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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    456801 8xr6:7 (2.53) BS02 CLA N/A N/A N/A N/A
    456802 8xr6:7 (2.53) BS03 CLA N/A N/A N/A N/A
    456803 8xr6:7 (2.53) BS04 CLA N/A N/A N/A N/A
    456804 8xr6:7 (2.53) BS05 CLA N/A N/A N/A N/A
    456805 8xr6:7 (2.53) BS06 CLA N/A N/A N/A N/A
    456806 8xr6:7 (2.53) BS07 CLA N/A N/A N/A N/A
    456807 8xr6:7 (2.53) BS08 CLA N/A N/A N/A N/A
    456808 8xr6:7 (2.53) BS09 CLA N/A N/A N/A N/A
    456809 8xr6:7 (2.53) BS10 KC2 N/A N/A N/A N/A
    456810 8xr6:7 (2.53) BS11 KC2 N/A N/A N/A N/A
    456811 8xr6:7 (2.53) BS12 8CT N/A N/A N/A N/A
    456812 8xr6:7 (2.53) BS13 II0 N/A N/A N/A N/A
    456813 8xr6:7 (2.53) BS14 II0 N/A N/A N/A N/A
    456814 8xr6:7 (2.53) BS15 II0 N/A N/A N/A N/A
    456815 8xr6:7 (2.53) BS16 II0 N/A N/A N/A N/A
    456816 8xr6:7 (2.53) BS17 CLA N/A N/A N/A N/A
    456817 8xr6:8 (2.53) BS01 CLA N/A N/A N/A N/A
    456818 8xr6:8 (2.53) BS02 CLA N/A N/A N/A N/A
    456819 8xr6:8 (2.53) BS03 8CT N/A N/A N/A N/A
    456820 8xr6:8 (2.53) BS04 II0 N/A N/A N/A N/A
    456821 8xr6:8 (2.53) BS05 CLA N/A N/A N/A N/A
    456822 8xr6:8 (2.53) BS06 CLA N/A N/A N/A N/A
    456823 8xr6:8 (2.53) BS07 CLA N/A N/A N/A N/A
    456824 8xr6:8 (2.53) BS08 CLA N/A N/A N/A N/A
    456825 8xr6:8 (2.53) BS09 CLA N/A N/A N/A N/A
    456826 8xr6:8 (2.53) BS10 CLA N/A N/A N/A N/A
    456827 8xr6:8 (2.53) BS11 CLA N/A N/A N/A N/A
    456828 8xr6:8 (2.53) BS12 CLA N/A N/A N/A N/A
    456829 8xr6:8 (2.53) BS13 KC2 N/A N/A N/A N/A
    456830 8xr6:8 (2.53) BS14 CLA N/A N/A N/A N/A
    456831 8xr6:8 (2.53) BS15 II0 N/A N/A N/A N/A
    456832 8xr6:8 (2.53) BS16 II0 N/A N/A N/A N/A
    456833 8xr6:8 (2.53) BS17 II0 N/A N/A N/A N/A
    456834 8xr6:8 (2.53) BS18 IHT N/A N/A N/A N/A
    456835 8xr6:8 (2.53) BS19 II0 N/A N/A N/A N/A
    456836 8xr6:8 (2.53) BS20 CLA N/A N/A N/A N/A
    456837 8xr6:8 (2.53) BS21 CLA N/A N/A N/A N/A
    456838 8xr6:8 (2.53) BS22 II0 N/A N/A N/A N/A
    456839 8xr6:8 (2.53) BS23 CLA N/A N/A N/A N/A
    456840 8xr6:8 (2.53) BS24 CLA N/A N/A N/A N/A
    456841 8xr6:8 (2.53) BS25 CLA N/A N/A N/A N/A
    456842 8xr6:9 (2.53) BS01 CLA N/A N/A N/A N/A
    456843 8xr6:9 (2.53) BS02 IHT N/A N/A N/A N/A
    456844 8xr6:9 (2.53) BS03 II0 N/A N/A N/A N/A
    456845 8xr6:9 (2.53) BS04 CLA N/A N/A N/A N/A
    456846 8xr6:9 (2.53) BS05 CLA N/A N/A N/A N/A
    456847 8xr6:9 (2.53) BS06 CLA N/A N/A N/A N/A
    456848 8xr6:9 (2.53) BS07 CLA N/A N/A N/A N/A
    456849 8xr6:9 (2.53) BS08 CLA N/A N/A N/A N/A
    456850 8xr6:9 (2.53) BS09 CLA N/A N/A N/A N/A
    456851 8xr6:9 (2.53) BS10 CLA N/A N/A N/A N/A
    456852 8xr6:9 (2.53) BS11 CLA N/A N/A N/A N/A
    456853 8xr6:9 (2.53) BS12 KC2 N/A N/A N/A N/A
    456854 8xr6:9 (2.53) BS13 CLA N/A N/A N/A N/A
    456855 8xr6:9 (2.53) BS14 CLA N/A N/A N/A N/A
    456856 8xr6:9 (2.53) BS15 CLA N/A N/A N/A N/A
    456857 8xr6:9 (2.53) BS16 CLA N/A N/A N/A N/A
    456858 8xr6:9 (2.53) BS17 II0 N/A N/A N/A N/A
    456859 8xr6:9 (2.53) BS18 II0 N/A N/A N/A N/A
    456860 8xr6:9 (2.53) BS19 II0 N/A N/A N/A N/A
    456861 8xr6:9 (2.53) BS20 II0 N/A N/A N/A N/A
    456862 8xr6:9 (2.53) BS21 IHT N/A N/A N/A N/A
    456863 8xr6:A (2.53) BS02 OEX N/A GO:0005506 ... A0A222AI41 N/A
    456864 8xr6:A (2.53) BS04 BCT N/A GO:0005506 ... A0A222AI41 N/A
    456865 8xr6:A (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456866 8xr6:A (2.53) BS06 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456867 8xr6:A (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    456868 8xr6:A (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456869 8xr6:A (2.53) BS09 8CT N/A GO:0005506 ... A0A222AI41 N/A
    456870 8xr6:A (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456871 8xr6:A (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456872 8xr6:A (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    456873 8xr6:B (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456874 8xr6:B (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456875 8xr6:B (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456876 8xr6:B (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456877 8xr6:B (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456878 8xr6:B (2.53) BS06 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456879 8xr6:B (2.53) BS07 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456880 8xr6:B (2.53) BS08 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456881 8xr6:B (2.53) BS09 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456882 8xr6:B (2.53) BS10 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456883 8xr6:B (2.53) BS11 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456884 8xr6:B (2.53) BS12 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456885 8xr6:B (2.53) BS13 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456886 8xr6:B (2.53) BS14 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456887 8xr6:B (2.53) BS15 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456888 8xr6:B (2.53) BS16 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456889 8xr6:B (2.53) BS17 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    456890 8xr6:B (2.53) BS18 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    456891 8xr6:B (2.53) BS19 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    456892 8xr6:C (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 N/A
    456893 8xr6:C (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456894 8xr6:C (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456895 8xr6:C (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456896 8xr6:C (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456897 8xr6:C (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456898 8xr6:C (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456899 8xr6:C (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456900 8xr6:C (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456901 8xr6:C (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456902 8xr6:C (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456903 8xr6:C (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456904 8xr6:C (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456905 8xr6:C (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456906 8xr6:C (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 N/A
    456907 8xr6:C (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 N/A
    456908 8xr6:C (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 N/A
    456909 8xr6:D (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 N/A
    456910 8xr6:D (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456911 8xr6:D (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456912 8xr6:D (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    456913 8xr6:D (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456914 8xr6:D (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456915 8xr6:D (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    456916 8xr6:D (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456917 8xr6:D (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456918 8xr6:D (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    456919 8xr6:E (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    456920 8xr6:H (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    456921 8xr6:H (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    456922 8xr6:H (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    456923 8xr6:H (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    456924 8xr6:H (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    456925 8xr6:H (2.53) BS06 8CT N/A GO:0009523 ... A0A222AIE4 N/A
    456926 8xr6:I (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 N/A
    456927 8xr6:I (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 N/A
    456928 8xr6:K (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 N/A
    456929 8xr6:K (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    456930 8xr6:K (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    456931 8xr6:N (2.53) BS01 CLA N/A N/A N/A N/A
    456932 8xr6:N (2.53) BS02 CLA N/A N/A N/A N/A
    456933 8xr6:N (2.53) BS03 CLA N/A N/A N/A N/A
    456934 8xr6:N (2.53) BS04 CLA N/A N/A N/A N/A
    456935 8xr6:N (2.53) BS05 CLA N/A N/A N/A N/A
    456936 8xr6:N (2.53) BS06 CLA N/A N/A N/A N/A
    456937 8xr6:N (2.53) BS07 CLA N/A N/A N/A N/A
    456938 8xr6:V (2.53) BS01 HEM N/A N/A A0A222AI35 N/A
    456939 8xr6:X (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    456940 8xr6:Y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    456941 8xr6:Z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    456942 8xr6:a (2.53) BS02 OEX N/A GO:0005506 ... A0A222AI41 N/A
    456943 8xr6:a (2.53) BS04 BCT N/A GO:0005506 ... A0A222AI41 N/A
    456944 8xr6:a (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456945 8xr6:a (2.53) BS06 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456946 8xr6:a (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    456947 8xr6:a (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456948 8xr6:a (2.53) BS09 8CT N/A GO:0005506 ... A0A222AI41 N/A
    456949 8xr6:a (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456950 8xr6:a (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI41 N/A
    456951 8xr6:a (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    456952 8xr6:b (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456953 8xr6:b (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456954 8xr6:b (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456955 8xr6:b (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456956 8xr6:b (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456957 8xr6:b (2.53) BS06 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456958 8xr6:b (2.53) BS07 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456959 8xr6:b (2.53) BS08 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456960 8xr6:b (2.53) BS09 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456961 8xr6:b (2.53) BS10 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456962 8xr6:b (2.53) BS11 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456963 8xr6:b (2.53) BS12 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456964 8xr6:b (2.53) BS13 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456965 8xr6:b (2.53) BS14 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456966 8xr6:b (2.53) BS15 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456967 8xr6:b (2.53) BS16 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    456968 8xr6:b (2.53) BS17 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    456969 8xr6:b (2.53) BS18 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    456970 8xr6:b (2.53) BS19 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    456971 8xr6:c (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 N/A
    456972 8xr6:c (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456973 8xr6:c (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456974 8xr6:c (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456975 8xr6:c (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456976 8xr6:c (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456977 8xr6:c (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456978 8xr6:c (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456979 8xr6:c (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456980 8xr6:c (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456981 8xr6:c (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456982 8xr6:c (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456983 8xr6:c (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456984 8xr6:c (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 N/A
    456985 8xr6:c (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 N/A
    456986 8xr6:c (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 N/A
    456987 8xr6:c (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 N/A
    456988 8xr6:d (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 N/A
    456989 8xr6:d (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456990 8xr6:d (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456991 8xr6:d (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    456992 8xr6:d (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456993 8xr6:d (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456994 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    456995 8xr6:d (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456996 8xr6:d (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    456997 8xr6:d (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    456998 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    456999 8xr6:g (2.53) BS01 CLA N/A N/A N/A N/A
    457000 8xr6:g (2.53) BS02 II0 N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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