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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    452801 8wgh:B (2.4) BS21 CLA N/A GO:0000287 ... G9IB61 39060282
    452802 8wgh:B (2.4) BS22 CLA N/A GO:0000287 ... G9IB61 39060282
    452803 8wgh:B (2.4) BS23 CLA N/A GO:0000287 ... G9IB61 39060282
    452804 8wgh:B (2.4) BS24 CLA N/A GO:0000287 ... G9IB61 39060282
    452805 8wgh:B (2.4) BS25 CLA N/A GO:0000287 ... G9IB61 39060282
    452806 8wgh:B (2.4) BS26 CLA N/A GO:0000287 ... G9IB61 39060282
    452807 8wgh:B (2.4) BS27 CLA N/A GO:0000287 ... G9IB61 39060282
    452808 8wgh:B (2.4) BS28 CLA N/A GO:0000287 ... G9IB61 39060282
    452809 8wgh:B (2.4) BS29 CLA N/A GO:0000287 ... G9IB61 39060282
    452810 8wgh:B (2.4) BS30 CLA N/A GO:0000287 ... G9IB61 39060282
    452811 8wgh:B (2.4) BS31 CLA N/A GO:0000287 ... G9IB61 39060282
    452812 8wgh:B (2.4) BS32 CLA N/A GO:0000287 ... G9IB61 39060282
    452813 8wgh:B (2.4) BS33 CLA N/A GO:0000287 ... G9IB61 39060282
    452814 8wgh:B (2.4) BS34 CLA N/A GO:0000287 ... G9IB61 39060282
    452815 8wgh:B (2.4) BS35 CLA N/A GO:0000287 ... G9IB61 39060282
    452816 8wgh:B (2.4) BS36 CLA N/A GO:0000287 ... G9IB61 39060282
    452817 8wgh:B (2.4) BS37 CLA N/A GO:0000287 ... G9IB61 39060282
    452818 8wgh:B (2.4) BS38 CLA N/A GO:0000287 ... G9IB61 39060282
    452819 8wgh:B (2.4) BS39 CLA N/A GO:0000287 ... G9IB61 39060282
    452820 8wgh:B (2.4) BS40 CLA N/A GO:0000287 ... G9IB61 39060282
    452821 8wgh:B (2.4) BS41 CLA N/A GO:0000287 ... G9IB61 39060282
    452822 8wgh:B (2.4) BS42 CLA N/A GO:0000287 ... G9IB61 39060282
    452823 8wgh:B (2.4) BS43 CLA N/A GO:0000287 ... G9IB61 39060282
    452824 8wgh:B (2.4) BS44 CLA N/A GO:0000287 ... G9IB61 39060282
    452825 8wgh:B (2.4) BS45 CLA N/A GO:0000287 ... G9IB61 39060282
    452826 8wgh:B (2.4) BS46 CLA N/A GO:0000287 ... G9IB61 39060282
    452827 8wgh:B (2.4) BS47 PQN N/A GO:0000287 ... G9IB61 39060282
    452828 8wgh:B (2.4) BS48 CLA N/A GO:0000287 ... G9IB61 39060282
    452829 8wgh:C (2.4) BS01 SF4 N/A GO:0009055 ... A4QJG7 39060282
    452830 8wgh:C (2.4) BS02 SF4 N/A GO:0009055 ... A4QJG7 39060282
    452831 8wgh:F (2.4) BS01 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452832 8wgh:F (2.4) BS02 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452833 8wgh:F (2.4) BS03 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452834 8wgh:F (2.4) BS04 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452835 8wgh:F (2.4) BS05 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452836 8wgh:F (2.4) BS06 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452837 8wgh:F (2.4) BS07 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452838 8wgh:F (2.4) BS08 CLA N/A GO:0003729 ... Q9SHE8 39060282
    452839 8wgh:G (2.4) BS01 CLA N/A N/A N/A 39060282
    452840 8wgh:G (2.4) BS02 CLA N/A N/A N/A 39060282
    452841 8wgh:G (2.4) BS03 CLA N/A N/A N/A 39060282
    452842 8wgh:G (2.4) BS04 CLA N/A N/A N/A 39060282
    452843 8wgh:G (2.4) BS05 CLA N/A N/A N/A 39060282
    452844 8wgh:H (2.4) BS02 CLA N/A N/A N/A 39060282
    452845 8wgh:H (2.4) BS03 CLA N/A N/A N/A 39060282
    452846 8wgh:H (2.4) BS04 CLA N/A N/A N/A 39060282
    452847 8wgh:J (2.4) BS01 CLA N/A GO:0009507 ... Q3C1K9 39060282
    452848 8wgh:J (2.4) BS02 CLA N/A GO:0009507 ... Q3C1K9 39060282
    452849 8wgh:J (2.4) BS03 CLA N/A GO:0009507 ... Q3C1K9 39060282
    452850 8wgh:J (2.4) BS04 CLA N/A GO:0009507 ... Q3C1K9 39060282
    452851 8wgh:J (2.4) BS05 CLA N/A GO:0009507 ... Q3C1K9 39060282
    452852 8wgh:K (2.4) BS01 CLA N/A N/A N/A 39060282
    452853 8wgh:K (2.4) BS02 CLA N/A N/A N/A 39060282
    452854 8wgh:K (2.4) BS03 CLA N/A N/A N/A 39060282
    452855 8wgh:K (2.4) BS04 CLA N/A N/A N/A 39060282
    452856 8wgh:K (2.4) BS05 CLA N/A N/A N/A 39060282
    452857 8wgh:L (2.4) BS02 CLA N/A N/A N/A 39060282
    452858 8wgh:L (2.4) BS03 CLA N/A N/A N/A 39060282
    452859 8wgh:L (2.4) BS04 CLA N/A N/A N/A 39060282
    452860 8wgh:L (2.4) BS05 CLA N/A N/A N/A 39060282
    452861 8wgh:L (2.4) BS06 CLA N/A N/A N/A 39060282
    452862 8wgh:L (2.4) BS07 CLA N/A N/A N/A 39060282
    452863 8wgh:L (2.4) BS08 CLA N/A N/A N/A 39060282
    452864 8wgh:L (2.4) BS09 CLA N/A N/A N/A 39060282
    452865 8wgh:N (2.4) BS01 CLA N/A N/A N/A 39060282
    452866 8wgh:O (2.4) BS01 CLA N/A N/A N/A 39060282
    452867 8wgh:O (2.4) BS02 CLA N/A N/A N/A 39060282
    452868 8wgh:O (2.4) BS03 CLA N/A N/A N/A 39060282
    452869 8wgh:O (2.4) BS04 CLA N/A N/A N/A 39060282
    452870 8wgh:O (2.4) BS05 CLA N/A N/A N/A 39060282
    452871 8wgm:A (2.15) BS01 NDP N/A N/A A7UD81 39250850
    452872 8wgm:A (2.15) BS02 UMP N/A N/A A7UD81 39250850
    452873 8wgm:A (2.15) BS03 WCQ N/A N/A A7UD81 39250850
    452874 8wgm:A (2.15) BS04 UMP N/A N/A A7UD81 39250850
    452875 8wgm:B (2.15) BS01 UMP N/A N/A A7UD81 39250850
    452876 8wgm:B (2.15) BS02 NDP N/A N/A A7UD81 39250850
    452877 8wgm:B (2.15) BS03 UMP N/A N/A A7UD81 39250850
    452878 8wgm:B (2.15) BS04 WCQ N/A N/A A7UD81 39250850
    452879 8wgn:A (2.0) BS01 NDP N/A N/A P00374 39250850
    452880 8wgn:A (2.0) BS02 WCQ N/A N/A P00374 39250850
    452881 8wgo:A (3.7) BS02 GSP N/A N/A A0A2U3S0J5 39154050
    452882 8wgo:A (3.7) BS03 PO4 N/A N/A A0A2U3S0J5 39154050
    452883 8wgo:B (3.7) BS01 PO4 N/A N/A A0A2U3S0J5 39154050
    452884 8wgr:A (2.75) BS01 DSM N/A GO:0003779 ... P23975 39048818
    452885 8wgr:A (2.75) BS02 DSM N/A GO:0003779 ... P23975 39048818
    452886 8wgs:A (1.801) BS01 WGH ? N/A P02766 38670538
    452887 8wgs:B (1.801) BS01 WGH ? N/A P02766 38670538
    452888 8wgt:A (1.696) BS01 WGJ ? N/A P02766 38670538
    452889 8wgt:B (1.696) BS01 WGJ ? N/A P02766 38670538
    452890 8wgu:A (1.508) BS01 WH0 ? N/A P02766 38670538
    452891 8wgu:B (1.508) BS01 WH0 ? N/A P02766 38670538
    452892 8wgx:A (3.47) BS01 LNR N/A GO:0003779 ... P23975 39048818
    452893 8wgx:A (3.47) BS02 LNR N/A GO:0003779 ... P23975 39048818
    452894 8wh6:A (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    452895 8wh6:B (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    452896 8wh6:C (3.27) BS02 ADP N/A N/A Q5IXS3 39167653
    452897 8wh6:D (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    452898 8wh8:K (3.6) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    452899 8wh9:K (3.31) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    452900 8wha:K (4.05) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    452901 8wha:L (4.05) BS03 BEF 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    452902 8wha:L (4.05) BS04 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    452903 8whg:B (2.71) BS01 NAP N/A N/A D9X416 N/A
    452904 8whg:E (2.71) BS01 NAP N/A N/A D9X416 N/A
    452905 8whg:F (2.71) BS01 NAP N/A N/A D9X416 N/A
    452906 8who:A (1.892) BS02 WHO N/A N/A P93836 N/A
    452907 8whp:A (1.919) BS02 WI0 N/A N/A P93836 N/A
    452908 8whq:A (1.695) BS02 WI9 N/A N/A P93836 N/A
    452909 8wi6:A (1.916) BS02 N1K N/A N/A P93836 N/A
    452910 8wih:A (2.44) BS01 ATP N/A N/A N/A 39014102
    452911 8wih:B (2.44) BS01 ATP N/A N/A N/A 39014102
    452912 8wii:A (2.98) BS01 WE3 N/A N/A N/A 39014102
    452913 8wii:B (2.98) BS01 WE3 N/A N/A N/A 39014102
    452914 8wij:A (3.08) BS01 X5V N/A N/A N/A 39014102
    452915 8wij:B (3.08) BS01 X5V N/A N/A N/A 39014102
    452916 8wik:A (2.0) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    452917 8wik:A (2.0) BS02 NAD 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    452918 8wiu:A (1.4) BS01 WPR ? N/A O60885 38142510
    452919 8wiv:D (3.41) BS02 AGS N/A N/A N/A N/A
    452920 8wiv:L (3.41) BS01 AGS N/A N/A N/A N/A
    452921 8wiv:M (3.41) BS01 AGS N/A N/A N/A N/A
    452922 8wiv:O (3.41) BS01 AGS N/A N/A N/A N/A
    452923 8wix:A (2.29) BS01 HEM N/A N/A P01999 39090102
    452924 8wix:B (2.29) BS01 HEM N/A N/A P02130 39090102
    452925 8wiy:A (2.31) BS01 HEM N/A N/A P01999 39090102
    452926 8wiy:A (2.31) BS02 OXY N/A N/A P01999 39090102
    452927 8wiy:B (2.31) BS01 HEM N/A N/A P02130 39090102
    452928 8wiy:B (2.31) BS02 OXY N/A N/A P02130 39090102
    452929 8wiz:A (2.2) BS01 HEM N/A N/A P01999 39090102
    452930 8wiz:B (2.2) BS01 HEM N/A N/A P02130 39090102
    452931 8wiz:B (2.2) BS02 BCT N/A N/A P02130 39090102
    452932 8wj0:A (2.24) BS01 HEM N/A N/A P69905 39090102
    452933 8wj0:B (2.24) BS01 HEM N/A N/A P68871 39090102
    452934 8wj1:A (2.27) BS01 HEM N/A N/A P69905 39090102
    452935 8wj1:A (2.27) BS02 OXY N/A N/A P69905 39090102
    452936 8wj1:B (2.27) BS01 HEM N/A N/A P68871 39090102
    452937 8wj1:B (2.27) BS02 OXY N/A N/A P68871 39090102
    452938 8wj2:A (2.35) BS01 HEM N/A N/A P69905 39090102
    452939 8wj2:B (2.35) BS01 HEM N/A N/A P68871 39090102
    452940 8wj3:L (3.36) BS01 AGS N/A N/A N/A N/A
    452941 8wj3:M (3.36) BS01 AGS N/A N/A N/A N/A
    452942 8wj3:O (3.36) BS01 AGS N/A N/A N/A N/A
    452943 8wjc:A (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    452944 8wjc:B (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    452945 8wjc:C (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    452946 8wjc:D (2.11) BS01 4BW N/A N/A A0A447EB45 N/A
    452947 8wjd:A (1.71) BS01 C2E N/A N/A N/A N/A
    452948 8wjy:A (1.88) BS01 W9X 2.7.11.1 GO:0004672 ... Q99640 38146659
    452949 8wk0:D (3.34) BS01 AGS N/A N/A N/A N/A
    452950 8wk0:L (3.34) BS01 AGS N/A N/A N/A N/A
    452951 8wk0:M (3.34) BS01 AGS N/A N/A N/A N/A
    452952 8wk0:N (3.34) BS01 AGS N/A N/A N/A N/A
    452953 8wk0:O (3.34) BS01 AGS N/A N/A N/A N/A
    452954 8wkj:A (1.7) BS01 PLP 2.6.1.- GO:0003824 ... A0A130QXX8 37984176
    452955 8wkl:A (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452956 8wkl:B (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452957 8wkl:C (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452958 8wkl:D (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452959 8wkl:E (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452960 8wkl:F (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452961 8wkl:G (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452962 8wkl:H (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    452963 8wko:A (2.91) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    452964 8wko:A (2.91) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    452965 8wko:B (2.91) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    452966 8wko:B (2.91) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    452967 8wkp:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 38599770
    452968 8wkp:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 38599770
    452969 8wkp:AS2P (4.62) BS04 UNK ? GO:0003735 ... P39478 38599770
    452970 8wkp:AS2P (4.62) BS05 UNK ? GO:0003735 ... P39478 38599770
    452971 8wkp:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 38599770
    452972 8wkp:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 38599770
    452973 8wkr:A (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    452974 8wkr:A (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    452975 8wkr:B (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    452976 8wkr:B (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    452977 8wkr:C (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    452978 8wkr:C (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    452979 8wkr:D (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    452980 8wkr:D (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    452981 8wku:B (3.5) BS01 MAN N/A N/A A0AAE8ZFM2 38877169
    452982 8wku:B (3.5) BS02 MAN N/A N/A A0AAE8ZFM2 38877169
    452983 8wl7:A (1.74) BS01 ALL ? GO:0030246 ... A0A9W3L9M6 37820454
    452984 8wl9:A (1.93) BS01 RIP ? GO:0030246 ... A0A9W3L9M6 37820454
    452985 8wlb:A (1.71) BS01 WEB ? GO:0030246 ... A0A9W3L9M6 37820454
    452986 8wlk:A (3.37) BS01 EBZ ? GO:0001975 ... Q05940 N/A
    452987 8wll:A (3.74) BS01 YHR ? GO:0001975 ... Q05940 N/A
    452988 8wlm:A (3.57) BS01 SRO ? GO:0001975 ... Q05940 N/A
    452989 8wlv:A (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    452990 8wlv:B (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    452991 8wlv:C (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    452992 8wlv:D (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    452993 8wlw:A (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    452994 8wlw:B (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    452995 8wlw:C (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    452996 8wlw:D (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    452997 8wm0:A (2.8) BS02 ADN 2.7.11.1 GO:0004672 ... Q9UKE5 38491946
    452998 8wm3:A (3.34) BS01 TGI N/A N/A Q9NP91 39159813
    452999 8wm3:C (3.34) BS01 TGI N/A N/A Q9NP91 39159813
    453000 8wm6:A (2.7) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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