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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    452401 8wes:A (1.45) BS02 BCT N/A N/A P00918 N/A
    452402 8wev:A (2.29) BS01 AMP N/A N/A A0A3N2H3K2 N/A
    452403 8wev:B (2.29) BS01 AMP N/A N/A A0A3N2H3K2 N/A
    452404 8wew:A (2.5) BS01 RET N/A N/A Q18DH5 N/A
    452405 8wew:B (2.5) BS01 RET N/A N/A Q18DH5 N/A
    452406 8wey:1 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    452407 8wey:1 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    452408 8wey:1 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    452409 8wey:1 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    452410 8wey:1 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    452411 8wey:1 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    452412 8wey:1 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    452413 8wey:1 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    452414 8wey:1 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    452415 8wey:1 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    452416 8wey:1 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    452417 8wey:1 (1.92) BS12 5X6 N/A GO:0009765 ... N/A 38442179
    452418 8wey:1 (1.92) BS13 5X6 N/A GO:0009765 ... N/A 38442179
    452419 8wey:1 (1.92) BS14 5X6 N/A GO:0009765 ... N/A 38442179
    452420 8wey:1 (1.92) BS15 5X6 N/A GO:0009765 ... N/A 38442179
    452421 8wey:1 (1.92) BS16 5X6 N/A GO:0009765 ... N/A 38442179
    452422 8wey:2 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    452423 8wey:2 (1.92) BS02 5X6 N/A GO:0009765 ... N/A 38442179
    452424 8wey:2 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    452425 8wey:2 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    452426 8wey:2 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    452427 8wey:2 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    452428 8wey:2 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    452429 8wey:2 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    452430 8wey:2 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    452431 8wey:2 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    452432 8wey:2 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    452433 8wey:2 (1.92) BS12 CLA N/A GO:0009765 ... N/A 38442179
    452434 8wey:2 (1.92) BS13 CLA N/A GO:0009765 ... N/A 38442179
    452435 8wey:2 (1.92) BS14 CLA N/A GO:0009765 ... N/A 38442179
    452436 8wey:2 (1.92) BS15 5X6 N/A GO:0009765 ... N/A 38442179
    452437 8wey:2 (1.92) BS16 5X6 N/A GO:0009765 ... N/A 38442179
    452438 8wey:2 (1.92) BS17 5X6 N/A GO:0009765 ... N/A 38442179
    452439 8wey:2 (1.92) BS18 5X6 N/A GO:0009765 ... N/A 38442179
    452440 8wey:2 (1.92) BS19 5X6 N/A GO:0009765 ... N/A 38442179
    452441 8wey:3 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    452442 8wey:3 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    452443 8wey:3 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    452444 8wey:3 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    452445 8wey:3 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    452446 8wey:3 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    452447 8wey:3 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    452448 8wey:3 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    452449 8wey:3 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    452450 8wey:3 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    452451 8wey:3 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    452452 8wey:3 (1.92) BS12 5X6 N/A GO:0009765 ... N/A 38442179
    452453 8wey:3 (1.92) BS13 5X6 N/A GO:0009765 ... N/A 38442179
    452454 8wey:3 (1.92) BS14 5X6 N/A GO:0009765 ... N/A 38442179
    452455 8wey:4 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    452456 8wey:4 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    452457 8wey:4 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    452458 8wey:4 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    452459 8wey:4 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    452460 8wey:4 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    452461 8wey:4 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    452462 8wey:4 (1.92) BS08 5X6 N/A GO:0009765 ... N/A 38442179
    452463 8wey:4 (1.92) BS09 5X6 N/A GO:0009765 ... N/A 38442179
    452464 8wey:4 (1.92) BS10 5X6 N/A GO:0009765 ... N/A 38442179
    452465 8wey:5 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    452466 8wey:5 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    452467 8wey:5 (1.92) BS03 5X6 N/A GO:0009765 ... N/A 38442179
    452468 8wey:5 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    452469 8wey:5 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    452470 8wey:5 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    452471 8wey:5 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    452472 8wey:5 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    452473 8wey:5 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    452474 8wey:5 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    452475 8wey:5 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    452476 8wey:5 (1.92) BS12 CLA N/A GO:0009765 ... N/A 38442179
    452477 8wey:5 (1.92) BS13 CLA N/A GO:0009765 ... N/A 38442179
    452478 8wey:5 (1.92) BS14 CLA N/A GO:0009765 ... N/A 38442179
    452479 8wey:5 (1.92) BS15 CLA N/A GO:0009765 ... N/A 38442179
    452480 8wey:5 (1.92) BS16 5X6 N/A GO:0009765 ... N/A 38442179
    452481 8wey:5 (1.92) BS17 5X6 N/A GO:0009765 ... N/A 38442179
    452482 8wey:5 (1.92) BS18 5X6 N/A GO:0009765 ... N/A 38442179
    452483 8wey:5 (1.92) BS19 5X6 N/A GO:0009765 ... N/A 38442179
    452484 8wey:A (1.92) BS01 CL0 N/A GO:0009579 ... N/A 38442179
    452485 8wey:A (1.92) BS02 CLA N/A GO:0009579 ... N/A 38442179
    452486 8wey:A (1.92) BS03 CLA N/A GO:0009579 ... N/A 38442179
    452487 8wey:A (1.92) BS04 CLA N/A GO:0009579 ... N/A 38442179
    452488 8wey:A (1.92) BS05 CLA N/A GO:0009579 ... N/A 38442179
    452489 8wey:A (1.92) BS06 CLA N/A GO:0009579 ... N/A 38442179
    452490 8wey:A (1.92) BS07 CLA N/A GO:0009579 ... N/A 38442179
    452491 8wey:A (1.92) BS08 CLA N/A GO:0009579 ... N/A 38442179
    452492 8wey:A (1.92) BS09 CLA N/A GO:0009579 ... N/A 38442179
    452493 8wey:A (1.92) BS10 CLA N/A GO:0009579 ... N/A 38442179
    452494 8wey:A (1.92) BS11 CLA N/A GO:0009579 ... N/A 38442179
    452495 8wey:A (1.92) BS12 CLA N/A GO:0009579 ... N/A 38442179
    452496 8wey:A (1.92) BS13 CLA N/A GO:0009579 ... N/A 38442179
    452497 8wey:A (1.92) BS14 CLA N/A GO:0009579 ... N/A 38442179
    452498 8wey:A (1.92) BS15 CLA N/A GO:0009579 ... N/A 38442179
    452499 8wey:A (1.92) BS16 CLA N/A GO:0009579 ... N/A 38442179
    452500 8wey:A (1.92) BS17 CLA N/A GO:0009579 ... N/A 38442179
    452501 8wey:A (1.92) BS18 CLA N/A GO:0009579 ... N/A 38442179
    452502 8wey:A (1.92) BS19 CLA N/A GO:0009579 ... N/A 38442179
    452503 8wey:A (1.92) BS20 CLA N/A GO:0009579 ... N/A 38442179
    452504 8wey:A (1.92) BS21 CLA N/A GO:0009579 ... N/A 38442179
    452505 8wey:A (1.92) BS22 CLA N/A GO:0009579 ... N/A 38442179
    452506 8wey:A (1.92) BS23 CLA N/A GO:0009579 ... N/A 38442179
    452507 8wey:A (1.92) BS24 CLA N/A GO:0009579 ... N/A 38442179
    452508 8wey:A (1.92) BS25 CLA N/A GO:0009579 ... N/A 38442179
    452509 8wey:A (1.92) BS26 CLA N/A GO:0009579 ... N/A 38442179
    452510 8wey:A (1.92) BS27 CLA N/A GO:0009579 ... N/A 38442179
    452511 8wey:A (1.92) BS28 CLA N/A GO:0009579 ... N/A 38442179
    452512 8wey:A (1.92) BS29 CLA N/A GO:0009579 ... N/A 38442179
    452513 8wey:A (1.92) BS30 CLA N/A GO:0009579 ... N/A 38442179
    452514 8wey:A (1.92) BS31 CLA N/A GO:0009579 ... N/A 38442179
    452515 8wey:A (1.92) BS32 CLA N/A GO:0009579 ... N/A 38442179
    452516 8wey:A (1.92) BS33 CLA N/A GO:0009579 ... N/A 38442179
    452517 8wey:A (1.92) BS34 CLA N/A GO:0009579 ... N/A 38442179
    452518 8wey:A (1.92) BS35 CLA N/A GO:0009579 ... N/A 38442179
    452519 8wey:A (1.92) BS36 CLA N/A GO:0009579 ... N/A 38442179
    452520 8wey:A (1.92) BS37 CLA N/A GO:0009579 ... N/A 38442179
    452521 8wey:A (1.92) BS38 CLA N/A GO:0009579 ... N/A 38442179
    452522 8wey:A (1.92) BS39 CLA N/A GO:0009579 ... N/A 38442179
    452523 8wey:A (1.92) BS40 PQN N/A GO:0009579 ... N/A 38442179
    452524 8wey:A (1.92) BS41 SF4 N/A GO:0009579 ... N/A 38442179
    452525 8wey:A (1.92) BS42 CLA N/A GO:0009579 ... N/A 38442179
    452526 8wey:A (1.92) BS43 CLA N/A GO:0009579 ... N/A 38442179
    452527 8wey:A (1.92) BS44 CLA N/A GO:0009579 ... N/A 38442179
    452528 8wey:A (1.92) BS45 CLA N/A GO:0009579 ... N/A 38442179
    452529 8wey:A (1.92) BS46 CLA N/A GO:0009579 ... N/A 38442179
    452530 8wey:A (1.92) BS47 CLA N/A GO:0009579 ... N/A 38442179
    452531 8wey:A (1.92) BS48 CLA N/A GO:0009579 ... N/A 38442179
    452532 8wey:A (1.92) BS49 CLA N/A GO:0009579 ... N/A 38442179
    452533 8wey:A (1.92) BS50 CLA N/A GO:0009579 ... N/A 38442179
    452534 8wey:A (1.92) BS51 CLA N/A GO:0009579 ... N/A 38442179
    452535 8wey:A (1.92) BS52 CLA N/A GO:0009579 ... N/A 38442179
    452536 8wey:A (1.92) BS53 CLA N/A GO:0009579 ... N/A 38442179
    452537 8wey:B (1.92) BS02 CL0 N/A GO:0009522 ... N/A 38442179
    452538 8wey:B (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    452539 8wey:B (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    452540 8wey:B (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    452541 8wey:B (1.92) BS06 SF4 N/A GO:0009522 ... N/A 38442179
    452542 8wey:B (1.92) BS07 CLA N/A GO:0009522 ... N/A 38442179
    452543 8wey:B (1.92) BS08 CLA N/A GO:0009522 ... N/A 38442179
    452544 8wey:B (1.92) BS09 CLA N/A GO:0009522 ... N/A 38442179
    452545 8wey:B (1.92) BS10 CLA N/A GO:0009522 ... N/A 38442179
    452546 8wey:B (1.92) BS11 CLA N/A GO:0009522 ... N/A 38442179
    452547 8wey:B (1.92) BS12 CLA N/A GO:0009522 ... N/A 38442179
    452548 8wey:B (1.92) BS13 CLA N/A GO:0009522 ... N/A 38442179
    452549 8wey:B (1.92) BS14 CLA N/A GO:0009522 ... N/A 38442179
    452550 8wey:B (1.92) BS15 CLA N/A GO:0009522 ... N/A 38442179
    452551 8wey:B (1.92) BS16 CLA N/A GO:0009522 ... N/A 38442179
    452552 8wey:B (1.92) BS17 CLA N/A GO:0009522 ... N/A 38442179
    452553 8wey:B (1.92) BS18 CLA N/A GO:0009522 ... N/A 38442179
    452554 8wey:B (1.92) BS19 CLA N/A GO:0009522 ... N/A 38442179
    452555 8wey:B (1.92) BS20 CLA N/A GO:0009522 ... N/A 38442179
    452556 8wey:B (1.92) BS21 CLA N/A GO:0009522 ... N/A 38442179
    452557 8wey:B (1.92) BS22 CLA N/A GO:0009522 ... N/A 38442179
    452558 8wey:B (1.92) BS23 CLA N/A GO:0009522 ... N/A 38442179
    452559 8wey:B (1.92) BS24 CLA N/A GO:0009522 ... N/A 38442179
    452560 8wey:B (1.92) BS25 CLA N/A GO:0009522 ... N/A 38442179
    452561 8wey:B (1.92) BS26 CLA N/A GO:0009522 ... N/A 38442179
    452562 8wey:B (1.92) BS27 CLA N/A GO:0009522 ... N/A 38442179
    452563 8wey:B (1.92) BS28 CLA N/A GO:0009522 ... N/A 38442179
    452564 8wey:B (1.92) BS29 CLA N/A GO:0009522 ... N/A 38442179
    452565 8wey:B (1.92) BS30 CLA N/A GO:0009522 ... N/A 38442179
    452566 8wey:B (1.92) BS31 CLA N/A GO:0009522 ... N/A 38442179
    452567 8wey:B (1.92) BS32 CLA N/A GO:0009522 ... N/A 38442179
    452568 8wey:B (1.92) BS33 CLA N/A GO:0009522 ... N/A 38442179
    452569 8wey:B (1.92) BS34 CLA N/A GO:0009522 ... N/A 38442179
    452570 8wey:B (1.92) BS35 CLA N/A GO:0009522 ... N/A 38442179
    452571 8wey:B (1.92) BS36 CLA N/A GO:0009522 ... N/A 38442179
    452572 8wey:B (1.92) BS37 CLA N/A GO:0009522 ... N/A 38442179
    452573 8wey:B (1.92) BS38 CLA N/A GO:0009522 ... N/A 38442179
    452574 8wey:B (1.92) BS39 CLA N/A GO:0009522 ... N/A 38442179
    452575 8wey:B (1.92) BS40 CLA N/A GO:0009522 ... N/A 38442179
    452576 8wey:B (1.92) BS41 CLA N/A GO:0009522 ... N/A 38442179
    452577 8wey:B (1.92) BS42 CLA N/A GO:0009522 ... N/A 38442179
    452578 8wey:B (1.92) BS43 CLA N/A GO:0009522 ... N/A 38442179
    452579 8wey:B (1.92) BS44 CLA N/A GO:0009522 ... N/A 38442179
    452580 8wey:B (1.92) BS45 CLA N/A GO:0009522 ... N/A 38442179
    452581 8wey:B (1.92) BS46 CLA N/A GO:0009522 ... N/A 38442179
    452582 8wey:B (1.92) BS47 CLA N/A GO:0009522 ... N/A 38442179
    452583 8wey:B (1.92) BS48 PQN N/A GO:0009522 ... N/A 38442179
    452584 8wey:B (1.92) BS49 CLA N/A GO:0009522 ... N/A 38442179
    452585 8wey:B (1.92) BS50 CLA N/A GO:0009522 ... N/A 38442179
    452586 8wey:B (1.92) BS51 CLA N/A GO:0009522 ... N/A 38442179
    452587 8wey:C (1.92) BS01 SF4 N/A GO:0009055 ... N/A 38442179
    452588 8wey:C (1.92) BS02 SF4 N/A GO:0009055 ... N/A 38442179
    452589 8wey:F (1.92) BS01 CLA N/A GO:0009522 ... N/A 38442179
    452590 8wey:F (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    452591 8wey:F (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    452592 8wey:F (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    452593 8wey:F (1.92) BS05 CLA N/A GO:0009522 ... N/A 38442179
    452594 8wey:F (1.92) BS06 CLA N/A GO:0009522 ... N/A 38442179
    452595 8wey:F (1.92) BS07 CLA N/A GO:0009522 ... N/A 38442179
    452596 8wey:F (1.92) BS08 5X6 N/A GO:0009522 ... N/A 38442179
    452597 8wey:F (1.92) BS09 CLA N/A GO:0009522 ... N/A 38442179
    452598 8wey:I (1.92) BS02 CLA N/A GO:0009522 ... N/A 38442179
    452599 8wey:I (1.92) BS03 CLA N/A GO:0009522 ... N/A 38442179
    452600 8wey:I (1.92) BS04 CLA N/A GO:0009522 ... N/A 38442179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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