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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    456401 8xlp:R (2.57) BS11 CLA N/A N/A N/A N/A
    456402 8xlp:R (2.57) BS12 CLA N/A N/A N/A N/A
    456403 8xlp:R (2.57) BS13 KC2 N/A N/A N/A N/A
    456404 8xlp:R (2.57) BS14 CLA N/A N/A N/A N/A
    456405 8xlp:R (2.57) BS15 CLA N/A N/A N/A N/A
    456406 8xlp:R (2.57) BS16 II0 N/A N/A N/A N/A
    456407 8xlp:R (2.57) BS17 II0 N/A N/A N/A N/A
    456408 8xlp:R (2.57) BS18 II0 N/A N/A N/A N/A
    456409 8xlp:R (2.57) BS19 II0 N/A N/A N/A N/A
    456410 8xlp:R (2.57) BS20 IHT N/A N/A N/A N/A
    456411 8xlp:R (2.57) BS21 CLA N/A N/A N/A N/A
    456412 8xlp:R (2.57) BS22 II0 N/A N/A N/A N/A
    456413 8xlp:S (2.57) BS01 CLA N/A N/A N/A N/A
    456414 8xlp:S (2.57) BS02 CLA N/A N/A N/A N/A
    456415 8xlp:S (2.57) BS03 CLA N/A N/A N/A N/A
    456416 8xlp:S (2.57) BS04 CLA N/A N/A N/A N/A
    456417 8xlp:S (2.57) BS05 KC2 N/A N/A N/A N/A
    456418 8xlp:S (2.57) BS06 CLA N/A N/A N/A N/A
    456419 8xlp:S (2.57) BS07 CLA N/A N/A N/A N/A
    456420 8xlp:S (2.57) BS08 CLA N/A N/A N/A N/A
    456421 8xlp:S (2.57) BS09 KC2 N/A N/A N/A N/A
    456422 8xlp:S (2.57) BS10 CLA N/A N/A N/A N/A
    456423 8xlp:S (2.57) BS11 CLA N/A N/A N/A N/A
    456424 8xlp:S (2.57) BS12 II0 N/A N/A N/A N/A
    456425 8xlp:S (2.57) BS13 II0 N/A N/A N/A N/A
    456426 8xlp:S (2.57) BS14 II0 N/A N/A N/A N/A
    456427 8xlp:S (2.57) BS15 II0 N/A N/A N/A N/A
    456428 8xlp:S (2.57) BS16 WVN N/A N/A N/A N/A
    456429 8xlp:W (2.57) BS01 CLA N/A N/A N/A N/A
    456430 8xlp:X (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    456431 8xlp:Y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    456432 8xlp:Z (2.57) BS01 KC2 N/A N/A A6MVZ2 N/A
    456433 8xlp:a (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    456434 8xlp:a (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    456435 8xlp:a (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    456436 8xlp:a (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    456437 8xlp:a (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    456438 8xlp:a (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    456439 8xlp:a (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    456440 8xlp:a (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    456441 8xlp:a (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    456442 8xlp:a (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    456443 8xlp:b (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    456444 8xlp:b (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    456445 8xlp:b (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    456446 8xlp:b (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    456447 8xlp:b (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    456448 8xlp:b (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    456449 8xlp:b (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    456450 8xlp:b (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    456451 8xlp:b (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    456452 8xlp:b (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    456453 8xlp:b (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    456454 8xlp:b (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    456455 8xlp:b (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    456456 8xlp:b (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    456457 8xlp:b (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    456458 8xlp:b (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    456459 8xlp:b (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    456460 8xlp:b (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    456461 8xlp:b (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    456462 8xlp:c (2.57) BS01 CLA N/A N/A A6MVR2 N/A
    456463 8xlp:c (2.57) BS02 CLA N/A N/A A6MVR2 N/A
    456464 8xlp:c (2.57) BS03 CLA N/A N/A A6MVR2 N/A
    456465 8xlp:c (2.57) BS04 CLA N/A N/A A6MVR2 N/A
    456466 8xlp:c (2.57) BS05 CLA N/A N/A A6MVR2 N/A
    456467 8xlp:c (2.57) BS06 CLA N/A N/A A6MVR2 N/A
    456468 8xlp:c (2.57) BS07 CLA N/A N/A A6MVR2 N/A
    456469 8xlp:c (2.57) BS08 CLA N/A N/A A6MVR2 N/A
    456470 8xlp:c (2.57) BS09 CLA N/A N/A A6MVR2 N/A
    456471 8xlp:c (2.57) BS10 CLA N/A N/A A6MVR2 N/A
    456472 8xlp:c (2.57) BS11 CLA N/A N/A A6MVR2 N/A
    456473 8xlp:c (2.57) BS12 CLA N/A N/A A6MVR2 N/A
    456474 8xlp:c (2.57) BS13 CLA N/A N/A A6MVR2 N/A
    456475 8xlp:c (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    456476 8xlp:c (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    456477 8xlp:c (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    456478 8xlp:d (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    456479 8xlp:d (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    456480 8xlp:d (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    456481 8xlp:d (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    456482 8xlp:d (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    456483 8xlp:d (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    456484 8xlp:d (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    456485 8xlp:d (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    456486 8xlp:d (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    456487 8xlp:e (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    456488 8xlp:f (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    456489 8xlp:f (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    456490 8xlp:g (2.57) BS01 CLA N/A N/A N/A N/A
    456491 8xlp:g (2.57) BS02 CLA N/A N/A N/A N/A
    456492 8xlp:g (2.57) BS03 CLA N/A N/A N/A N/A
    456493 8xlp:g (2.57) BS04 CLA N/A N/A N/A N/A
    456494 8xlp:g (2.57) BS05 CLA N/A N/A N/A N/A
    456495 8xlp:g (2.57) BS06 CLA N/A N/A N/A N/A
    456496 8xlp:g (2.57) BS07 CLA N/A N/A N/A N/A
    456497 8xlp:g (2.57) BS08 CLA N/A N/A N/A N/A
    456498 8xlp:h (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    456499 8xlp:h (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    456500 8xlp:h (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    456501 8xlp:h (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    456502 8xlp:h (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    456503 8xlp:i (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    456504 8xlp:i (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    456505 8xlp:k (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    456506 8xlp:k (2.57) BS02 WVN N/A GO:0005737 ... A6MVZ3 N/A
    456507 8xlp:k (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    456508 8xlp:m (2.57) BS01 WVN N/A N/A N/A N/A
    456509 8xlp:x (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    456510 8xlp:y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    456511 8xlp:z (2.57) BS01 WVN N/A N/A A6MVZ2 N/A
    456512 8xlp:z (2.57) BS02 KC2 N/A N/A A6MVZ2 N/A
    456513 8xlq:A (1.95) BS01 A1LVQ 2.7.10.1 GO:0004672 ... P22455 38432058
    456514 8xm7:D (4.91) BS02 GTP N/A GO:0003924 ... P84095 38857861
    456515 8xmb:B (3.4) BS05 GTP N/A GO:0000418 ... Q9LK40 N/A
    456516 8xmh:A (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456517 8xmh:B (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456518 8xmh:C (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456519 8xmh:D (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456520 8xmh:E (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456521 8xmh:F (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456522 8xmh:G (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456523 8xmh:H (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    456524 8xmi:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456525 8xmi:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456526 8xmi:C (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456527 8xmi:D (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456528 8xmi:E (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456529 8xmi:F (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456530 8xmi:G (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456531 8xmi:H (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    456532 8xmm:A (2.89) BS01 CLR ? GO:0001518 ... Q15858 38381792
    456533 8xmm:A (2.89) BS02 LPE ? GO:0001518 ... Q15858 38381792
    456534 8xmm:A (2.89) BS03 1PW ? GO:0001518 ... Q15858 38381792
    456535 8xmm:A (2.89) BS04 LPE ? GO:0001518 ... Q15858 38381792
    456536 8xmm:A (2.89) BS05 LPE ? GO:0001518 ... Q15858 38381792
    456537 8xmm:A (2.89) BS06 LPE ? GO:0001518 ... Q15858 38381792
    456538 8xmm:A (2.89) BS07 LPE ? GO:0001518 ... Q15858 38381792
    456539 8xmm:A (2.89) BS08 LPE ? GO:0001518 ... Q15858 38381792
    456540 8xmm:A (2.89) BS09 P5S ? GO:0001518 ... Q15858 38381792
    456541 8xmn:A (3.37) BS01 LPE ? GO:0001518 ... Q15858 38381792
    456542 8xmn:A (3.37) BS02 LPE ? GO:0001518 ... Q15858 38381792
    456543 8xmn:A (3.37) BS03 LPE ? GO:0001518 ... Q15858 38381792
    456544 8xmo:A (3.39) BS01 LPE ? GO:0001518 ... Q15858 38381792
    456545 8xmo:A (3.39) BS02 LPE ? GO:0001518 ... Q15858 38381792
    456546 8xmo:A (3.39) BS03 LPE ? GO:0001518 ... Q15858 38381792
    456547 8xn6:A (2.4) BS01 ANP 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    456548 8xn6:B (2.4) BS01 ANP 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    456549 8xn7:A (2.65) BS01 A1LVT 2.7.11.1 GO:0004672 ... Q92918 38479166
    456550 8xn7:B (2.65) BS01 A1LVT 2.7.11.1 GO:0004672 ... Q92918 38479166
    456551 8xn8:A (1.95) BS01 ADP 2.7.10.2 GO:0004672 ... P05480 N/A
    456552 8xo9:A (3.2) BS01 E5E ? GO:0022857 ... Q05940 N/A
    456553 8xoa:A (3.03) BS01 WRF ? GO:0022857 ... Q05940 N/A
    456554 8xof:R (2.6) BS01 A1LVW ? GO:0000139 ... Q99527 38744981
    456555 8xok:A (2.84) BS01 DU0 N/A GO:0001409 ... O15439 38886124
    456556 8xok:A (2.84) BS02 DU0 N/A GO:0001409 ... O15439 38886124
    456557 8xok:A (2.84) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    456558 8xok:A (2.84) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    456559 8xok:A (2.84) BS05 DU0 N/A GO:0001409 ... O15439 38886124
    456560 8xok:A (2.84) BS06 DU0 N/A GO:0001409 ... O15439 38886124
    456561 8xok:A (2.84) BS07 DU0 N/A GO:0001409 ... O15439 38886124
    456562 8xok:A (2.84) BS08 DU0 N/A GO:0001409 ... O15439 38886124
    456563 8xok:A (2.84) BS09 DU0 N/A GO:0001409 ... O15439 38886124
    456564 8xol:A (3.02) BS01 ANP N/A GO:0001409 ... O15439 38886124
    456565 8xol:A (3.02) BS02 DU0 N/A GO:0001409 ... O15439 38886124
    456566 8xol:A (3.02) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    456567 8xol:A (3.02) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    456568 8xom:A (3.05) BS01 ANP N/A GO:0001409 ... O15439 38886124
    456569 8xom:A (3.05) BS02 MTX N/A GO:0001409 ... O15439 38886124
    456570 8xom:A (3.05) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    456571 8xom:A (3.05) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    456572 8xom:A (3.05) BS05 DU0 N/A GO:0001409 ... O15439 38886124
    456573 8xom:A (3.05) BS06 DU0 N/A GO:0001409 ... O15439 38886124
    456574 8xom:A (3.05) BS07 DU0 N/A GO:0001409 ... O15439 38886124
    456575 8xon:O (1.96) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456576 8xon:O (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456577 8xon:P (1.96) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456578 8xon:P (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456579 8xon:Q (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456580 8xon:Q (1.96) BS03 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456581 8xon:Q (1.96) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456582 8xon:R (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456583 8xon:R (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456584 8xon:R (1.96) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456585 8xon:S (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456586 8xon:S (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456587 8xon:T (1.96) BS01 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456588 8xon:T (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456589 8xoo:O (1.84) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456590 8xoo:O (1.84) BS03 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456591 8xoo:O (1.84) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456592 8xoo:P (1.84) BS02 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456593 8xoo:P (1.84) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456594 8xoo:Q (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456595 8xoo:Q (1.84) BS03 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456596 8xoo:Q (1.84) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456597 8xoo:R (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456598 8xoo:R (1.84) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456599 8xoo:S (1.84) BS01 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456600 8xoo:S (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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