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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    457601 8yvp:D (2.5) BS01 A1L0D N/A N/A O55234 38906067
    457602 8yvp:D (2.5) BS02 A1L0D N/A N/A O55234 38906067
    457603 8yvp:F (2.5) BS01 A1L0D N/A N/A Q60692 38906067
    457604 8yvp:M (2.5) BS01 A1L0D N/A GO:0000502 ... Q9Z2U1 38906067
    457605 8yvp:S (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    457606 8yvp:X (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    457607 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    457608 8yxa:A (2.5) BS01 X56 N/A N/A P02768 39083648
    457609 8yxa:B (2.5) BS01 X56 N/A N/A P02768 39083648
    457610 8yxb:A (2.2) BS01 9F2 N/A N/A P02768 39083648
    457611 8yxb:B (2.2) BS01 9F2 N/A N/A P02768 39083648
    457612 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    457613 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    457614 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    457615 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    457616 8yyq:A (1.95) BS01 A1L0G ? GO:0000166 ... A0A0F7R6G7 38805007
    457617 8yyr:A (1.8) BS01 A1L0H ? GO:0000166 ... A0A0F7R6G7 38805007
    457618 8z0f:A (3.27) BS01 ATP N/A N/A P28288 N/A
    457619 8z0f:A (3.27) BS02 ATP N/A N/A P28288 N/A
    457620 8z0f:B (3.27) BS01 ATP N/A N/A P28288 N/A
    457621 8z0f:B (3.27) BS02 ATP N/A N/A P28288 N/A
    457622 8z10:A (2.35) BS01 PRO ? N/A P35222 N/A
    457623 8z1l:A (3.4) BS01 A1LX4 N/A GO:0003779 ... P23975 39048818
    457624 8z38:A (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    457625 8z38:B (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    457626 8z3s:A (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    457627 8z3s:A (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    457628 8z3s:B (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    457629 8z3s:C (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    457630 8z3s:D (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    457631 8z3s:D (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    457632 8z4r:A (1.81) BS01 A1D7Y N/A N/A N/A 39227380
    457633 8z4s:A (1.93) BS01 A1D7Z N/A N/A N/A 39227380
    457634 8z5l:B (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    457635 8z5l:C (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    457636 8z8o:A (1.71) BS02 SAH N/A N/A A0A077EWA5 N/A
    457637 8z8o:B (1.71) BS02 SAH N/A N/A A0A077EWA5 N/A
    457638 8z8o:C (1.71) BS02 SAH N/A N/A A0A077EWA5 N/A
    457639 8z8o:D (1.71) BS02 SAH N/A N/A A0A077EWA5 N/A
    457640 8z8p:A (1.68) BS02 SAH N/A N/A A0A077EWA5 N/A
    457641 8z8p:B (1.68) BS02 SAH N/A N/A A0A077EWA5 N/A
    457642 8z8p:C (1.68) BS02 SAH N/A N/A A0A077EWA5 N/A
    457643 8z8p:D (1.68) BS02 SAH N/A N/A A0A077EWA5 N/A
    457644 8z8r:A (1.79) BS02 SAH N/A N/A A0A077EWA5 N/A
    457645 8z8r:B (1.79) BS02 SAH N/A N/A A0A077EWA5 N/A
    457646 8z8r:C (1.79) BS02 SAH N/A N/A A0A077EWA5 N/A
    457647 8z8r:D (1.79) BS02 SAH N/A N/A A0A077EWA5 N/A
    457648 8z8s:A (1.94) BS02 SAH N/A N/A A0A077EWA5 N/A
    457649 8z8s:B (1.94) BS02 SAH N/A N/A A0A077EWA5 N/A
    457650 8z8x:B (3.06) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    457651 8z90:B (2.87) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    457652 8z97:B (2.65) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    457653 8z97:C (2.65) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    457654 8z98:A (2.52) BS02 V9G ? GO:0042025 ... P27194 38816392
    457655 8z9a:D (3.0) BS01 SOU N/A GO:0004984 ... A0A1S6J146 38870272
    457656 8z9h:B (2.7) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    457657 8z9h:C (2.7) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    457658 8z9h:H (2.7) BS02 V9G ? GO:0042025 ... P27194 38816392
    457659 8z9x:A (2.96) BS01 A1L1A N/A N/A P28288 N/A
    457660 8z9x:B (2.96) BS01 A1L1A N/A N/A P28288 N/A
    457661 8zam:A (2.5) BS01 L9Q N/A N/A Q8RUT8 39181878
    457662 8zam:B (2.5) BS01 L9Q N/A N/A Q8RUT8 39181878
    457663 8zan:A (2.4) BS01 RET N/A N/A Q8RUT8 39181878
    457664 8zan:B (2.4) BS01 RET N/A N/A Q8RUT8 39181878
    457665 8zao:A (2.6) BS01 RET N/A N/A N/A 39181878
    457666 8zao:B (2.6) BS01 RET N/A N/A N/A 39181878
    457667 8zao:C (2.6) BS01 RET N/A N/A N/A 39181878
    457668 8zap:A (2.6) BS01 RET N/A N/A N/A 39181878
    457669 8zap:B (2.6) BS01 RET N/A N/A N/A 39181878
    457670 8zap:C (2.6) BS01 RET N/A N/A N/A 39181878
    457671 8zaq:A (2.6) BS01 RET N/A N/A N/A 39181878
    457672 8zaq:B (2.6) BS01 RET N/A N/A N/A 39181878
    457673 8zaq:C (2.6) BS01 RET N/A N/A N/A 39181878
    457674 8zav:A (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    457675 8zav:B (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    457676 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    457677 8zb8:A (2.94) BS03 A1D8I N/A GO:0000226 ... Q2XVP4 N/A
    457678 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    457679 8zb8:B (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    457680 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    457681 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    457682 8zb8:D (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    457683 8zb8:F (2.94) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 N/A
    457684 8zc9:A (3.14) BS01 NAD N/A N/A D4G637 39039073
    457685 8zc9:B (3.14) BS01 NAD N/A N/A D4G637 39039073
    457686 8zc9:D (3.14) BS01 NAD N/A N/A D4G637 39039073
    457687 8zc9:E (3.14) BS01 NAD N/A N/A D4G637 39039073
    457688 8zck:A (2.0) BS01 GAL ? N/A P0DOX5 N/A
    457689 8zck:B (2.0) BS01 BMA ? N/A P0DOX5 N/A
    457690 8zcl:A (2.6) BS01 GAL ? N/A P0DOX5 N/A
    457691 8zcl:A (2.6) BS02 FUL ? N/A P0DOX5 N/A
    457692 8zcm:A (2.64) BS01 GAL ? N/A P0DOX5 N/A
    457693 8zdv:A (2.8) BS01 SIA N/A N/A A0A8E4ZAK5 N/A
    457694 8zdv:B (2.8) BS01 SIA N/A N/A A0A8E4ZAK5 N/A
    457695 8zdv:C (2.8) BS01 SIA N/A N/A A0A8E4ZAK5 N/A
    457696 8zdw:A (3.45) BS01 SIA N/A N/A Q6DQ33 N/A
    457697 8zdw:C (3.45) BS01 SIA N/A N/A Q6DQ33 N/A
    457698 8zdw:H (3.45) BS01 SIA N/A N/A Q6DQ33 N/A
    457699 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    457700 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    457701 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    457702 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    457703 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    457704 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    457705 8zee:B (2.9) BS01 CLA N/A GO:0009507 ... P37255 38890314
    457706 8zee:B (2.9) BS02 CLA N/A GO:0009507 ... P37255 38890314
    457707 8zee:B (2.9) BS03 CLA N/A GO:0009507 ... P37255 38890314
    457708 8zee:B (2.9) BS04 CLA N/A GO:0009507 ... P37255 38890314
    457709 8zee:B (2.9) BS05 CLA N/A GO:0009507 ... P37255 38890314
    457710 8zee:B (2.9) BS06 CLA N/A GO:0009507 ... P37255 38890314
    457711 8zee:B (2.9) BS07 CLA N/A GO:0009507 ... P37255 38890314
    457712 8zee:B (2.9) BS08 CLA N/A GO:0009507 ... P37255 38890314
    457713 8zee:B (2.9) BS09 CLA N/A GO:0009507 ... P37255 38890314
    457714 8zee:B (2.9) BS10 CLA N/A GO:0009507 ... P37255 38890314
    457715 8zee:B (2.9) BS11 CLA N/A GO:0009507 ... P37255 38890314
    457716 8zee:B (2.9) BS12 CLA N/A GO:0009507 ... P37255 38890314
    457717 8zee:B (2.9) BS13 CLA N/A GO:0009507 ... P37255 38890314
    457718 8zee:B (2.9) BS14 CLA N/A GO:0009507 ... P37255 38890314
    457719 8zee:B (2.9) BS15 CLA N/A GO:0009507 ... P37255 38890314
    457720 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    457721 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    457722 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    457723 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    457724 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    457725 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    457726 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    457727 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    457728 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    457729 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    457730 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    457731 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    457732 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    457733 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    457734 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    457735 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    457736 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    457737 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    457738 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    457739 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    457740 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    457741 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    457742 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    457743 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    457744 8zee:H (2.9) BS01 CLA N/A GO:0009507 ... P22666 38890314
    457745 8zee:H (2.9) BS02 CLA N/A GO:0009507 ... P22666 38890314
    457746 8zee:H (2.9) BS03 CLA N/A GO:0009507 ... P22666 38890314
    457747 8zee:I (2.9) BS01 CLA N/A GO:0005737 ... P59763 38890314
    457748 8zee:X (2.9) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    457749 8zf1:A (2.6) BS01 U1O N/A N/A A2RI36 38976645
    457750 8zfk:A (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457751 8zfk:A (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457752 8zfk:B (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457753 8zfk:B (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457754 8zfk:C (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457755 8zfk:C (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457756 8zfk:D (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457757 8zfk:D (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457758 8zfk:E (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457759 8zfk:E (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    457760 8zfn:A (2.54) BS01 GW9 N/A N/A P37231 N/A
    457761 8zfn:A (2.54) BS02 PLB N/A N/A P37231 N/A
    457762 8zfn:B (2.54) BS01 GW9 N/A N/A P37231 N/A
    457763 8zfn:B (2.54) BS02 PLB N/A N/A P37231 N/A
    457764 8zfo:A (3.15) BS01 NZA N/A N/A P37231 N/A
    457765 8zfo:B (3.15) BS01 GW9 N/A N/A P37231 N/A
    457766 8zfo:B (3.15) BS02 NZA N/A N/A P37231 N/A
    457767 8zfp:A (2.48) BS01 GW9 N/A N/A P37231 N/A
    457768 8zfp:A (2.48) BS02 241 N/A N/A P37231 N/A
    457769 8zfp:B (2.48) BS01 GW9 N/A N/A P37231 N/A
    457770 8zfp:B (2.48) BS02 241 N/A N/A P37231 N/A
    457771 8zfq:A (2.49) BS01 EEY N/A N/A P37231 N/A
    457772 8zfq:A (2.49) BS02 PLB N/A N/A P37231 N/A
    457773 8zfq:B (2.49) BS01 EEY N/A N/A P37231 N/A
    457774 8zfq:B (2.49) BS02 PLB N/A N/A P37231 N/A
    457775 8zfr:B (2.73) BS01 EEY N/A N/A P37231 N/A
    457776 8zfr:B (2.73) BS02 NZA N/A N/A P37231 N/A
    457777 8zfs:A (2.56) BS01 EEY N/A N/A P37231 N/A
    457778 8zfs:A (2.56) BS02 241 N/A N/A P37231 N/A
    457779 8zfs:B (2.56) BS01 EEY N/A N/A P37231 N/A
    457780 8zfs:B (2.56) BS02 241 N/A N/A P37231 N/A
    457781 8zft:A (3.2) BS01 EEY N/A N/A P37231 N/A
    457782 8zft:A (3.2) BS02 3JX N/A N/A P37231 N/A
    457783 8zft:B (3.2) BS01 EEY N/A N/A P37231 N/A
    457784 8zft:B (3.2) BS02 3JX N/A N/A P37231 N/A
    457785 8zfw:A (2.18) BS02 SAH N/A N/A A0A077EWA5 N/A
    457786 8zfw:B (2.18) BS01 A1LU2 N/A N/A A0A077EWA5 N/A
    457787 8zfw:B (2.18) BS03 SAH N/A N/A A0A077EWA5 N/A
    457788 8zgs:B (3.04) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    457789 8zgt:B (2.96) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    457790 8zh4:A (1.82) BS01 A1L1V N/A N/A P12497 38942126
    457791 8zha:A (1.95) BS01 A1L1W N/A N/A P12497 38942126
    457792 8zi8:A (2.65) BS01 GTQ N/A N/A B7WRJ7 N/A
    457793 8zi8:D (2.65) BS01 GTQ N/A N/A B7WRJ7 N/A
    457794 8zj0:D (2.9) BS01 3HB N/A N/A B7WRJ7 N/A
    457795 8zj2:D (4.66) BS02 GTP N/A GO:0003924 ... P84095 38857861
    457796 8zj7:A (2.65) BS02 NAD N/A N/A B7WRJ7 N/A
    457797 8zj7:B (2.65) BS01 NAD N/A N/A B7WRJ7 N/A
    457798 8zjv:A (1.8) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    457799 8zkd:A (2.05) BS01 ANP N/A N/A Q04912 N/A
    457800 8zle:A (3.35) BS01 CLR N/A N/A N/A 39033175
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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