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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    456201 8xlp:4 (2.57) BS16 IHT N/A N/A N/A N/A
    456202 8xlp:4 (2.57) BS17 II0 N/A N/A N/A N/A
    456203 8xlp:5 (2.57) BS01 CLA N/A N/A N/A N/A
    456204 8xlp:5 (2.57) BS02 CLA N/A N/A N/A N/A
    456205 8xlp:5 (2.57) BS03 II0 N/A N/A N/A N/A
    456206 8xlp:5 (2.57) BS04 CLA N/A N/A N/A N/A
    456207 8xlp:5 (2.57) BS05 CLA N/A N/A N/A N/A
    456208 8xlp:5 (2.57) BS06 CLA N/A N/A N/A N/A
    456209 8xlp:5 (2.57) BS07 CLA N/A N/A N/A N/A
    456210 8xlp:5 (2.57) BS08 CLA N/A N/A N/A N/A
    456211 8xlp:5 (2.57) BS09 CLA N/A N/A N/A N/A
    456212 8xlp:5 (2.57) BS10 CLA N/A N/A N/A N/A
    456213 8xlp:5 (2.57) BS11 CLA N/A N/A N/A N/A
    456214 8xlp:5 (2.57) BS12 CLA N/A N/A N/A N/A
    456215 8xlp:5 (2.57) BS13 KC2 N/A N/A N/A N/A
    456216 8xlp:5 (2.57) BS14 CLA N/A N/A N/A N/A
    456217 8xlp:5 (2.57) BS15 CLA N/A N/A N/A N/A
    456218 8xlp:5 (2.57) BS16 II0 N/A N/A N/A N/A
    456219 8xlp:5 (2.57) BS17 II0 N/A N/A N/A N/A
    456220 8xlp:5 (2.57) BS18 II0 N/A N/A N/A N/A
    456221 8xlp:5 (2.57) BS19 II0 N/A N/A N/A N/A
    456222 8xlp:5 (2.57) BS20 IHT N/A N/A N/A N/A
    456223 8xlp:5 (2.57) BS21 CLA N/A N/A N/A N/A
    456224 8xlp:5 (2.57) BS22 II0 N/A N/A N/A N/A
    456225 8xlp:5 (2.57) BS23 WVN N/A N/A N/A N/A
    456226 8xlp:6 (2.57) BS01 CLA N/A N/A N/A N/A
    456227 8xlp:6 (2.57) BS02 CLA N/A N/A N/A N/A
    456228 8xlp:6 (2.57) BS03 CLA N/A N/A N/A N/A
    456229 8xlp:6 (2.57) BS04 CLA N/A N/A N/A N/A
    456230 8xlp:6 (2.57) BS05 KC2 N/A N/A N/A N/A
    456231 8xlp:6 (2.57) BS06 CLA N/A N/A N/A N/A
    456232 8xlp:6 (2.57) BS07 CLA N/A N/A N/A N/A
    456233 8xlp:6 (2.57) BS08 CLA N/A N/A N/A N/A
    456234 8xlp:6 (2.57) BS09 KC2 N/A N/A N/A N/A
    456235 8xlp:6 (2.57) BS10 CLA N/A N/A N/A N/A
    456236 8xlp:6 (2.57) BS11 CLA N/A N/A N/A N/A
    456237 8xlp:6 (2.57) BS12 II0 N/A N/A N/A N/A
    456238 8xlp:6 (2.57) BS13 II0 N/A N/A N/A N/A
    456239 8xlp:6 (2.57) BS14 II0 N/A N/A N/A N/A
    456240 8xlp:6 (2.57) BS15 II0 N/A N/A N/A N/A
    456241 8xlp:6 (2.57) BS16 WVN N/A N/A N/A N/A
    456242 8xlp:A (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    456243 8xlp:A (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    456244 8xlp:A (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    456245 8xlp:A (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    456246 8xlp:A (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    456247 8xlp:A (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    456248 8xlp:A (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    456249 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    456250 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    456251 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    456252 8xlp:B (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    456253 8xlp:B (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    456254 8xlp:B (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    456255 8xlp:B (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    456256 8xlp:B (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    456257 8xlp:B (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    456258 8xlp:B (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    456259 8xlp:B (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    456260 8xlp:B (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    456261 8xlp:B (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    456262 8xlp:B (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    456263 8xlp:B (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    456264 8xlp:B (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    456265 8xlp:B (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    456266 8xlp:B (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    456267 8xlp:B (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    456268 8xlp:B (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    456269 8xlp:B (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    456270 8xlp:B (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    456271 8xlp:C (2.57) BS01 CLA N/A N/A A6MVR2 N/A
    456272 8xlp:C (2.57) BS02 CLA N/A N/A A6MVR2 N/A
    456273 8xlp:C (2.57) BS03 CLA N/A N/A A6MVR2 N/A
    456274 8xlp:C (2.57) BS04 CLA N/A N/A A6MVR2 N/A
    456275 8xlp:C (2.57) BS05 CLA N/A N/A A6MVR2 N/A
    456276 8xlp:C (2.57) BS06 CLA N/A N/A A6MVR2 N/A
    456277 8xlp:C (2.57) BS07 CLA N/A N/A A6MVR2 N/A
    456278 8xlp:C (2.57) BS08 CLA N/A N/A A6MVR2 N/A
    456279 8xlp:C (2.57) BS09 CLA N/A N/A A6MVR2 N/A
    456280 8xlp:C (2.57) BS10 CLA N/A N/A A6MVR2 N/A
    456281 8xlp:C (2.57) BS11 CLA N/A N/A A6MVR2 N/A
    456282 8xlp:C (2.57) BS12 CLA N/A N/A A6MVR2 N/A
    456283 8xlp:C (2.57) BS13 CLA N/A N/A A6MVR2 N/A
    456284 8xlp:C (2.57) BS14 WVN N/A N/A A6MVR2 N/A
    456285 8xlp:C (2.57) BS15 WVN N/A N/A A6MVR2 N/A
    456286 8xlp:C (2.57) BS16 WVN N/A N/A A6MVR2 N/A
    456287 8xlp:D (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    456288 8xlp:D (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    456289 8xlp:D (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    456290 8xlp:D (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    456291 8xlp:D (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    456292 8xlp:D (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    456293 8xlp:D (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    456294 8xlp:D (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    456295 8xlp:D (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    456296 8xlp:E (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    456297 8xlp:F (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    456298 8xlp:F (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    456299 8xlp:G (2.57) BS01 CLA N/A N/A N/A N/A
    456300 8xlp:G (2.57) BS02 CLA N/A N/A N/A N/A
    456301 8xlp:G (2.57) BS03 CLA N/A N/A N/A N/A
    456302 8xlp:G (2.57) BS04 CLA N/A N/A N/A N/A
    456303 8xlp:G (2.57) BS05 CLA N/A N/A N/A N/A
    456304 8xlp:G (2.57) BS06 CLA N/A N/A N/A N/A
    456305 8xlp:G (2.57) BS07 CLA N/A N/A N/A N/A
    456306 8xlp:G (2.57) BS08 CLA N/A N/A N/A N/A
    456307 8xlp:H (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    456308 8xlp:H (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    456309 8xlp:H (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    456310 8xlp:H (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    456311 8xlp:H (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    456312 8xlp:I (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    456313 8xlp:I (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    456314 8xlp:K (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    456315 8xlp:K (2.57) BS02 CLA N/A GO:0005737 ... A6MVZ3 N/A
    456316 8xlp:K (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    456317 8xlp:K (2.57) BS04 WVN N/A GO:0005737 ... A6MVZ3 N/A
    456318 8xlp:L (2.57) BS01 CLA N/A GO:0005737 ... A6MVV3 N/A
    456319 8xlp:N (2.57) BS01 II0 N/A N/A N/A N/A
    456320 8xlp:N (2.57) BS02 CLA N/A N/A N/A N/A
    456321 8xlp:N (2.57) BS03 CLA N/A N/A N/A N/A
    456322 8xlp:N (2.57) BS04 CLA N/A N/A N/A N/A
    456323 8xlp:N (2.57) BS05 CLA N/A N/A N/A N/A
    456324 8xlp:N (2.57) BS06 KC2 N/A N/A N/A N/A
    456325 8xlp:N (2.57) BS07 CLA N/A N/A N/A N/A
    456326 8xlp:N (2.57) BS08 CLA N/A N/A N/A N/A
    456327 8xlp:N (2.57) BS09 CLA N/A N/A N/A N/A
    456328 8xlp:N (2.57) BS10 CLA N/A N/A N/A N/A
    456329 8xlp:N (2.57) BS11 KC2 N/A N/A N/A N/A
    456330 8xlp:N (2.57) BS12 KC2 N/A N/A N/A N/A
    456331 8xlp:N (2.57) BS13 KC2 N/A N/A N/A N/A
    456332 8xlp:N (2.57) BS14 CLA N/A N/A N/A N/A
    456333 8xlp:N (2.57) BS15 CLA N/A N/A N/A N/A
    456334 8xlp:N (2.57) BS16 II0 N/A N/A N/A N/A
    456335 8xlp:N (2.57) BS17 II0 N/A N/A N/A N/A
    456336 8xlp:N (2.57) BS18 II0 N/A N/A N/A N/A
    456337 8xlp:N (2.57) BS19 II0 N/A N/A N/A N/A
    456338 8xlp:N (2.57) BS20 IHT N/A N/A N/A N/A
    456339 8xlp:O (2.57) BS01 CLA N/A N/A N/A N/A
    456340 8xlp:O (2.57) BS02 CLA N/A N/A N/A N/A
    456341 8xlp:O (2.57) BS03 CLA N/A N/A N/A N/A
    456342 8xlp:O (2.57) BS04 CLA N/A N/A N/A N/A
    456343 8xlp:O (2.57) BS05 CLA N/A N/A N/A N/A
    456344 8xlp:O (2.57) BS06 CLA N/A N/A N/A N/A
    456345 8xlp:O (2.57) BS07 CLA N/A N/A N/A N/A
    456346 8xlp:O (2.57) BS08 CLA N/A N/A N/A N/A
    456347 8xlp:O (2.57) BS09 CLA N/A N/A N/A N/A
    456348 8xlp:O (2.57) BS10 KC2 N/A N/A N/A N/A
    456349 8xlp:O (2.57) BS11 CLA N/A N/A N/A N/A
    456350 8xlp:O (2.57) BS12 CLA N/A N/A N/A N/A
    456351 8xlp:O (2.57) BS13 II0 N/A N/A N/A N/A
    456352 8xlp:O (2.57) BS14 II0 N/A N/A N/A N/A
    456353 8xlp:O (2.57) BS15 II0 N/A N/A N/A N/A
    456354 8xlp:O (2.57) BS16 II0 N/A N/A N/A N/A
    456355 8xlp:O (2.57) BS17 IHT N/A N/A N/A N/A
    456356 8xlp:O (2.57) BS18 II0 N/A N/A N/A N/A
    456357 8xlp:P (2.57) BS01 CLA N/A N/A N/A N/A
    456358 8xlp:P (2.57) BS02 CLA N/A N/A N/A N/A
    456359 8xlp:P (2.57) BS03 CLA N/A N/A N/A N/A
    456360 8xlp:P (2.57) BS04 CLA N/A N/A N/A N/A
    456361 8xlp:P (2.57) BS05 KC2 N/A N/A N/A N/A
    456362 8xlp:P (2.57) BS06 CLA N/A N/A N/A N/A
    456363 8xlp:P (2.57) BS07 CLA N/A N/A N/A N/A
    456364 8xlp:P (2.57) BS08 CLA N/A N/A N/A N/A
    456365 8xlp:P (2.57) BS09 CLA N/A N/A N/A N/A
    456366 8xlp:P (2.57) BS10 CLA N/A N/A N/A N/A
    456367 8xlp:P (2.57) BS11 CLA N/A N/A N/A N/A
    456368 8xlp:P (2.57) BS12 II0 N/A N/A N/A N/A
    456369 8xlp:P (2.57) BS13 II0 N/A N/A N/A N/A
    456370 8xlp:P (2.57) BS14 II0 N/A N/A N/A N/A
    456371 8xlp:P (2.57) BS15 II0 N/A N/A N/A N/A
    456372 8xlp:P (2.57) BS16 WVN N/A N/A N/A N/A
    456373 8xlp:Q (2.57) BS01 CLA N/A N/A N/A N/A
    456374 8xlp:Q (2.57) BS02 CLA N/A N/A N/A N/A
    456375 8xlp:Q (2.57) BS03 CLA N/A N/A N/A N/A
    456376 8xlp:Q (2.57) BS04 KC2 N/A N/A N/A N/A
    456377 8xlp:Q (2.57) BS05 CLA N/A N/A N/A N/A
    456378 8xlp:Q (2.57) BS06 CLA N/A N/A N/A N/A
    456379 8xlp:Q (2.57) BS07 CLA N/A N/A N/A N/A
    456380 8xlp:Q (2.57) BS08 CLA N/A N/A N/A N/A
    456381 8xlp:Q (2.57) BS09 KC2 N/A N/A N/A N/A
    456382 8xlp:Q (2.57) BS10 CLA N/A N/A N/A N/A
    456383 8xlp:Q (2.57) BS11 CLA N/A N/A N/A N/A
    456384 8xlp:Q (2.57) BS12 II0 N/A N/A N/A N/A
    456385 8xlp:Q (2.57) BS13 II0 N/A N/A N/A N/A
    456386 8xlp:Q (2.57) BS14 II0 N/A N/A N/A N/A
    456387 8xlp:Q (2.57) BS15 II0 N/A N/A N/A N/A
    456388 8xlp:Q (2.57) BS16 IHT N/A N/A N/A N/A
    456389 8xlp:Q (2.57) BS17 II0 N/A N/A N/A N/A
    456390 8xlp:Q (2.57) BS18 IHT N/A N/A N/A N/A
    456391 8xlp:R (2.57) BS01 CLA N/A N/A N/A N/A
    456392 8xlp:R (2.57) BS02 CLA N/A N/A N/A N/A
    456393 8xlp:R (2.57) BS03 II0 N/A N/A N/A N/A
    456394 8xlp:R (2.57) BS04 CLA N/A N/A N/A N/A
    456395 8xlp:R (2.57) BS05 CLA N/A N/A N/A N/A
    456396 8xlp:R (2.57) BS06 CLA N/A N/A N/A N/A
    456397 8xlp:R (2.57) BS07 CLA N/A N/A N/A N/A
    456398 8xlp:R (2.57) BS08 CLA N/A N/A N/A N/A
    456399 8xlp:R (2.57) BS09 CLA N/A N/A N/A N/A
    456400 8xlp:R (2.57) BS10 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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