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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    452601 8wey:J (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    452602 8wey:J (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    452603 8wey:J (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    452604 8wey:J (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    452605 8wey:J (1.92) BS05 5X6 N/A GO:0009522 ... N/A 38442179
    452606 8wey:K (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    452607 8wey:K (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    452608 8wey:K (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    452609 8wey:K (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    452610 8wey:K (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    452611 8wey:L (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    452612 8wey:L (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    452613 8wey:L (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    452614 8wey:L (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    452615 8wey:L (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    452616 8wey:L (1.92) BS06 CLA N/A GO:0009522 ... N/A 38442179
    452617 8wey:O (1.92) BS01 CLA N/A N/A N/A 38442179
    452618 8wey:O (1.92) BS02 CLA N/A N/A N/A 38442179
    452619 8wey:O (1.92) BS03 CLA N/A N/A N/A 38442179
    452620 8wey:O (1.92) BS04 CLA N/A N/A N/A 38442179
    452621 8wf5:A (1.72) BS01 WC5 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38780472
    452622 8wfi:A (2.58) BS01 GLY ? GO:0005283 ... P48067 38513663
    452623 8wfj:A (3.35) BS01 W5F ? GO:0005283 ... P48067 38513663
    452624 8wfk:A (3.22) BS01 W5O ? GO:0005283 ... P48067 38513663
    452625 8wfl:A (3.03) BS01 W5X ? GO:0005283 ... P48067 38513663
    452626 8wfq:A (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452627 8wfq:B (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452628 8wfq:C (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452629 8wfq:D (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452630 8wfq:E (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452631 8wfq:F (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452632 8wfq:G (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452633 8wfq:H (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    452634 8wfy:A (2.6) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 N/A
    452635 8wfy:B (2.6) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 N/A
    452636 8wg0:A (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452637 8wg0:B (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452638 8wg0:C (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452639 8wg0:C (1.95) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452640 8wg0:D (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452641 8wg1:A (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452642 8wg1:A (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452643 8wg1:B (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452644 8wg1:B (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452645 8wg1:C (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452646 8wg1:C (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452647 8wg1:D (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452648 8wg1:D (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452649 8wg2:A (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452650 8wg2:A (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452651 8wg2:A (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452652 8wg2:B (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452653 8wg2:B (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452654 8wg2:C (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452655 8wg2:C (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452656 8wg2:D (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452657 8wg2:D (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452658 8wg2:D (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    452659 8wg3:A (3.4) BS01 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    452660 8wg3:A (3.4) BS02 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    452661 8wg3:A (3.4) BS03 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    452662 8wg3:A (3.4) BS04 LBN N/A N/A P42212
    Q3TWI9    		 N/A
    452663 8wg4:A (3.5) BS01 LBN N/A N/A P42212
    Q3TWI9    		 N/A
    452664 8wg4:A (3.5) BS02 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    452665 8wg4:A (3.5) BS03 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    452666 8wg4:A (3.5) BS04 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    452667 8wgf:A (1.85) BS01 ANP 2.7.11.24 GO:0004672 ... P53779 N/A
    452668 8wgh:1 (2.4) BS01 CHL N/A N/A N/A 39060282
    452669 8wgh:1 (2.4) BS02 CLA N/A N/A N/A 39060282
    452670 8wgh:1 (2.4) BS03 CLA N/A N/A N/A 39060282
    452671 8wgh:1 (2.4) BS04 CLA N/A N/A N/A 39060282
    452672 8wgh:1 (2.4) BS05 CLA N/A N/A N/A 39060282
    452673 8wgh:1 (2.4) BS06 CHL N/A N/A N/A 39060282
    452674 8wgh:1 (2.4) BS07 CLA N/A N/A N/A 39060282
    452675 8wgh:1 (2.4) BS08 CLA N/A N/A N/A 39060282
    452676 8wgh:1 (2.4) BS09 CLA N/A N/A N/A 39060282
    452677 8wgh:1 (2.4) BS10 CLA N/A N/A N/A 39060282
    452678 8wgh:1 (2.4) BS11 CLA N/A N/A N/A 39060282
    452679 8wgh:1 (2.4) BS12 CLA N/A N/A N/A 39060282
    452680 8wgh:1 (2.4) BS13 CLA N/A N/A N/A 39060282
    452681 8wgh:1 (2.4) BS14 CLA N/A N/A N/A 39060282
    452682 8wgh:2 (2.4) BS01 CHL N/A N/A N/A 39060282
    452683 8wgh:2 (2.4) BS02 CLA N/A N/A N/A 39060282
    452684 8wgh:2 (2.4) BS03 CLA N/A N/A N/A 39060282
    452685 8wgh:2 (2.4) BS04 CLA N/A N/A N/A 39060282
    452686 8wgh:2 (2.4) BS05 CHL N/A N/A N/A 39060282
    452687 8wgh:2 (2.4) BS06 CHL N/A N/A N/A 39060282
    452688 8wgh:2 (2.4) BS07 CHL N/A N/A N/A 39060282
    452689 8wgh:2 (2.4) BS08 CLA N/A N/A N/A 39060282
    452690 8wgh:2 (2.4) BS09 CLA N/A N/A N/A 39060282
    452691 8wgh:2 (2.4) BS10 CLA N/A N/A N/A 39060282
    452692 8wgh:2 (2.4) BS11 CLA N/A N/A N/A 39060282
    452693 8wgh:2 (2.4) BS12 CLA N/A N/A N/A 39060282
    452694 8wgh:2 (2.4) BS13 CLA N/A N/A N/A 39060282
    452695 8wgh:2 (2.4) BS14 CHL N/A N/A N/A 39060282
    452696 8wgh:2 (2.4) BS15 CLA N/A N/A N/A 39060282
    452697 8wgh:2 (2.4) BS16 CLA N/A N/A N/A 39060282
    452698 8wgh:3 (2.4) BS01 CHL N/A N/A N/A 39060282
    452699 8wgh:3 (2.4) BS02 CLA N/A N/A N/A 39060282
    452700 8wgh:3 (2.4) BS03 CLA N/A N/A N/A 39060282
    452701 8wgh:3 (2.4) BS04 CLA N/A N/A N/A 39060282
    452702 8wgh:3 (2.4) BS05 CLA N/A N/A N/A 39060282
    452703 8wgh:3 (2.4) BS06 CLA N/A N/A N/A 39060282
    452704 8wgh:3 (2.4) BS07 CHL N/A N/A N/A 39060282
    452705 8wgh:3 (2.4) BS08 CLA N/A N/A N/A 39060282
    452706 8wgh:3 (2.4) BS09 CLA N/A N/A N/A 39060282
    452707 8wgh:3 (2.4) BS10 CLA N/A N/A N/A 39060282
    452708 8wgh:3 (2.4) BS11 CLA N/A N/A N/A 39060282
    452709 8wgh:3 (2.4) BS12 CLA N/A N/A N/A 39060282
    452710 8wgh:3 (2.4) BS13 CLA N/A N/A N/A 39060282
    452711 8wgh:3 (2.4) BS14 CLA N/A N/A N/A 39060282
    452712 8wgh:3 (2.4) BS15 CLA N/A N/A N/A 39060282
    452713 8wgh:3 (2.4) BS16 CLA N/A N/A N/A 39060282
    452714 8wgh:3 (2.4) BS17 CLA N/A N/A N/A 39060282
    452715 8wgh:4 (2.4) BS01 CHL N/A N/A N/A 39060282
    452716 8wgh:4 (2.4) BS02 CLA N/A N/A N/A 39060282
    452717 8wgh:4 (2.4) BS03 CLA N/A N/A N/A 39060282
    452718 8wgh:4 (2.4) BS04 CLA N/A N/A N/A 39060282
    452719 8wgh:4 (2.4) BS05 CLA N/A N/A N/A 39060282
    452720 8wgh:4 (2.4) BS06 CLA N/A N/A N/A 39060282
    452721 8wgh:4 (2.4) BS07 CHL N/A N/A N/A 39060282
    452722 8wgh:4 (2.4) BS08 CHL N/A N/A N/A 39060282
    452723 8wgh:4 (2.4) BS09 CHL N/A N/A N/A 39060282
    452724 8wgh:4 (2.4) BS10 CLA N/A N/A N/A 39060282
    452725 8wgh:4 (2.4) BS11 CLA N/A N/A N/A 39060282
    452726 8wgh:4 (2.4) BS12 CLA N/A N/A N/A 39060282
    452727 8wgh:4 (2.4) BS13 CLA N/A N/A N/A 39060282
    452728 8wgh:4 (2.4) BS14 CLA N/A N/A N/A 39060282
    452729 8wgh:4 (2.4) BS15 CLA N/A N/A N/A 39060282
    452730 8wgh:4 (2.4) BS16 CLA N/A N/A N/A 39060282
    452731 8wgh:4 (2.4) BS17 CHL N/A N/A N/A 39060282
    452732 8wgh:A (2.4) BS01 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452733 8wgh:A (2.4) BS02 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452734 8wgh:A (2.4) BS03 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452735 8wgh:A (2.4) BS04 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452736 8wgh:A (2.4) BS05 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452737 8wgh:A (2.4) BS06 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452738 8wgh:A (2.4) BS07 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452739 8wgh:A (2.4) BS08 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452740 8wgh:A (2.4) BS09 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452741 8wgh:A (2.4) BS10 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452742 8wgh:A (2.4) BS11 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452743 8wgh:A (2.4) BS12 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452744 8wgh:A (2.4) BS13 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452745 8wgh:A (2.4) BS14 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452746 8wgh:A (2.4) BS15 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452747 8wgh:A (2.4) BS16 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452748 8wgh:A (2.4) BS17 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452749 8wgh:A (2.4) BS18 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452750 8wgh:A (2.4) BS19 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452751 8wgh:A (2.4) BS20 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452752 8wgh:A (2.4) BS21 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452753 8wgh:A (2.4) BS22 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452754 8wgh:A (2.4) BS23 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452755 8wgh:A (2.4) BS24 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452756 8wgh:A (2.4) BS25 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452757 8wgh:A (2.4) BS26 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452758 8wgh:A (2.4) BS27 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452759 8wgh:A (2.4) BS28 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452760 8wgh:A (2.4) BS29 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452761 8wgh:A (2.4) BS30 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452762 8wgh:A (2.4) BS31 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452763 8wgh:A (2.4) BS32 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452764 8wgh:A (2.4) BS33 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452765 8wgh:A (2.4) BS34 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452766 8wgh:A (2.4) BS35 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452767 8wgh:A (2.4) BS36 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452768 8wgh:A (2.4) BS37 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452769 8wgh:A (2.4) BS38 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452770 8wgh:A (2.4) BS39 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452771 8wgh:A (2.4) BS40 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452772 8wgh:A (2.4) BS41 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452773 8wgh:A (2.4) BS42 PQN N/A GO:0000287 ... A0A8A0WPY6 39060282
    452774 8wgh:A (2.4) BS43 SF4 N/A GO:0000287 ... A0A8A0WPY6 39060282
    452775 8wgh:A (2.4) BS44 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452776 8wgh:A (2.4) BS45 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452777 8wgh:A (2.4) BS46 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452778 8wgh:A (2.4) BS47 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452779 8wgh:A (2.4) BS48 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452780 8wgh:A (2.4) BS49 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452781 8wgh:A (2.4) BS50 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    452782 8wgh:B (2.4) BS02 CLA N/A GO:0000287 ... G9IB61 39060282
    452783 8wgh:B (2.4) BS03 CLA N/A GO:0000287 ... G9IB61 39060282
    452784 8wgh:B (2.4) BS04 CLA N/A GO:0000287 ... G9IB61 39060282
    452785 8wgh:B (2.4) BS05 CLA N/A GO:0000287 ... G9IB61 39060282
    452786 8wgh:B (2.4) BS06 CLA N/A GO:0000287 ... G9IB61 39060282
    452787 8wgh:B (2.4) BS07 SF4 N/A GO:0000287 ... G9IB61 39060282
    452788 8wgh:B (2.4) BS08 CLA N/A GO:0000287 ... G9IB61 39060282
    452789 8wgh:B (2.4) BS09 CLA N/A GO:0000287 ... G9IB61 39060282
    452790 8wgh:B (2.4) BS10 CLA N/A GO:0000287 ... G9IB61 39060282
    452791 8wgh:B (2.4) BS11 CLA N/A GO:0000287 ... G9IB61 39060282
    452792 8wgh:B (2.4) BS12 CLA N/A GO:0000287 ... G9IB61 39060282
    452793 8wgh:B (2.4) BS13 CLA N/A GO:0000287 ... G9IB61 39060282
    452794 8wgh:B (2.4) BS14 CLA N/A GO:0000287 ... G9IB61 39060282
    452795 8wgh:B (2.4) BS15 CLA N/A GO:0000287 ... G9IB61 39060282
    452796 8wgh:B (2.4) BS16 CLA N/A GO:0000287 ... G9IB61 39060282
    452797 8wgh:B (2.4) BS17 CLA N/A GO:0000287 ... G9IB61 39060282
    452798 8wgh:B (2.4) BS18 CLA N/A GO:0000287 ... G9IB61 39060282
    452799 8wgh:B (2.4) BS19 CLA N/A GO:0000287 ... G9IB61 39060282
    452800 8wgh:B (2.4) BS20 CLA N/A GO:0000287 ... G9IB61 39060282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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