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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    454601 8wmw:j (3.3) BS02 CLA N/A N/A N/A 38734819
    454602 8wmw:j (3.3) BS03 II0 N/A N/A N/A 38734819
    454603 8wmw:j (3.3) BS04 WVN N/A N/A N/A 38734819
    454604 8wmw:j (3.3) BS05 CLA N/A N/A N/A 38734819
    454605 8wmw:j (3.3) BS06 CLA N/A N/A N/A 38734819
    454606 8wmw:j (3.3) BS07 CLA N/A N/A N/A 38734819
    454607 8wmw:j (3.3) BS08 CLA N/A N/A N/A 38734819
    454608 8wmw:j (3.3) BS09 CLA N/A N/A N/A 38734819
    454609 8wmw:j (3.3) BS10 CLA N/A N/A N/A 38734819
    454610 8wmw:j (3.3) BS11 CLA N/A N/A N/A 38734819
    454611 8wmw:j (3.3) BS12 CLA N/A N/A N/A 38734819
    454612 8wmw:j (3.3) BS13 CLA N/A N/A N/A 38734819
    454613 8wmw:j (3.3) BS14 KC2 N/A N/A N/A 38734819
    454614 8wmw:j (3.3) BS15 CLA N/A N/A N/A 38734819
    454615 8wmw:j (3.3) BS16 CLA N/A N/A N/A 38734819
    454616 8wmw:j (3.3) BS17 II0 N/A N/A N/A 38734819
    454617 8wmw:j (3.3) BS18 II0 N/A N/A N/A 38734819
    454618 8wmw:j (3.3) BS19 IHT N/A N/A N/A 38734819
    454619 8wmw:j (3.3) BS20 II0 N/A N/A N/A 38734819
    454620 8wmw:k (3.3) BS01 CLA N/A N/A N/A 38734819
    454621 8wmw:k (3.3) BS02 CLA N/A N/A N/A 38734819
    454622 8wmw:k (3.3) BS03 CLA N/A N/A N/A 38734819
    454623 8wmw:k (3.3) BS04 CLA N/A N/A N/A 38734819
    454624 8wmw:k (3.3) BS05 CLA N/A N/A N/A 38734819
    454625 8wmw:k (3.3) BS06 CLA N/A N/A N/A 38734819
    454626 8wmw:k (3.3) BS07 CLA N/A N/A N/A 38734819
    454627 8wmw:k (3.3) BS08 CLA N/A N/A N/A 38734819
    454628 8wmw:k (3.3) BS09 CLA N/A N/A N/A 38734819
    454629 8wmw:k (3.3) BS10 KC2 N/A N/A N/A 38734819
    454630 8wmw:k (3.3) BS11 KC2 N/A N/A N/A 38734819
    454631 8wmw:k (3.3) BS12 KC2 N/A N/A N/A 38734819
    454632 8wmw:k (3.3) BS13 CLA N/A N/A N/A 38734819
    454633 8wmw:k (3.3) BS14 II0 N/A N/A N/A 38734819
    454634 8wmw:k (3.3) BS15 II0 N/A N/A N/A 38734819
    454635 8wmw:k (3.3) BS16 II0 N/A N/A N/A 38734819
    454636 8wmw:k (3.3) BS17 IHT N/A N/A N/A 38734819
    454637 8wmw:k (3.3) BS18 II0 N/A N/A N/A 38734819
    454638 8wmw:k (3.3) BS19 II0 N/A N/A N/A 38734819
    454639 8wmw:k (3.3) BS20 CLA N/A N/A N/A 38734819
    454640 8wmy:A (1.91) BS01 ADP 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    454641 8wmy:B (1.91) BS01 ADP 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    454642 8wng:A (1.92) BS01 ILE 6.1.1.5 GO:0000049 ... P56456 38246751
    454643 8wni:A (1.95) BS02 VAL 6.1.1.5 GO:0000049 ... P56456 38246751
    454644 8wnj:A (1.78) BS02 GV6 6.1.1.5 GO:0000049 ... P56456 38246751
    454645 8wnt:B (3.42) BS01 ALA ? GO:0003333 ... Q9NS82 38589439
    454646 8wnw:Q (3.5) BS01 CLA N/A N/A N/A 38734819
    454647 8wny:B (3.5) BS01 DSN ? GO:0003333 ... Q9NS82 38589439
    454648 8wo2:A (2.34) BS02 WN9 6.1.1.5 GO:0000049 ... P56456 38246751
    454649 8wo3:A (2.2) BS02 MRC 6.1.1.5 GO:0000049 ... P56456 38246751
    454650 8wom:A (3.5) BS01 BLD ? GO:0005515 ... Q9LJX0 38513023
    454651 8woo:A (3.9) BS01 ANP ? GO:0005515 ... Q9LJX0 38513023
    454652 8woo:A (3.9) BS02 ANP ? GO:0005515 ... Q9LJX0 38513023
    454653 8woo:A (3.9) BS03 BLD ? GO:0005515 ... Q9LJX0 38513023
    454654 8wop:A (2.35) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454655 8wop:A (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454656 8wop:B (2.35) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454657 8wop:B (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454658 8woq:A (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454659 8woq:A (2.85) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    454660 8woq:A (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    454661 8woq:A (2.85) BS06 SPL ? GO:0016020 ... Q9NXL6 38378654
    454662 8woq:B (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454663 8woq:B (2.85) BS04 SPL ? GO:0016020 ... Q9NXL6 38378654
    454664 8woq:B (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    454665 8woq:B (2.85) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    454666 8woq:B (2.85) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    454667 8woq:B (2.85) BS08 CLR ? GO:0016020 ... Q9NXL6 38378654
    454668 8wor:A (2.66) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454669 8wor:A (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    454670 8wor:A (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    454671 8wor:A (2.66) BS06 SPL ? GO:0016020 ... Q9NXL6 38378654
    454672 8wor:A (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    454673 8wor:B (2.66) BS03 SPL ? GO:0016020 ... Q9NXL6 38378654
    454674 8wor:B (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    454675 8wor:B (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    454676 8wor:B (2.66) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    454677 8wor:B (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    454678 8wos:A (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    454679 8wos:A (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    454680 8wos:A (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454681 8wos:B (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    454682 8wos:B (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    454683 8wos:B (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454684 8wot:A (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    454685 8wot:A (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    454686 8wot:A (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454687 8wot:B (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    454688 8wot:B (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    454689 8wot:B (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    454690 8wov:A (2.25) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454691 8wov:A (2.25) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454692 8wov:B (2.25) BS01 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454693 8wov:B (2.25) BS02 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454694 8wow:A (2.6) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454695 8wow:A (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454696 8wow:B (2.6) BS01 UDP 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454697 8wow:B (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    454698 8wp0:A (3.4) BS01 ATP ? GO:0005515 ... Q9LJX0 38513023
    454699 8wp0:A (3.4) BS02 ATP ? GO:0005515 ... Q9LJX0 38513023
    454700 8wp1:A (3.15) BS01 U9S N/A N/A Q9BXA5 38923454
    454701 8wp5:A (2.57006) BS01 UDP N/A N/A N/A 38816433
    454702 8wpe:A (2.7) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    454703 8wpf:A (3.0) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    454704 8wpg:A (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    454705 8wpg:A (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    454706 8wpg:B (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    454707 8wpg:B (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    454708 8wpk:A (2.7) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    454709 8wpu:A (3.1) BS01 TRP ? GO:0004930 ... P41180 37919470
    454710 8wpu:A (3.1) BS03 YP4 ? GO:0004930 ... P41180 37919470
    454711 8wpu:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 37919470
    454712 8wpu:B (3.1) BS02 TRP ? GO:0004930 ... P41180 37919470
    454713 8wpu:B (3.1) BS04 CLR ? GO:0004930 ... P41180 37919470
    454714 8wq2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 38599770
    454715 8wq2:AS2P (4.1) BS03 UNK ? GO:0003735 ... P39478 38599770
    454716 8wq2:AS2P (4.1) BS04 UNK ? GO:0003735 ... P39478 38599770
    454717 8wq2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 38599770
    454718 8wq2:AS5P (4.1) BS03 UNK ? GO:0003723 ... O05641 38599770
    454719 8wq4:AS5P (4.53) BS02 UNK ? GO:0003723 ... O05641 38599770
    454720 8wq4:AS5P (4.53) BS03 UNK ? GO:0003723 ... O05641 38599770
    454721 8wq4:AS8P (4.53) BS02 UNK ? GO:0003735 ... O05636 38599770
    454722 8wq9:A (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    454723 8wq9:A (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    454724 8wq9:B (1.97) BS01 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    454725 8wq9:B (1.97) BS02 ABU 3.5.2.2 GO:0004157 ... Q9I676 38056157
    454726 8wqj:A (2.14) BS01 PLP N/A N/A A0A0P1EM06 N/A
    454727 8wqj:A (2.14) BS02 PLP N/A N/A A0A0P1EM06 N/A
    454728 8wqj:B (2.14) BS01 PLP N/A N/A A0A0P1EM06 N/A
    454729 8wqj:B (2.14) BS02 PLP N/A N/A A0A0P1EM06 N/A
    454730 8wql:A1 (3.5) BS02 OEX N/A N/A N/A N/A
    454731 8wql:A1 (3.5) BS03 CLA N/A N/A N/A N/A
    454732 8wql:A1 (3.5) BS04 CLA N/A N/A N/A N/A
    454733 8wql:A1 (3.5) BS05 BCT N/A N/A N/A N/A
    454734 8wql:A1 (3.5) BS06 PHO N/A N/A N/A N/A
    454735 8wql:A1 (3.5) BS07 CLA N/A N/A N/A N/A
    454736 8wql:A1 (3.5) BS08 CLA N/A N/A N/A N/A
    454737 8wql:A1 (3.5) BS09 PHO N/A N/A N/A N/A
    454738 8wql:A1 (3.5) BS10 CLA N/A N/A N/A N/A
    454739 8wql:A1 (3.5) BS11 CLA N/A N/A N/A N/A
    454740 8wql:AD (3.5) BS02 OEX N/A N/A N/A N/A
    454741 8wql:AD (3.5) BS03 CLA N/A N/A N/A N/A
    454742 8wql:AD (3.5) BS04 CLA N/A N/A N/A N/A
    454743 8wql:AD (3.5) BS05 BCT N/A N/A N/A N/A
    454744 8wql:AD (3.5) BS06 CLA N/A N/A N/A N/A
    454745 8wql:AD (3.5) BS07 CLA N/A N/A N/A N/A
    454746 8wql:AD (3.5) BS08 PHO N/A N/A N/A N/A
    454747 8wql:AD (3.5) BS09 PHO N/A N/A N/A N/A
    454748 8wql:AD (3.5) BS10 CLA N/A N/A N/A N/A
    454749 8wql:AD (3.5) BS11 CLA N/A N/A N/A N/A
    454750 8wql:AE (3.5) BS02 OEX N/A N/A N/A N/A
    454751 8wql:AE (3.5) BS03 CLA N/A N/A N/A N/A
    454752 8wql:AE (3.5) BS04 CLA N/A N/A N/A N/A
    454753 8wql:AE (3.5) BS05 BCT N/A N/A N/A N/A
    454754 8wql:AE (3.5) BS06 CLA N/A N/A N/A N/A
    454755 8wql:AE (3.5) BS07 CLA N/A N/A N/A N/A
    454756 8wql:AE (3.5) BS08 PHO N/A N/A N/A N/A
    454757 8wql:AE (3.5) BS09 PHO N/A N/A N/A N/A
    454758 8wql:AE (3.5) BS10 CLA N/A N/A N/A N/A
    454759 8wql:AE (3.5) BS11 CLA N/A N/A N/A N/A
    454760 8wql:B1 (3.5) BS01 CLA N/A N/A N/A N/A
    454761 8wql:B1 (3.5) BS02 CLA N/A N/A N/A N/A
    454762 8wql:B1 (3.5) BS03 CLA N/A N/A N/A N/A
    454763 8wql:B1 (3.5) BS04 CLA N/A N/A N/A N/A
    454764 8wql:B1 (3.5) BS05 CLA N/A N/A N/A N/A
    454765 8wql:B1 (3.5) BS06 CLA N/A N/A N/A N/A
    454766 8wql:B1 (3.5) BS07 CLA N/A N/A N/A N/A
    454767 8wql:B1 (3.5) BS08 CLA N/A N/A N/A N/A
    454768 8wql:B1 (3.5) BS09 CLA N/A N/A N/A N/A
    454769 8wql:B1 (3.5) BS10 CLA N/A N/A N/A N/A
    454770 8wql:B1 (3.5) BS11 CLA N/A N/A N/A N/A
    454771 8wql:B1 (3.5) BS12 CLA N/A N/A N/A N/A
    454772 8wql:B1 (3.5) BS13 CLA N/A N/A N/A N/A
    454773 8wql:B1 (3.5) BS14 CLA N/A N/A N/A N/A
    454774 8wql:B1 (3.5) BS15 CLA N/A N/A N/A N/A
    454775 8wql:B1 (3.5) BS16 CLA N/A N/A N/A N/A
    454776 8wql:BD (3.5) BS01 CLA N/A N/A N/A N/A
    454777 8wql:BD (3.5) BS02 CLA N/A N/A N/A N/A
    454778 8wql:BD (3.5) BS03 CLA N/A N/A N/A N/A
    454779 8wql:BD (3.5) BS04 CLA N/A N/A N/A N/A
    454780 8wql:BD (3.5) BS05 CLA N/A N/A N/A N/A
    454781 8wql:BD (3.5) BS06 CLA N/A N/A N/A N/A
    454782 8wql:BD (3.5) BS07 CLA N/A N/A N/A N/A
    454783 8wql:BD (3.5) BS08 CLA N/A N/A N/A N/A
    454784 8wql:BD (3.5) BS09 CLA N/A N/A N/A N/A
    454785 8wql:BD (3.5) BS10 CLA N/A N/A N/A N/A
    454786 8wql:BD (3.5) BS11 CLA N/A N/A N/A N/A
    454787 8wql:BD (3.5) BS12 CLA N/A N/A N/A N/A
    454788 8wql:BD (3.5) BS13 CLA N/A N/A N/A N/A
    454789 8wql:BD (3.5) BS14 CLA N/A N/A N/A N/A
    454790 8wql:BD (3.5) BS15 CLA N/A N/A N/A N/A
    454791 8wql:BD (3.5) BS16 CLA N/A N/A N/A N/A
    454792 8wql:BE (3.5) BS01 CLA N/A N/A N/A N/A
    454793 8wql:BE (3.5) BS02 CLA N/A N/A N/A N/A
    454794 8wql:BE (3.5) BS03 CLA N/A N/A N/A N/A
    454795 8wql:BE (3.5) BS04 CLA N/A N/A N/A N/A
    454796 8wql:BE (3.5) BS05 CLA N/A N/A N/A N/A
    454797 8wql:BE (3.5) BS06 CLA N/A N/A N/A N/A
    454798 8wql:BE (3.5) BS07 CLA N/A N/A N/A N/A
    454799 8wql:BE (3.5) BS08 CLA N/A N/A N/A N/A
    454800 8wql:BE (3.5) BS09 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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