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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    451001 8w6h:B (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    451002 8w6h:B (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    451003 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    451004 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    451005 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    451006 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    451007 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    451008 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    451009 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    451010 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    451011 8w6n:B (3.2) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    451012 8w6o:A (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    451013 8w6o:B (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    451014 8w6p:A (1.91) BS01 FUC 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    451015 8w6p:A (1.91) BS02 YA4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    451016 8w6p:B (1.91) BS01 PO4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    451017 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    451018 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    451019 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    451020 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    451021 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    451022 8w6z:A (2.2) BS02 HEM N/A N/A N/A N/A
    451023 8w6z:A (2.2) BS03 R8L N/A N/A N/A N/A
    451024 8w71:A (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    451025 8w71:B (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    451026 8w72:A (3.25) BS01 HEM N/A N/A N/A N/A
    451027 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451028 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451029 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451030 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451031 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451032 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451033 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451034 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451035 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451036 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451037 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451038 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451039 8w7a:B (3.77) BS01 GTP N/A N/A A0A2U3S0J5 39154050
    451040 8w7c:A (3.0) BS01 R89 N/A N/A Q16740 N/A
    451041 8w7c:A (3.0) BS02 R89 N/A N/A Q16740 N/A
    451042 8w7c:B (3.0) BS01 R89 N/A N/A Q16740 N/A
    451043 8w7c:C (3.0) BS01 R89 N/A N/A Q16740 N/A
    451044 8w7c:C (3.0) BS02 R89 N/A N/A Q16740 N/A
    451045 8w7c:D (3.0) BS01 R89 N/A N/A Q16740 N/A
    451046 8w7c:D (3.0) BS02 R89 N/A N/A Q16740 N/A
    451047 8w7c:E (3.0) BS01 R89 N/A N/A Q16740 N/A
    451048 8w7c:F (3.0) BS01 R89 N/A N/A Q16740 N/A
    451049 8w7c:F (3.0) BS02 R89 N/A N/A Q16740 N/A
    451050 8w7c:G (3.0) BS01 R89 N/A N/A Q16740 N/A
    451051 8w7c:G (3.0) BS02 R89 N/A N/A Q16740 N/A
    451052 8w7d:A (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    451053 8w7d:B (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    451054 8w7d:C (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    451055 8w7d:D (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    451056 8w7e:A (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451057 8w7e:A (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451058 8w7e:B (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451059 8w7e:B (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451060 8w7e:C (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451061 8w7e:D (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451062 8w7e:D (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451063 8w7e:E (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451064 8w7e:E (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451065 8w7e:F (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451066 8w7e:F (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451067 8w7e:G (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451068 8w7e:G (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451069 8w7e:H (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451070 8w7e:H (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451071 8w7e:I (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451072 8w7e:I (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451073 8w7e:J (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451074 8w7e:K (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451075 8w7e:K (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451076 8w7e:L (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451077 8w7e:M (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451078 8w7e:M (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451079 8w7e:N (2.8) BS01 9I3 N/A N/A Q16740 N/A
    451080 8w7e:N (2.8) BS02 9I3 N/A N/A Q16740 N/A
    451081 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451082 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451083 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451084 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    451085 8w7g:A (1.8) BS01 HEM N/A N/A A0A1H5RFX8 N/A
    451086 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    451087 8w7j:A (3.98) BS01 GTP N/A N/A A0A2U3S0J5 39154050
    451088 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    451089 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    451090 8w7m:3 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    451091 8w7m:4 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    451092 8w7m:5 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    451093 8w7m:6 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    451094 8w7m:7 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    451095 8w7m:7 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    451096 8w7x:A (2.2) BS02 BCT N/A N/A N/A N/A
    451097 8w7x:B (2.2) BS02 BCT N/A N/A N/A N/A
    451098 8w7x:C (2.2) BS02 BCT N/A N/A N/A N/A
    451099 8w7x:D (2.2) BS02 BCT N/A N/A N/A N/A
    451100 8w7y:A (2.4) BS01 UDP N/A N/A N/A N/A
    451101 8w87:R (2.8) BS01 B40 ? GO:0001594 ... Q96RJ0 37935377
    451102 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    451103 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    451104 8w88:R (2.6) BS03 UJL ? GO:0001594 ... Q96RJ0 37935377
    451105 8w89:R (3.0) BS01 PEA ? GO:0001594 ... Q96RJ0 37935377
    451106 8w8a:R (2.8) BS01 T5U ? GO:0001594 ... Q96RJ0 37935377
    451107 8w8b:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    451108 8w8b:R (3.0) BS02 UJL ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    451109 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74    		 GO:0003824 ... O60942 38816438
    451110 8w8h:A (3.2) BS01 ILE N/A N/A N/A N/A
    451111 8w8h:A (3.2) BS02 ILE N/A N/A N/A N/A
    451112 8w8h:B (3.2) BS01 ILE N/A N/A N/A N/A
    451113 8w8h:B (3.2) BS02 ILE N/A N/A N/A N/A
    451114 8w8h:C (3.2) BS01 ILE N/A N/A N/A N/A
    451115 8w8h:C (3.2) BS02 ILE N/A N/A N/A N/A
    451116 8w8h:D (3.2) BS01 ILE N/A N/A N/A N/A
    451117 8w8h:D (3.2) BS02 ILE N/A N/A N/A N/A
    451118 8w8j:A (1.807) BS01 W1Q N/A N/A Q9I502 N/A
    451119 8w8j:B (1.807) BS01 W1Q N/A N/A Q9I502 N/A
    451120 8w8k:A (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    451121 8w8k:B (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    451122 8w8l:A (1.824) BS01 W20 N/A N/A Q9I502 N/A
    451123 8w8l:B (1.824) BS01 W20 N/A N/A Q9I502 N/A
    451124 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    451125 8w95:b (2.03) BS04 OXY N/A N/A A0A173CSP7 N/A
    451126 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    451127 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    451128 8w9g:A (2.6) BS01 5PT N/A N/A P03147 N/A
    451129 8w9g:A (2.6) BS02 5PT N/A N/A P03147 N/A
    451130 8w9g:B (2.6) BS01 5PT N/A N/A P03147 N/A
    451131 8w9g:C (2.6) BS01 5PT N/A N/A P03147 N/A
    451132 8w9g:C (2.6) BS02 5PT N/A N/A P03147 N/A
    451133 8w9g:D (2.6) BS01 5PT N/A N/A P03147 N/A
    451134 8w9g:E (2.6) BS01 5PT N/A N/A P03147 N/A
    451135 8w9g:E (2.6) BS02 5PT N/A N/A P03147 N/A
    451136 8w9g:F (2.6) BS01 5PT N/A N/A P03147 N/A
    451137 8w9i:A (2.45) BS01 W2H N/A N/A Q9I502 N/A
    451138 8w9i:B (2.45) BS01 W2H N/A N/A Q9I502 N/A
    451139 8w9m:C (3.1) BS01 ATP ? GO:0005524 ... Q8YZ76 38457518
    451140 8w9m:C (3.1) BS03 ATP ? GO:0005524 ... Q8YZ76 38457518
    451141 8w9m:D (3.1) BS01 ATP ? GO:0005524 ... Q8YZ75 38457518
    451142 8w9m:D (3.1) BS02 ATP ? GO:0005524 ... Q8YZ75 38457518
    451143 8w9u:A (1.85) BS01 SAH N/A N/A O31590 N/A
    451144 8w9u:B (1.85) BS01 SAH N/A N/A O31590 N/A
    451145 8w9w:A (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451146 8w9w:A (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451147 8w9w:B (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451148 8w9w:B (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451149 8w9w:C (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451150 8w9w:C (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451151 8w9w:D (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451152 8w9w:E (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451153 8w9w:F (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451154 8w9w:F (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    451155 8wa2:A (3.0) BS01 FUB ? N/A A8J9H7 38552612
    451156 8wa2:A (3.0) BS02 FUB ? N/A A8J9H7 38552612
    451157 8wa2:A (3.0) BS03 FUB ? N/A A8J9H7 38552612
    451158 8wa2:A (3.0) BS04 GZL ? N/A A8J9H7 38552612
    451159 8wa2:A (3.0) BS05 FUB ? N/A A8J9H7 38552612
    451160 8wa2:A (3.0) BS06 FUB ? N/A A8J9H7 38552612
    451161 8wa2:A (3.0) BS07 GZL ? N/A A8J9H7 38552612
    451162 8wa2:A (3.0) BS08 FUB ? N/A A8J9H7 38552612
    451163 8wa2:A (3.0) BS09 FUB ? N/A A8J9H7 38552612
    451164 8wa2:A (3.0) BS10 FUB ? N/A A8J9H7 38552612
    451165 8wa2:A (3.0) BS11 FUB ? N/A A8J9H7 38552612
    451166 8wa2:A (3.0) BS12 FUB ? N/A A8J9H7 38552612
    451167 8wa2:A (3.0) BS13 FUB ? N/A A8J9H7 38552612
    451168 8wa2:A (3.0) BS14 FUB ? N/A A8J9H7 38552612
    451169 8wa2:A (3.0) BS15 FUB ? N/A A8J9H7 38552612
    451170 8wa2:A (3.0) BS16 FUB ? N/A A8J9H7 38552612
    451171 8wa2:A (3.0) BS17 FUB ? N/A A8J9H7 38552612
    451172 8wa2:A (3.0) BS18 FUB ? N/A A8J9H7 38552612
    451173 8wa2:A (3.0) BS19 FUB ? N/A A8J9H7 38552612
    451174 8wa2:A (3.0) BS20 FUB ? N/A A8J9H7 38552612
    451175 8wa2:A (3.0) BS21 FUB ? N/A A8J9H7 38552612
    451176 8wa2:A (3.0) BS22 FUB ? N/A A8J9H7 38552612
    451177 8wa2:A (3.0) BS23 FUB ? N/A A8J9H7 38552612
    451178 8wa2:A (3.0) BS24 BMA ? N/A A8J9H7 38552612
    451179 8wa2:A (3.0) BS25 MAN ? N/A A8J9H7 38552612
    451180 8wa2:A (3.0) BS26 FUB ? N/A A8J9H7 38552612
    451181 8wa2:A (3.0) BS27 GZL ? N/A A8J9H7 38552612
    451182 8wa2:A (3.0) BS28 AHR ? N/A A8J9H7 38552612
    451183 8wa2:A (3.0) BS29 AHR ? N/A A8J9H7 38552612
    451184 8wa2:A (3.0) BS30 AHR ? N/A A8J9H7 38552612
    451185 8wa2:A (3.0) BS32 GLA ? N/A A8J9H7 38552612
    451186 8wa2:A (3.0) BS33 GLA ? N/A A8J9H7 38552612
    451187 8wa2:A (3.0) BS34 GLA ? N/A A8J9H7 38552612
    451188 8wa2:A (3.0) BS35 GLA ? N/A A8J9H7 38552612
    451189 8wa2:A (3.0) BS36 GLA ? N/A A8J9H7 38552612
    451190 8wa2:A (3.0) BS37 GLA ? N/A A8J9H7 38552612
    451191 8wa2:A (3.0) BS38 GLA ? N/A A8J9H7 38552612
    451192 8wa2:A (3.0) BS39 GLA ? N/A A8J9H7 38552612
    451193 8wa2:A (3.0) BS40 GLA ? N/A A8J9H7 38552612
    451194 8wa2:A (3.0) BS41 GLA ? N/A A8J9H7 38552612
    451195 8wa2:A (3.0) BS42 GLA ? N/A A8J9H7 38552612
    451196 8wa2:B (3.0) BS01 FUB ? N/A A8J9H7 38552612
    451197 8wa2:B (3.0) BS02 FUB ? N/A A8J9H7 38552612
    451198 8wa2:B (3.0) BS03 FUB ? N/A A8J9H7 38552612
    451199 8wa2:B (3.0) BS04 FUB ? N/A A8J9H7 38552612
    451200 8wa2:B (3.0) BS05 AHR ? N/A A8J9H7 38552612
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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