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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    454801 8wql:BE (3.5) BS10 CLA N/A N/A N/A N/A
    454802 8wql:BE (3.5) BS11 CLA N/A N/A N/A N/A
    454803 8wql:BE (3.5) BS12 CLA N/A N/A N/A N/A
    454804 8wql:BE (3.5) BS13 CLA N/A N/A N/A N/A
    454805 8wql:BE (3.5) BS14 CLA N/A N/A N/A N/A
    454806 8wql:BE (3.5) BS15 CLA N/A N/A N/A N/A
    454807 8wql:BE (3.5) BS16 CLA N/A N/A N/A N/A
    454808 8wql:C1 (3.5) BS01 CLA N/A N/A N/A N/A
    454809 8wql:C1 (3.5) BS02 CLA N/A N/A N/A N/A
    454810 8wql:C1 (3.5) BS03 CLA N/A N/A N/A N/A
    454811 8wql:C1 (3.5) BS04 CLA N/A N/A N/A N/A
    454812 8wql:C1 (3.5) BS05 CLA N/A N/A N/A N/A
    454813 8wql:C1 (3.5) BS06 CLA N/A N/A N/A N/A
    454814 8wql:C1 (3.5) BS07 CLA N/A N/A N/A N/A
    454815 8wql:C1 (3.5) BS08 CLA N/A N/A N/A N/A
    454816 8wql:C1 (3.5) BS09 CLA N/A N/A N/A N/A
    454817 8wql:C1 (3.5) BS10 CLA N/A N/A N/A N/A
    454818 8wql:C1 (3.5) BS11 CLA N/A N/A N/A N/A
    454819 8wql:C1 (3.5) BS12 CLA N/A N/A N/A N/A
    454820 8wql:C1 (3.5) BS13 CLA N/A N/A N/A N/A
    454821 8wql:CD (3.5) BS01 CLA N/A N/A N/A N/A
    454822 8wql:CD (3.5) BS02 CLA N/A N/A N/A N/A
    454823 8wql:CD (3.5) BS03 CLA N/A N/A N/A N/A
    454824 8wql:CD (3.5) BS04 CLA N/A N/A N/A N/A
    454825 8wql:CD (3.5) BS05 CLA N/A N/A N/A N/A
    454826 8wql:CD (3.5) BS06 CLA N/A N/A N/A N/A
    454827 8wql:CD (3.5) BS07 CLA N/A N/A N/A N/A
    454828 8wql:CD (3.5) BS08 CLA N/A N/A N/A N/A
    454829 8wql:CD (3.5) BS09 CLA N/A N/A N/A N/A
    454830 8wql:CD (3.5) BS10 CLA N/A N/A N/A N/A
    454831 8wql:CD (3.5) BS11 CLA N/A N/A N/A N/A
    454832 8wql:CD (3.5) BS12 CLA N/A N/A N/A N/A
    454833 8wql:CD (3.5) BS13 CLA N/A N/A N/A N/A
    454834 8wql:CE (3.5) BS01 CLA N/A N/A N/A N/A
    454835 8wql:CE (3.5) BS02 CLA N/A N/A N/A N/A
    454836 8wql:CE (3.5) BS03 CLA N/A N/A N/A N/A
    454837 8wql:CE (3.5) BS04 CLA N/A N/A N/A N/A
    454838 8wql:CE (3.5) BS05 CLA N/A N/A N/A N/A
    454839 8wql:CE (3.5) BS06 CLA N/A N/A N/A N/A
    454840 8wql:CE (3.5) BS07 CLA N/A N/A N/A N/A
    454841 8wql:CE (3.5) BS08 CLA N/A N/A N/A N/A
    454842 8wql:CE (3.5) BS09 CLA N/A N/A N/A N/A
    454843 8wql:CE (3.5) BS10 CLA N/A N/A N/A N/A
    454844 8wql:CE (3.5) BS11 CLA N/A N/A N/A N/A
    454845 8wql:CE (3.5) BS12 CLA N/A N/A N/A N/A
    454846 8wql:CE (3.5) BS13 CLA N/A N/A N/A N/A
    454847 8wql:D1 (3.5) BS02 CLA N/A N/A N/A N/A
    454848 8wql:D1 (3.5) BS03 BCT N/A N/A N/A N/A
    454849 8wql:D1 (3.5) BS04 PHO N/A N/A N/A N/A
    454850 8wql:D1 (3.5) BS05 CLA N/A N/A N/A N/A
    454851 8wql:D1 (3.5) BS06 CLA N/A N/A N/A N/A
    454852 8wql:D1 (3.5) BS07 CLA N/A N/A N/A N/A
    454853 8wql:D1 (3.5) BS09 PHO N/A N/A N/A N/A
    454854 8wql:D1 (3.5) BS10 CLA N/A N/A N/A N/A
    454855 8wql:D1 (3.5) BS11 CLA N/A N/A N/A N/A
    454856 8wql:D1 (3.5) BS12 CLA N/A N/A N/A N/A
    454857 8wql:DD (3.5) BS02 CLA N/A N/A N/A N/A
    454858 8wql:DD (3.5) BS03 BCT N/A N/A N/A N/A
    454859 8wql:DD (3.5) BS04 CLA N/A N/A N/A N/A
    454860 8wql:DD (3.5) BS05 CLA N/A N/A N/A N/A
    454861 8wql:DD (3.5) BS06 CLA N/A N/A N/A N/A
    454862 8wql:DD (3.5) BS07 PHO N/A N/A N/A N/A
    454863 8wql:DD (3.5) BS09 PHO N/A N/A N/A N/A
    454864 8wql:DD (3.5) BS10 CLA N/A N/A N/A N/A
    454865 8wql:DD (3.5) BS11 CLA N/A N/A N/A N/A
    454866 8wql:DD (3.5) BS12 CLA N/A N/A N/A N/A
    454867 8wql:DE (3.5) BS02 CLA N/A N/A N/A N/A
    454868 8wql:DE (3.5) BS03 BCT N/A N/A N/A N/A
    454869 8wql:DE (3.5) BS04 CLA N/A N/A N/A N/A
    454870 8wql:DE (3.5) BS05 CLA N/A N/A N/A N/A
    454871 8wql:DE (3.5) BS06 CLA N/A N/A N/A N/A
    454872 8wql:DE (3.5) BS07 PHO N/A N/A N/A N/A
    454873 8wql:DE (3.5) BS09 PHO N/A N/A N/A N/A
    454874 8wql:DE (3.5) BS10 CLA N/A N/A N/A N/A
    454875 8wql:DE (3.5) BS11 CLA N/A N/A N/A N/A
    454876 8wql:DE (3.5) BS12 CLA N/A N/A N/A N/A
    454877 8wql:E1 (3.5) BS01 HEM N/A N/A N/A N/A
    454878 8wql:ED (3.5) BS01 HEM N/A N/A N/A N/A
    454879 8wql:EE (3.5) BS01 HEM N/A N/A N/A N/A
    454880 8wql:F1 (3.5) BS01 HEM N/A N/A N/A N/A
    454881 8wql:FD (3.5) BS01 HEM N/A N/A N/A N/A
    454882 8wql:FE (3.5) BS01 HEM N/A N/A N/A N/A
    454883 8wql:H1 (3.5) BS01 CLA N/A N/A N/A N/A
    454884 8wql:H1 (3.5) BS02 CLA N/A N/A N/A N/A
    454885 8wql:H1 (3.5) BS03 CLA N/A N/A N/A N/A
    454886 8wql:HD (3.5) BS01 CLA N/A N/A N/A N/A
    454887 8wql:HD (3.5) BS02 CLA N/A N/A N/A N/A
    454888 8wql:HD (3.5) BS03 CLA N/A N/A N/A N/A
    454889 8wql:HE (3.5) BS01 CLA N/A N/A N/A N/A
    454890 8wql:HE (3.5) BS02 CLA N/A N/A N/A N/A
    454891 8wql:HE (3.5) BS03 CLA N/A N/A N/A N/A
    454892 8wql:I1 (3.5) BS01 CLA N/A N/A N/A N/A
    454893 8wql:ID (3.5) BS01 CLA N/A N/A N/A N/A
    454894 8wql:IE (3.5) BS01 CLA N/A N/A N/A N/A
    454895 8wql:K1 (3.5) BS01 CLA N/A N/A N/A N/A
    454896 8wql:K1 (3.5) BS02 CLA N/A N/A N/A N/A
    454897 8wql:KD (3.5) BS01 CLA N/A N/A N/A N/A
    454898 8wql:KD (3.5) BS02 CLA N/A N/A N/A N/A
    454899 8wql:KE (3.5) BS01 CLA N/A N/A N/A N/A
    454900 8wql:KE (3.5) BS02 CLA N/A N/A N/A N/A
    454901 8wql:V1 (3.5) BS01 HEM N/A N/A N/A N/A
    454902 8wql:VD (3.5) BS01 HEM N/A N/A N/A N/A
    454903 8wql:VE (3.5) BS01 HEM N/A N/A N/A N/A
    454904 8wql:X1 (3.5) BS01 CLA N/A N/A N/A N/A
    454905 8wql:XD (3.5) BS01 CLA N/A N/A N/A N/A
    454906 8wql:XE (3.5) BS01 CLA N/A N/A N/A N/A
    454907 8wql:Z1 (3.5) BS01 CLA N/A N/A N/A N/A
    454908 8wql:ZD (3.5) BS01 CLA N/A N/A N/A N/A
    454909 8wql:ZE (3.5) BS01 CLA N/A N/A N/A N/A
    454910 8wql:a1 (3.5) BS01 OEX N/A N/A N/A N/A
    454911 8wql:a1 (3.5) BS02 CLA N/A N/A N/A N/A
    454912 8wql:a1 (3.5) BS03 CLA N/A N/A N/A N/A
    454913 8wql:a1 (3.5) BS04 CLA N/A N/A N/A N/A
    454914 8wql:a1 (3.5) BS05 BCT N/A N/A N/A N/A
    454915 8wql:a1 (3.5) BS06 PHO N/A N/A N/A N/A
    454916 8wql:a1 (3.5) BS07 CLA N/A N/A N/A N/A
    454917 8wql:a1 (3.5) BS08 PHO N/A N/A N/A N/A
    454918 8wql:a1 (3.5) BS09 CLA N/A N/A N/A N/A
    454919 8wql:aD (3.5) BS01 OEX N/A N/A N/A N/A
    454920 8wql:aD (3.5) BS02 CLA N/A N/A N/A N/A
    454921 8wql:aD (3.5) BS03 CLA N/A N/A N/A N/A
    454922 8wql:aD (3.5) BS04 CLA N/A N/A N/A N/A
    454923 8wql:aD (3.5) BS05 BCT N/A N/A N/A N/A
    454924 8wql:aD (3.5) BS06 PHO N/A N/A N/A N/A
    454925 8wql:aD (3.5) BS07 PHO N/A N/A N/A N/A
    454926 8wql:aD (3.5) BS08 CLA N/A N/A N/A N/A
    454927 8wql:aD (3.5) BS09 CLA N/A N/A N/A N/A
    454928 8wql:aE (3.5) BS01 OEX N/A N/A N/A N/A
    454929 8wql:aE (3.5) BS02 CLA N/A N/A N/A N/A
    454930 8wql:aE (3.5) BS03 CLA N/A N/A N/A N/A
    454931 8wql:aE (3.5) BS04 CLA N/A N/A N/A N/A
    454932 8wql:aE (3.5) BS05 BCT N/A N/A N/A N/A
    454933 8wql:aE (3.5) BS06 PHO N/A N/A N/A N/A
    454934 8wql:aE (3.5) BS07 PHO N/A N/A N/A N/A
    454935 8wql:aE (3.5) BS08 CLA N/A N/A N/A N/A
    454936 8wql:aE (3.5) BS09 CLA N/A N/A N/A N/A
    454937 8wql:b1 (3.5) BS01 CLA N/A N/A N/A N/A
    454938 8wql:b1 (3.5) BS02 CLA N/A N/A N/A N/A
    454939 8wql:b1 (3.5) BS03 CLA N/A N/A N/A N/A
    454940 8wql:b1 (3.5) BS04 CLA N/A N/A N/A N/A
    454941 8wql:b1 (3.5) BS05 CLA N/A N/A N/A N/A
    454942 8wql:b1 (3.5) BS06 CLA N/A N/A N/A N/A
    454943 8wql:b1 (3.5) BS07 CLA N/A N/A N/A N/A
    454944 8wql:b1 (3.5) BS08 CLA N/A N/A N/A N/A
    454945 8wql:b1 (3.5) BS09 CLA N/A N/A N/A N/A
    454946 8wql:b1 (3.5) BS10 CLA N/A N/A N/A N/A
    454947 8wql:b1 (3.5) BS11 CLA N/A N/A N/A N/A
    454948 8wql:b1 (3.5) BS12 CLA N/A N/A N/A N/A
    454949 8wql:b1 (3.5) BS13 CLA N/A N/A N/A N/A
    454950 8wql:b1 (3.5) BS14 CLA N/A N/A N/A N/A
    454951 8wql:b1 (3.5) BS15 CLA N/A N/A N/A N/A
    454952 8wql:b1 (3.5) BS16 CLA N/A N/A N/A N/A
    454953 8wql:bD (3.5) BS01 CLA N/A N/A N/A N/A
    454954 8wql:bD (3.5) BS02 CLA N/A N/A N/A N/A
    454955 8wql:bD (3.5) BS03 CLA N/A N/A N/A N/A
    454956 8wql:bD (3.5) BS04 CLA N/A N/A N/A N/A
    454957 8wql:bD (3.5) BS05 CLA N/A N/A N/A N/A
    454958 8wql:bD (3.5) BS06 CLA N/A N/A N/A N/A
    454959 8wql:bD (3.5) BS07 CLA N/A N/A N/A N/A
    454960 8wql:bD (3.5) BS08 CLA N/A N/A N/A N/A
    454961 8wql:bD (3.5) BS09 CLA N/A N/A N/A N/A
    454962 8wql:bD (3.5) BS10 CLA N/A N/A N/A N/A
    454963 8wql:bD (3.5) BS11 CLA N/A N/A N/A N/A
    454964 8wql:bD (3.5) BS12 CLA N/A N/A N/A N/A
    454965 8wql:bD (3.5) BS13 CLA N/A N/A N/A N/A
    454966 8wql:bD (3.5) BS14 CLA N/A N/A N/A N/A
    454967 8wql:bD (3.5) BS15 CLA N/A N/A N/A N/A
    454968 8wql:bD (3.5) BS16 CLA N/A N/A N/A N/A
    454969 8wql:bE (3.5) BS01 CLA N/A N/A N/A N/A
    454970 8wql:bE (3.5) BS02 CLA N/A N/A N/A N/A
    454971 8wql:bE (3.5) BS03 CLA N/A N/A N/A N/A
    454972 8wql:bE (3.5) BS04 CLA N/A N/A N/A N/A
    454973 8wql:bE (3.5) BS05 CLA N/A N/A N/A N/A
    454974 8wql:bE (3.5) BS06 CLA N/A N/A N/A N/A
    454975 8wql:bE (3.5) BS07 CLA N/A N/A N/A N/A
    454976 8wql:bE (3.5) BS08 CLA N/A N/A N/A N/A
    454977 8wql:bE (3.5) BS09 CLA N/A N/A N/A N/A
    454978 8wql:bE (3.5) BS10 CLA N/A N/A N/A N/A
    454979 8wql:bE (3.5) BS11 CLA N/A N/A N/A N/A
    454980 8wql:bE (3.5) BS12 CLA N/A N/A N/A N/A
    454981 8wql:bE (3.5) BS13 CLA N/A N/A N/A N/A
    454982 8wql:bE (3.5) BS14 CLA N/A N/A N/A N/A
    454983 8wql:bE (3.5) BS15 CLA N/A N/A N/A N/A
    454984 8wql:bE (3.5) BS16 CLA N/A N/A N/A N/A
    454985 8wql:c1 (3.5) BS01 CLA N/A N/A N/A N/A
    454986 8wql:c1 (3.5) BS02 CLA N/A N/A N/A N/A
    454987 8wql:c1 (3.5) BS03 CLA N/A N/A N/A N/A
    454988 8wql:c1 (3.5) BS04 CLA N/A N/A N/A N/A
    454989 8wql:c1 (3.5) BS05 CLA N/A N/A N/A N/A
    454990 8wql:c1 (3.5) BS06 CLA N/A N/A N/A N/A
    454991 8wql:c1 (3.5) BS07 CLA N/A N/A N/A N/A
    454992 8wql:c1 (3.5) BS08 CLA N/A N/A N/A N/A
    454993 8wql:c1 (3.5) BS09 CLA N/A N/A N/A N/A
    454994 8wql:c1 (3.5) BS10 CLA N/A N/A N/A N/A
    454995 8wql:c1 (3.5) BS11 CLA N/A N/A N/A N/A
    454996 8wql:c1 (3.5) BS12 CLA N/A N/A N/A N/A
    454997 8wql:c1 (3.5) BS13 CLA N/A N/A N/A N/A
    454998 8wql:cD (3.5) BS01 CLA N/A N/A N/A N/A
    454999 8wql:cD (3.5) BS02 CLA N/A N/A N/A N/A
    455000 8wql:cD (3.5) BS03 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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