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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    459801 9esm:L (3.06) BS03 BDP N/A N/A N/A 38992036
    459802 9esm:M (3.06) BS01 BGC N/A N/A N/A 38992036
    459803 9esm:N (3.06) BS01 BDP N/A N/A N/A 38992036
    459804 9esm:N (3.06) BS02 BGC N/A N/A N/A 38992036
    459805 9esm:N (3.06) BS03 BGC N/A N/A N/A 38992036
    459806 9esm:O (3.06) BS01 BGC N/A N/A N/A 38992036
    459807 9esm:O (3.06) BS02 BGC N/A N/A N/A 38992036
    459808 9esm:P (3.06) BS01 BGC N/A N/A N/A 38992036
    459809 9esm:P (3.06) BS02 BGC N/A N/A N/A 38992036
    459810 9esm:Q (3.06) BS01 BDP N/A N/A N/A 38992036
    459811 9esm:Q (3.06) BS02 BGC N/A N/A N/A 38992036
    459812 9esm:Q (3.06) BS03 BGC N/A N/A N/A 38992036
    459813 9esm:R (3.06) BS01 BGC N/A N/A N/A 38992036
    459814 9esm:R (3.06) BS02 BGC N/A N/A N/A 38992036
    459815 9esm:S (3.06) BS01 BGC N/A N/A N/A 38992036
    459816 9esm:S (3.06) BS02 BGC N/A N/A N/A 38992036
    459817 9esm:T (3.06) BS01 BGC N/A N/A N/A 38992036
    459818 9esm:U (3.06) BS01 BGC N/A N/A N/A 38992036
    459819 9esm:U (3.06) BS02 BGC N/A N/A N/A 38992036
    459820 9esm:V (3.06) BS01 BGC N/A N/A N/A 38992036
    459821 9esm:V (3.06) BS02 BGC N/A N/A N/A 38992036
    459822 9esm:W (3.06) BS01 BGC N/A N/A N/A 38992036
    459823 9esm:W (3.06) BS02 BGC N/A N/A N/A 38992036
    459824 9esm:X (3.06) BS01 BDP N/A N/A N/A 38992036
    459825 9esm:X (3.06) BS02 BGC N/A N/A N/A 38992036
    459826 9esm:X (3.06) BS03 BGC N/A N/A N/A 38992036
    459827 9esm:Y (3.06) BS01 BGC N/A N/A N/A 38992036
    459828 9esm:Y (3.06) BS02 BGC N/A N/A N/A 38992036
    459829 9est:A (1.9) BS02 IBR 3.4.21.36 GO:0004252 ... P00772 1998677
    459830 9etu:A (3.33) BS01 BGC N/A N/A N/A 38992036
    459831 9etu:A (3.33) BS02 BGC N/A N/A N/A 38992036
    459832 9etu:B (3.33) BS01 BGC N/A N/A N/A 38992036
    459833 9etu:B (3.33) BS02 BGC N/A N/A N/A 38992036
    459834 9etu:C (3.33) BS01 BGC N/A N/A N/A 38992036
    459835 9etu:C (3.33) BS02 BGC N/A N/A N/A 38992036
    459836 9etu:D (3.33) BS01 BGC N/A N/A N/A 38992036
    459837 9etu:D (3.33) BS02 BGC N/A N/A N/A 38992036
    459838 9etu:E (3.33) BS01 BGC N/A N/A N/A 38992036
    459839 9etu:E (3.33) BS02 BGC N/A N/A N/A 38992036
    459840 9etu:F (3.33) BS01 BGC N/A N/A N/A 38992036
    459841 9etu:F (3.33) BS02 BGC N/A N/A N/A 38992036
    459842 9etu:G (3.33) BS01 BGC N/A N/A N/A 38992036
    459843 9etu:G (3.33) BS02 BGC N/A N/A N/A 38992036
    459844 9etu:H (3.33) BS01 BGC N/A N/A N/A 38992036
    459845 9etu:H (3.33) BS02 BGC N/A N/A N/A 38992036
    459846 9etu:I (3.33) BS01 BGC N/A N/A N/A 38992036
    459847 9etu:I (3.33) BS02 BGC N/A N/A N/A 38992036
    459848 9etu:J (3.33) BS01 BGC N/A N/A N/A 38992036
    459849 9etu:J (3.33) BS02 BGC N/A N/A N/A 38992036
    459850 9etu:K (3.33) BS01 BGC N/A N/A N/A 38992036
    459851 9etu:K (3.33) BS02 BGC N/A N/A N/A 38992036
    459852 9etu:L (3.33) BS01 BGC N/A N/A N/A 38992036
    459853 9etu:L (3.33) BS02 BGC N/A N/A N/A 38992036
    459854 9etu:M (3.33) BS01 BGC N/A N/A N/A 38992036
    459855 9etu:N (3.33) BS01 BGC N/A N/A N/A 38992036
    459856 9etu:N (3.33) BS02 BGC N/A N/A N/A 38992036
    459857 9etu:O (3.33) BS01 BGC N/A N/A N/A 38992036
    459858 9etu:O (3.33) BS02 BGC N/A N/A N/A 38992036
    459859 9etu:P (3.33) BS01 BGC N/A N/A N/A 38992036
    459860 9etu:P (3.33) BS02 BGC N/A N/A N/A 38992036
    459861 9etu:Q (3.33) BS01 BGC N/A N/A N/A 38992036
    459862 9etu:Q (3.33) BS02 BGC N/A N/A N/A 38992036
    459863 9etu:R (3.33) BS01 BGC N/A N/A N/A 38992036
    459864 9etu:S (3.33) BS01 BGC N/A N/A N/A 38992036
    459865 9etu:S (3.33) BS02 BGC N/A N/A N/A 38992036
    459866 9etu:T (3.33) BS01 BGC N/A N/A N/A 38992036
    459867 9etu:T (3.33) BS02 BGC N/A N/A N/A 38992036
    459868 9etu:U (3.33) BS01 BGC N/A N/A N/A 38992036
    459869 9etu:U (3.33) BS02 BGC N/A N/A N/A 38992036
    459870 9etu:V (3.33) BS01 BGC N/A N/A N/A 38992036
    459871 9etu:V (3.33) BS02 BGC N/A N/A N/A 38992036
    459872 9etu:W (3.33) BS01 BGC N/A N/A N/A 38992036
    459873 9etu:W (3.33) BS02 BGC N/A N/A N/A 38992036
    459874 9etu:X (3.33) BS01 BGC N/A N/A N/A 38992036
    459875 9etu:X (3.33) BS02 BGC N/A N/A N/A 38992036
    459876 9etu:Y (3.33) BS01 BGC N/A N/A N/A 38992036
    459877 9etu:Y (3.33) BS02 BGC N/A N/A N/A 38992036
    459878 9eu5:A (3.0) BS01 5JK N/A N/A Q64610 39008358
    459879 9eu6:A (1.54) BS01 A1H7U 5.2.1.8 N/A Q13451 38818693
    459880 9eu7:A (2.21) BS01 A1H7A 5.2.1.8 N/A Q13451 38818693
    459881 9eu7:B (2.21) BS01 A1H7A 5.2.1.8 N/A Q13451 38818693
    459882 9eu7:B (2.21) BS02 A1H7A 5.2.1.8 N/A Q13451 38818693
    459883 9eu8:A (2.3) BS01 A1H7B 5.2.1.8 N/A Q13451 38818693
    459884 9eu8:B (2.3) BS01 A1H7B 5.2.1.8 N/A Q13451 38818693
    459885 9eu9:A (1.8) BS01 A1H7C 5.2.1.8 N/A Q13451 38818693
    459886 9eu9:B (1.8) BS01 A1H7C 5.2.1.8 N/A Q13451 38818693
    459887 9eua:A (2.5) BS01 A1H7D 5.2.1.8 N/A Q13451 38818693
    459888 9eua:B (2.5) BS01 A1H7D 5.2.1.8 N/A Q13451 38818693
    459889 9eub:A (2.0) BS01 A1H7E 5.2.1.8 N/A Q13451 38818693
    459890 9eub:B (2.0) BS01 A1H7E 5.2.1.8 N/A Q13451 38818693
    459891 9euc:A (2.4) BS01 A1H7F 5.2.1.8 N/A Q13451 38818693
    459892 9euc:B (2.4) BS01 A1H7F 5.2.1.8 N/A Q13451 38818693
    459893 9eud:A (2.022) BS01 A1H7G 5.2.1.8 N/A Q13451 38818693
    459894 9eud:B (2.022) BS01 A1H7G 5.2.1.8 N/A Q13451 38818693
    459895 9eue:A (2.0) BS01 A1H68 5.2.1.8 N/A Q13451 38818693
    459896 9eue:B (2.0) BS01 A1H68 5.2.1.8 N/A Q13451 38818693
    459897 9eun:A (2.33) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459898 9eun:A (2.33) BS02 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459899 9euo:A (3.2) BS01 A1H8F N/A N/A Q7K4Y6 39010681
    459900 9euo:A (3.2) BS02 Y01 N/A N/A Q7K4Y6 39010681
    459901 9euo:A (3.2) BS03 CLR N/A N/A Q7K4Y6 39010681
    459902 9euo:A (3.2) BS05 CL N/A N/A Q7K4Y6 39010681
    459903 9eup:A (3.0) BS01 Y01 N/A N/A Q7K4Y6 39010681
    459904 9eup:A (3.0) BS02 CLR N/A N/A Q7K4Y6 39010681
    459905 9eup:A (3.0) BS05 CL N/A N/A Q7K4Y6 39010681
    459906 9eut:A (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    459907 9eut:B (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    459908 9euy:A (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    459909 9euy:B (2.95) BS01 LBV N/A N/A Q9HWR3 39216473
    459910 9ev3:A (1.219) BS01 FAD N/A N/A Q8NMG5 39080980
    459911 9ev3:A (1.219) BS02 TPP N/A N/A Q8NMG5 39080980
    459912 9ev4:A (1.474) BS01 FAD N/A N/A Q8NMG5 39080980
    459913 9ev5:A (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    459914 9ev5:A (1.863) BS03 FAD N/A N/A Q8NMG5 39080980
    459915 9ev5:A (1.863) BS04 TPP N/A N/A Q8NMG5 39080980
    459916 9ev5:B (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    459917 9ev5:B (1.863) BS02 TPP N/A N/A Q8NMG5 39080980
    459918 9ev5:B (1.863) BS04 FAD N/A N/A Q8NMG5 39080980
    459919 9ev5:C (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    459920 9ev5:C (1.863) BS03 FAD N/A N/A Q8NMG5 39080980
    459921 9ev5:C (1.863) BS04 TPP N/A N/A Q8NMG5 39080980
    459922 9ev5:D (1.863) BS01 TPP N/A N/A Q8NMG5 39080980
    459923 9ev5:D (1.863) BS02 TPP N/A N/A Q8NMG5 39080980
    459924 9ev5:D (1.863) BS04 FAD N/A N/A Q8NMG5 39080980
    459925 9ev6:A (1.891) BS01 FAD N/A N/A Q8NMG5 39080980
    459926 9ev6:A (1.891) BS02 TPP N/A N/A Q8NMG5 39080980
    459927 9ev6:A (1.891) BS04 TPP N/A N/A Q8NMG5 39080980
    459928 9ev6:B (1.891) BS01 TPP N/A N/A Q8NMG5 39080980
    459929 9ev6:B (1.891) BS02 FAD N/A N/A Q8NMG5 39080980
    459930 9ev6:B (1.891) BS03 TPP N/A N/A Q8NMG5 39080980
    459931 9ev6:C (1.891) BS01 FAD N/A N/A Q8NMG5 39080980
    459932 9ev6:C (1.891) BS02 TPP N/A N/A Q8NMG5 39080980
    459933 9ev6:C (1.891) BS04 TPP N/A N/A Q8NMG5 39080980
    459934 9ev6:D (1.891) BS01 TPP N/A N/A Q8NMG5 39080980
    459935 9ev6:D (1.891) BS02 FAD N/A N/A Q8NMG5 39080980
    459936 9ev6:D (1.891) BS03 TPP N/A N/A Q8NMG5 39080980
    459937 9evm:A (1.8) BS01 FRU N/A N/A Q89EJ6 39002715
    459938 9evq:A (1.75) BS01 ACO N/A N/A Q38AU6 N/A
    459939 9evq:B (1.75) BS01 ACO N/A N/A Q38AU6 N/A
    459940 9evv:A (2.44) BS02 FES N/A N/A B5ZZ34 39126499
    459941 9evv:B (2.44) BS02 FES N/A N/A B5ZZ34 39126499
    459942 9evv:C (2.44) BS02 FES N/A N/A B5ZZ34 39126499
    459943 9evv:D (2.44) BS02 FES N/A N/A B5ZZ34 39126499
    459944 9evv:D (2.44) BS03 2KT N/A N/A B5ZZ34 39126499
    459945 9evx:A (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    459946 9evx:A (1.71) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    459947 9evx:A (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    459948 9evx:A (1.71) BS05 OEX 1.10.3.9 GO:0005506 ... P0A444 38900892
    459949 9evx:A (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    459950 9evx:A (1.71) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    459951 9evx:A (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    459952 9evx:A (1.71) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    459953 9evx:A (1.71) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 38900892
    459954 9evx:B (1.71) BS01 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459955 9evx:B (1.71) BS02 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459956 9evx:B (1.71) BS03 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459957 9evx:B (1.71) BS04 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459958 9evx:B (1.71) BS05 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459959 9evx:B (1.71) BS06 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459960 9evx:B (1.71) BS07 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459961 9evx:B (1.71) BS08 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459962 9evx:B (1.71) BS09 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459963 9evx:B (1.71) BS10 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459964 9evx:B (1.71) BS11 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459965 9evx:B (1.71) BS12 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459966 9evx:B (1.71) BS13 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459967 9evx:B (1.71) BS14 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459968 9evx:B (1.71) BS15 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459969 9evx:B (1.71) BS16 CLA ? GO:0009523 ... Q8DIQ1 38900892
    459970 9evx:C (1.71) BS01 OEX ? GO:0005737 ... Q8DIF8 38900892
    459971 9evx:C (1.71) BS02 CLA ? GO:0005737 ... Q8DIF8 38900892
    459972 9evx:C (1.71) BS03 CLA ? GO:0005737 ... Q8DIF8 38900892
    459973 9evx:C (1.71) BS04 CLA ? GO:0005737 ... Q8DIF8 38900892
    459974 9evx:C (1.71) BS05 CLA ? GO:0005737 ... Q8DIF8 38900892
    459975 9evx:C (1.71) BS06 CLA ? GO:0005737 ... Q8DIF8 38900892
    459976 9evx:C (1.71) BS07 CLA ? GO:0005737 ... Q8DIF8 38900892
    459977 9evx:C (1.71) BS08 CLA ? GO:0005737 ... Q8DIF8 38900892
    459978 9evx:C (1.71) BS09 CLA ? GO:0005737 ... Q8DIF8 38900892
    459979 9evx:C (1.71) BS10 CLA ? GO:0005737 ... Q8DIF8 38900892
    459980 9evx:C (1.71) BS11 CLA ? GO:0005737 ... Q8DIF8 38900892
    459981 9evx:C (1.71) BS12 CLA ? GO:0005737 ... Q8DIF8 38900892
    459982 9evx:C (1.71) BS13 CLA ? GO:0005737 ... Q8DIF8 38900892
    459983 9evx:C (1.71) BS14 CLA ? GO:0005737 ... Q8DIF8 38900892
    459984 9evx:D (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459985 9evx:D (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459986 9evx:D (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459987 9evx:D (1.71) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459988 9evx:D (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459989 9evx:D (1.71) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459990 9evx:D (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459991 9evx:D (1.71) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    459992 9evx:E (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    459993 9evx:F (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    459994 9evx:H (1.71) BS01 CLA ? GO:0009523 ... Q8DJ43 38900892
    459995 9evx:H (1.71) BS02 CLA ? GO:0009523 ... Q8DJ43 38900892
    459996 9evx:H (1.71) BS03 CLA ? GO:0009523 ... Q8DJ43 38900892
    459997 9evx:H (1.71) BS04 CLA ? GO:0009523 ... Q8DJ43 38900892
    459998 9evx:I (1.71) BS01 CLA ? GO:0005737 ... Q8DJZ6 38900892
    459999 9evx:K (1.71) BS02 CLA ? GO:0005737 ... Q9F1K9 38900892
    460000 9evx:K (1.71) BS03 CLA ? GO:0005737 ... Q9F1K9 38900892
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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