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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    459401 9cmi:H (2.83) BS01 AV0 N/A N/A N/A N/A
    459402 9cmz:A (2.45) BS01 A1AZE N/A GO:0004674 ... Q8IDW1 N/A
    459403 9cmz:B (2.45) BS01 A1AZE N/A GO:0004674 ... Q8IDW1 N/A
    459404 9cmz:C (2.45) BS01 A1AZE N/A GO:0004674 ... Q8IDW1 N/A
    459405 9cp7:A (1.751) BS02 NAI N/A N/A Q46N53 39263660
    459406 9cp7:A (1.751) BS03 OCS N/A N/A Q46N53 39263660
    459407 9cp7:A (1.751) BS04 OCS N/A N/A Q46N53 39263660
    459408 9cp7:B (1.751) BS01 OCS N/A N/A Q46N53 39263660
    459409 9cp7:B (1.751) BS03 NAI N/A N/A Q46N53 39263660
    459410 9cp7:B (1.751) BS04 OCS N/A N/A Q46N53 39263660
    459411 9cp8:A (1.57) BS02 NAI N/A N/A Q46N53 39263660
    459412 9cp8:A (1.57) BS03 3SL N/A N/A Q46N53 39263660
    459413 9cp8:B (1.57) BS02 NAI N/A N/A Q46N53 39263660
    459414 9cp8:B (1.57) BS03 3SL N/A N/A Q46N53 39263660
    459415 9cp9:A (2.013) BS02 NAI N/A N/A Q46N53 39263660
    459416 9cp9:A (2.013) BS03 A1AZH N/A N/A Q46N53 39263660
    459417 9cp9:B (2.013) BS02 NAI N/A N/A Q46N53 39263660
    459418 9cp9:B (2.013) BS03 A1AZH N/A N/A Q46N53 39263660
    459419 9csg:A (1.914) BS01 A1AZR N/A N/A P02768 39172133
    459420 9csi:A (2.8) BS01 ANP N/A N/A A0A6F8TGG1 39172133
    459421 9csi:A (2.8) BS03 A1AZS N/A N/A A0A6F8TGG1 39172133
    459422 9ctq:A (2.41) BS02 ABU N/A N/A O76090 39277606
    459423 9ctq:B (2.41) BS02 ABU N/A N/A O76090 39277606
    459424 9ctq:C (2.41) BS02 ABU N/A N/A O76090 39277606
    459425 9ctq:D (2.41) BS02 ABU N/A N/A O76090 39277606
    459426 9ctq:E (2.41) BS02 ABU N/A N/A O76090 39277606
    459427 9ctr:A (2.42) BS01 ABU N/A N/A O76090 39277606
    459428 9ctr:A (2.42) BS03 ABU N/A N/A O76090 39277606
    459429 9ctr:B (2.42) BS02 ABU N/A N/A O76090 39277606
    459430 9ctr:B (2.42) BS03 ABU N/A N/A O76090 39277606
    459431 9ctr:C (2.42) BS01 ABU N/A N/A O76090 39277606
    459432 9ctr:D (2.42) BS02 ABU N/A N/A O76090 39277606
    459433 9ctr:E (2.42) BS02 ABU N/A N/A O76090 39277606
    459434 9cts:A (2.45) BS01 ABU N/A N/A O76090 39277606
    459435 9cts:A (2.45) BS03 ABU N/A N/A O76090 39277606
    459436 9cts:B (2.45) BS02 ABU N/A N/A O76090 39277606
    459437 9cts:B (2.45) BS03 ABU N/A N/A O76090 39277606
    459438 9cts:C (2.45) BS02 ABU N/A N/A O76090 39277606
    459439 9cts:D (2.45) BS01 ABU N/A N/A O76090 39277606
    459440 9cts:E (2.45) BS02 ABU N/A N/A O76090 39277606
    459441 9cts:E (2.45) BS03 ABU N/A N/A O76090 39277606
    459442 9ctx:A (1.55) BS01 017 N/A N/A O38893 N/A
    459443 9cu9:A (1.9) BS01 THP N/A N/A Q5HHM4 N/A
    459444 9cuo:A (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    459445 9cuo:B (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    459446 9cuo:C (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    459447 9cuo:D (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    459448 9cuo:E (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    459449 9cuo:F (1.6) BS02 A1A0J N/A N/A Q96SW2 39151120
    459450 9cuz:1 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459451 9cuz:2 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459452 9cuz:3 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459453 9cuz:4 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459454 9cuz:5 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459455 9cuz:6 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459456 9cuz:7 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459457 9cuz:8 (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459458 9cuz:A (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459459 9cuz:B (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459460 9cuz:C (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459461 9cuz:D (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459462 9cuz:E (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459463 9cuz:F (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459464 9cuz:G (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459465 9cuz:H (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459466 9cuz:I (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459467 9cuz:J (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459468 9cuz:K (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459469 9cuz:L (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459470 9cuz:M (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459471 9cuz:N (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459472 9cuz:O (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459473 9cuz:P (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459474 9cuz:Q (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459475 9cuz:R (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459476 9cuz:S (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459477 9cuz:T (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459478 9cuz:U (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459479 9cuz:V (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459480 9cuz:W (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459481 9cuz:X (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459482 9cuz:Y (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459483 9cuz:Z (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459484 9cuz:a (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459485 9cuz:b (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459486 9cuz:c (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459487 9cuz:d (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459488 9cuz:e (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459489 9cuz:f (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459490 9cuz:g (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459491 9cuz:h (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459492 9cuz:i (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459493 9cuz:j (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459494 9cuz:k (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459495 9cuz:l (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459496 9cuz:m (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459497 9cuz:n (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459498 9cuz:o (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459499 9cuz:p (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459500 9cuz:q (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459501 9cuz:r (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459502 9cuz:s (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459503 9cuz:t (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459504 9cuz:u (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459505 9cuz:v (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459506 9cuz:w (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459507 9cuz:x (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459508 9cuz:y (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459509 9cuz:z (2.16) BS01 SIA N/A N/A A0A097PIM0 39205232
    459510 9cwn:A (2.7) BS02 EDK N/A N/A P37231 N/A
    459511 9cys:A (1.75) BS01 MIE N/A N/A A0A0M7ENE2 N/A
    459512 9d2c:A (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459513 9d2c:A (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459514 9d2c:A (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459515 9d2c:B (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459516 9d2c:B (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459517 9d2c:B (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459518 9d2c:C (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459519 9d2c:C (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459520 9d2c:C (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459521 9d2c:D (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459522 9d2c:D (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459523 9d2c:D (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459524 9d2c:E (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459525 9d2c:E (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459526 9d2c:E (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459527 9d2c:F (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459528 9d2c:F (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459529 9d2c:F (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459530 9d2c:H (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459531 9d2c:H (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459532 9d2c:H (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459533 9d2c:I (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459534 9d2c:I (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459535 9d2c:I (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459536 9d2c:J (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459537 9d2c:J (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459538 9d2c:J (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459539 9d2c:K (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459540 9d2c:K (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459541 9d2c:K (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459542 9d2c:L (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459543 9d2c:L (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459544 9d2c:L (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    459545 9d2c:M (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    459546 9d2c:M (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    459547 9d3e:A (3.02) BS01 CLR N/A N/A N/A 39217154
    459548 9d3e:A (3.02) BS02 EBX N/A N/A N/A 39217154
    459549 9d3e:A (3.02) BS03 A1A1W N/A N/A N/A 39217154
    459550 9d3g:A (3.26) BS01 CLR N/A N/A N/A 39217154
    459551 9d3g:A (3.26) BS02 EBX N/A N/A N/A 39217154
    459552 9d3g:A (3.26) BS03 A1A2A N/A N/A N/A 39217154
    459553 9d6k:A (1.29) BS01 O N/A N/A Q7SID2 38677005
    459554 9d8a:A (1.65) BS01 GDP N/A N/A A0A367K070 N/A
    459555 9d8s:A (2.12) BS01 AMP N/A N/A A3FQ16 N/A
    459556 9d9k:A (2.63) BS01 A1A23 N/A N/A Q9HW02 N/A
    459557 9d9k:A (2.63) BS02 A1A23 N/A N/A Q9HW02 N/A
    459558 9em0:A (2.2) BS01 FMN N/A N/A Q9FEW9 39103552
    459559 9em0:A (2.2) BS02 FMN N/A N/A Q9FEW9 39103552
    459560 9em0:B (2.2) BS01 FMN N/A N/A Q9FEW9 39103552
    459561 9em0:B (2.2) BS02 FMN N/A N/A Q9FEW9 39103552
    459562 9em1:A (1.5) BS02 UK9 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    459563 9em2:A (1.54) BS01 FMN N/A N/A Q9FEW9 39103552
    459564 9em2:A (1.54) BS02 FMN N/A N/A Q9FEW9 39103552
    459565 9em2:B (1.54) BS01 FMN N/A N/A Q9FEW9 39103552
    459566 9em2:B (1.54) BS02 FMN N/A N/A Q9FEW9 39103552
    459567 9em3:A (2.27) BS01 FMN N/A N/A Q9FEW9 39103552
    459568 9em4:A (2.01) BS01 FMN N/A N/A Q9FEW9 39103552
    459569 9em4:A (2.01) BS02 FMN N/A N/A Q9FEW9 39103552
    459570 9em4:A (2.01) BS03 SO4 N/A N/A Q9FEW9 39103552
    459571 9em4:B (2.01) BS01 FMN N/A N/A Q9FEW9 39103552
    459572 9em4:B (2.01) BS02 FMN N/A N/A Q9FEW9 39103552
    459573 9em5:A (1.6) BS01 FMN N/A N/A Q9FEW9 39103552
    459574 9em6:A (1.72) BS01 FMN N/A N/A Q9FEW9 39103552
    459575 9em6:A (1.72) BS02 FMN N/A N/A Q9FEW9 39103552
    459576 9em6:B (1.72) BS01 FMN N/A N/A Q9FEW9 39103552
    459577 9em6:B (1.72) BS02 FMN N/A N/A Q9FEW9 39103552
    459578 9em9:A (3.76) BS01 GNP N/A N/A P73765 39207903
    459579 9em9:B (3.76) BS01 GNP N/A N/A P73765 39207903
    459580 9ema:A (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459581 9ema:A (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459582 9ema:A (2.4) BS03 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459583 9ema:B (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459584 9ema:B (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459585 9ema:C (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459586 9ema:C (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459587 9ema:D (2.4) BS01 A1H5V 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    459588 9ema:D (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    459589 9ema:E (2.4) BS01 A1H5V 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    459590 9ema:E (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    459591 9ema:F (2.4) BS01 A1H5V 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    459592 9ema:F (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    459593 9emb:A (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    459594 9emb:A (2.98) BS02 PGW ? GO:0000166 ... P03819 N/A
    459595 9emb:B (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    459596 9emc:A (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459597 9emc:B (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459598 9emc:C (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    459599 9emc:D (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    459600 9emc:D (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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