 38837733
    460076 9ey4:A (1.16) BS01 A1H78 5.2.1.8 N/A Q13451 38837733
    460077 9ey5:A (2.61) BS01 OTY 1.14.18.- N/A P17643 38642076
    460078 9ey6:A (2.228) BS01 FUC 1.14.18.- N/A P17643 38642076
    460079 9ey7:A (2.61) BS05 OTY 1.14.18.- N/A P17643 38642076
    460080 9ey8:AA (2.2) BS01 FUC 1.14.18.- GO:0016491 ... P17643 38642076
    460081 9ey8:CA (2.2) BS01 TY2 1.14.18.- GO:0016491 ... P17643 38642076
    460082 9eyr:A (2.56) BS02 A1H75 N/A N/A Q9PTN2 38858308
    460083 9eyu:A (2.35) BS01 A1H8A N/A N/A O14744 39080842
    460084 9eyu:A (2.35) BS02 MTA N/A N/A O14744 39080842
    460085 9eyv:A (2.15) BS01 A1H76 N/A N/A O14744 39080842
    460086 9eyv:A (2.15) BS02 MTA N/A N/A O14744 39080842
    460087 9eyw:A (2.3) BS01 A1H8B N/A N/A O14744 39080842
    460088 9eyw:A (2.3) BS02 MTA N/A N/A O14744 39080842
    460089 9eyx:A (2.2) BS01 A1H73 N/A N/A O14744 39080842
    460090 9eyx:A (2.2) BS02 MTA N/A N/A O14744 39080842
    460091 9ez1:A (1.95) BS02 A1H9P N/A N/A Q9PTN2 38785958
    460092 9ez2:A (1.8) BS02 A1H72 N/A N/A Q9PTN2 38785958
    460093 9ez3:A (2.7) BS01 A1H74 N/A N/A P49761 N/A
    460094 9ezg:A (2.18) BS01 A1H8C N/A N/A P68400 38959455
    460095 9ezg:B (2.18) BS01 A1H8C N/A N/A P68400 38959455
    460096 9ezj:A (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    460097 9ezj:A (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    460098 9ezj:B (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    460099 9ezj:B (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    460100 9ezj:C (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    460101 9ezj:C (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    460102 9ezj:D (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    460103 9ezj:D (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    460104 9f0f:A (2.1) BS01 HT9 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    460105 9f0g:A (1.85) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    460106 9f14:A (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460107 9f14:B (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460108 9f17:A (1.7) BS02 GDP N/A N/A P56137 39062851
    460109 9f17:A (1.7) BS03 IMP N/A N/A P56137 39062851
    460110 9f17:B (1.7) BS02 IMP N/A N/A P56137 39062851
    460111 9f17:B (1.7) BS03 GDP N/A N/A P56137 39062851
    460112 9f1b:B (3.01) BS03 GTP N/A N/A G1SZF4 39169182
    460113 9f1b:DB (3.01) BS02 IHP N/A N/A Q9BXJ9 39169182
    460114 9f1c:B (3.78) BS03 GTP N/A N/A G1SZF4 39169182
    460115 9f1c:DB (3.78) BS02 IHP N/A N/A Q9BXJ9 39169182
    460116 9f1d:B (3.26) BS03 GTP N/A N/A G1SZF4 39169182
    460117 9f1d:DB (3.26) BS02 IHP N/A N/A Q9BXJ9 39169182
    460118 9f1i:H (1.38) BS02 FUC N/A N/A N/A 39020051
    460119 9f1i:H (1.38) BS03 PFX N/A N/A N/A 39020051
    460120 9f1i:I (1.38) BS02 FUC N/A N/A N/A 39020051
    460121 9f1i:I (1.38) BS03 PFX N/A N/A N/A 39020051
    460122 9f1j:A (1.13003) BS01 A1H84 N/A N/A O60885 N/A
    460123 9f1k:A (1.61) BS01 A1H81 N/A N/A O60885 N/A
    460124 9f1l:A (1.30001) BS01 A1H83 N/A N/A O60885 N/A
    460125 9f1m:A (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    460126 9f1m:B (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    460127 9f1m:C (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    460128 9f1m:D (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    460129 9f1n:A (1.71) BS01 A1H9H N/A N/A O60885 N/A
    460130 9f1n:B (1.71) BS01 A1H9H N/A N/A O60885 N/A
    460131 9f1n:C (1.71) BS01 A1H9H N/A N/A O60885 N/A
    460132 9f1n:D (1.71) BS01 A1H9H N/A N/A O60885 N/A
    460133 9f2k:A (2.48) BS01 NAD N/A N/A G0SDP4 39145930
    460134 9f2r:C (1.959) BS02 MGT N/A N/A H6QM90 N/A
    460135 9f33:R (3.05) BS01 A1H9N N/A N/A P35462
    P42212    		 39237617
    460136 9f34:R (3.09) BS01 A1H9N N/A N/A P35462
    P42212    		 39237617
    460137 9f37:B (1.905) BS03 CTP N/A N/A H6QM91 N/A
    460138 9f37:B (1.905) BS04 GTP N/A N/A H6QM91 N/A
    460139 9f37:C (1.905) BS02 MGT N/A N/A H6QM90 N/A
    460140 9f3w:A (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460141 9f3w:B (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460142 9f3w:C (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460143 9f3w:D (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460144 9f3w:E (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460145 9f3w:F (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460146 9f3w:G (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460147 9f3w:H (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460148 9f3x:A (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460149 9f3x:B (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460150 9f3x:C (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460151 9f3x:D (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460152 9f3x:E (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460153 9f3x:F (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460154 9f3x:G (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460155 9f3x:H (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460156 9f3y:A (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460157 9f3y:B (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460158 9f3y:C (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460159 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460160 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460161 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460162 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460163 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    460164 9f40:A (2.44) BS01 MAN ? N/A Q12200 N/A
    460165 9f40:A (2.44) BS02 ERG ? N/A Q12200 N/A
    460166 9f40:B (2.44) BS02 ERG ? N/A Q12200 N/A
    460167 9f40:C (2.44) BS01 ERG ? N/A Q12200 N/A
    460168 9f40:D (2.44) BS01 MAN ? N/A Q12200 N/A
    460169 9f40:D (2.44) BS03 ERG ? N/A Q12200 N/A
    460170 9f41:A (2.64) BS01 CLR ? N/A Q12200 N/A
    460171 9f41:B (2.64) BS01 CLR ? N/A Q12200 N/A
    460172 9f41:C (2.64) BS01 MAN ? N/A Q12200 N/A
    460173 9f41:C (2.64) BS02 CLR ? N/A Q12200 N/A
    460174 9f41:D (2.64) BS01 MAN ? N/A Q12200 N/A
    460175 9f41:D (2.64) BS03 CLR ? N/A Q12200 N/A
    460176 9f44:A (3.68) BS01 IHP N/A N/A P42345 39141345
    460177 9f44:B (3.68) BS01 IHP N/A N/A P42345 39141345
    460178 9f45:A (3.74) BS01 IHP N/A N/A P42345 39141345
    460179 9f45:B (3.74) BS01 IHP N/A N/A P42345 39141345
    460180 9f4d:A (1.5) BS01 JH1 ? GO:0003676 ... P09651 N/A
    460181 9f4e:A (1.57) BS01 VZM ? GO:0003676 ... P09651 N/A
    460182 9f4f:A (1.4) BS01 A1H9T ? GO:0003676 ... P09651 N/A
    460183 9f4g:A (1.4) BS01 SZE ? GO:0003676 ... P09651 N/A
    460184 9f4h:A (1.4) BS01 NUY ? GO:0003676 ... P09651 N/A
    460185 9f4h:A (1.4) BS02 NUY ? GO:0003676 ... P09651 N/A
    460186 9f4j:A (1.4) BS01 NWP ? GO:0003676 ... P09651 N/A
    460187 9f4k:A (1.8) BS01 A1H9R ? GO:0003676 ... P09651 N/A
    460188 9f4l:A (1.4) BS01 WGP ? GO:0003676 ... P09651 N/A
    460189 9f4m:A (1.39) BS01 A1H97 ? GO:0003676 ... P09651 N/A
    460190 9f4n:A (1.4) BS01 O3J ? GO:0003676 ... P09651 N/A
    460191 9f4o:A (1.4) BS01 A1H95 ? GO:0003676 ... P09651 N/A
    460192 9f4p:A (1.4) BS01 Q49 ? GO:0003676 ... P09651 N/A
    460193 9f4q:A (1.4) BS01 A1H9S ? GO:0003676 ... P09651 N/A
    460194 9f4r:A (1.59) BS01 K3J ? GO:0003676 ... P09651 N/A
    460195 9f4s:A (1.4) BS01 JGA ? GO:0003676 ... P09651 N/A
    460196 9f4t:A (1.42) BS01 WZY ? GO:0003676 ... P09651 N/A
    460197 9f4u:A (1.4) BS01 LXA ? GO:0003676 ... P09651 N/A
    460198 9f4v:A (1.4) BS01 UQJ ? GO:0003676 ... P09651 N/A
    460199 9f4w:A (1.6) BS01 O0M ? GO:0003676 ... P09651 N/A
    460200 9f4x:A (1.6) BS01 HWH ? GO:0003676 ... P09651 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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