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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    449801 8vcw:A (1.35) BS01 SAM 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    449802 8vcw:A (1.35) BS02 Q46 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    449803 8vcw:A (1.35) BS03 SF4 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    449804 8vcw:A (1.35) BS04 DTB 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    449805 8vda:A (2.02) BS01 COA 2.3.1.180
    2.3.1.300    		 GO:0004315 ... O34746 38310992
    449806 8vdj:A (2.002) BS01 A1AA0 N/A N/A P0DTD1 39090095
    449807 8vdj:B (2.002) BS01 A1AA0 N/A N/A P0DTD1 39090095
    449808 8vdn:A (2.39) BS04 AMP 6.5.1.1 N/A P18858 38522520
    449809 8vdw:A (1.807) BS01 Q46 2.8.1.6 GO:0003824 ... N/A 38215281
    449810 8vdw:A (1.807) BS02 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    449811 8vdw:A (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    449812 8vdw:A (1.807) BS04 DTB 2.8.1.6 GO:0003824 ... N/A 38215281
    449813 8vdw:B (1.807) BS01 Q46 2.8.1.6 GO:0003824 ... N/A 38215281
    449814 8vdw:B (1.807) BS02 DTB 2.8.1.6 GO:0003824 ... N/A 38215281
    449815 8vdw:B (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    449816 8vdw:B (1.807) BS04 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    449817 8ve0:A (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449818 8ve0:B (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449819 8ve0:C (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449820 8ve0:D (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449821 8ve1:A (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449822 8ve1:B (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449823 8ve1:C (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449824 8ve1:D (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    449825 8ve5:B (3.4) BS01 P2C ? GO:0005179 ... P02766 N/A
    449826 8ve5:D (3.4) BS01 P2C ? GO:0005179 ... P02766 N/A
    449827 8ve6:B (4.1) BS01 P2C ? GO:0005179 ... P02766 N/A
    449828 8ve6:D (4.1) BS01 P2C ? GO:0005179 ... P02766 N/A
    449829 8ve8:A (2.8) BS01 MAN N/A N/A P08669 39243373
    449830 8ve8:B (2.8) BS01 MAN N/A N/A P08669 39243373
    449831 8ve8:C (2.8) BS01 MAN N/A N/A P08669 39243373
    449832 8veh:C (2.6) BS01 GLY ? GO:0030288 ... Q1RKI7 N/A
    449833 8ven:A (1.8) BS01 A1ADP 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    449834 8veo:A (2.03) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    449835 8vep:A (2.002) BS01 JPP 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    449836 8veq:A (2.4) BS01 59H 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    449837 8vet:A (2.63) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    449838 8vet:A (2.63) BS02 A1AAS 2.1.1.320 GO:0000387 ... O14744 38595098
    449839 8veu:A (2.46) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    449840 8veu:A (2.46) BS02 A1AAT 2.1.1.320 GO:0000387 ... O14744 38595098
    449841 8vev:C (3.06) BS01 6MD N/A N/A N/A N/A
    449842 8vev:D (3.06) BS01 6MD N/A N/A N/A N/A
    449843 8vev:H (3.06) BS01 6MD N/A N/A N/A N/A
    449844 8vev:L (3.06) BS01 6MD N/A N/A N/A N/A
    449845 8vew:A (2.69) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    449846 8vew:A (2.69) BS02 A1AAU 2.1.1.320 GO:0000387 ... O14744 38595098
    449847 8vex:A (2.79) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    449848 8vex:A (2.79) BS02 A1AAR 2.1.1.320 GO:0000387 ... O14744 38595098
    449849 8vey:A (2.44) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    449850 8vey:A (2.44) BS02 A1AAV 2.1.1.320 GO:0000387 ... O14744 38595098
    449851 8vf0:A (2.028) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    449852 8vf0:A (2.028) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    449853 8vf3:A (1.469) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    449854 8vf3:A (1.469) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    449855 8vf6:A (2.7) BS01 A1AAY 2.7.11.1 N/A Q9BYT3 38781365
    449856 8vf6:B (2.7) BS01 A1AAY 2.7.11.1 N/A Q9BYT3 38781365
    449857 8vfa:A (2.05) BS04 G2P 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    449858 8vfb:A (2.64) BS04 G2P 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    449859 8vfd:A (2.1) BS04 A1ACD 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    449860 8vfh:A (2.01) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    449861 8vfi:A (1.77) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    449862 8vfp:A (2.7) BS01 4MA ? GO:0004497 ... Q2IU02 N/A
    449863 8vfp:A (2.7) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    449864 8vfr:A (2.018) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    449865 8vfr:A (2.018) BS02 4MA ? GO:0004497 ... Q2IU02 N/A
    449866 8vfr:A (2.018) BS03 E5X ? GO:0004497 ... Q2IU02 N/A
    449867 8vg5:A (1.5) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    449868 8vg8:A (1.33) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    449869 8vh7:A (1.982) BS01 UDP N/A N/A Q5SGE1 N/A
    449870 8vh7:A (1.982) BS03 UDP N/A N/A Q5SGE1 N/A
    449871 8vh7:B (1.982) BS01 UDP N/A N/A Q5SGE1 N/A
    449872 8vh7:B (1.982) BS03 UDP N/A N/A Q5SGE1 N/A
    449873 8vh8:A (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    449874 8vh8:A (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    449875 8vh8:B (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    449876 8vh8:B (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    449877 8vh8:C (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    449878 8vh8:C (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    449879 8vh8:D (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    449880 8vh8:D (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    449881 8vh9:A (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449882 8vh9:B (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449883 8vha:A (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    449884 8vha:B (2.28) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449885 8vha:B (2.28) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    449886 8vha:C (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    449887 8vha:D (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    449888 8vha:D (2.28) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449889 8vhb:A (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    449890 8vhb:A (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449891 8vhb:B (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    449892 8vhb:C (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    449893 8vhb:C (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449894 8vhb:D (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    449895 8vhc:A (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449896 8vhc:B (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    449897 8vhd:A (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    449898 8vhd:B (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    449899 8vhd:C (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    449900 8vhd:D (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    449901 8vhd:D (2.38) BS02 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    449902 8vhe:A (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    449903 8vhe:B (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    449904 8vhe:C (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    449905 8vhe:D (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    449906 8vhh:A (2.15) BS01 PLP N/A N/A P50909 39074291
    449907 8vhh:B (2.15) BS01 PLP N/A N/A P50909 39074291
    449908 8vhl:A (1.93) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    449909 8vhl:A (1.93) BS02 A1AA2 1.3.5.2 GO:0004151 ... Q02127 38505861
    449910 8vhm:A (2.26) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    449911 8vhm:A (2.26) BS02 A1AA1 1.3.5.2 GO:0004151 ... Q02127 38505861
    449912 8vhn:A (2.62) BS01 ATP N/A N/A P00452 39164005
    449913 8vhn:A (2.62) BS02 ATP N/A N/A P00452 39164005
    449914 8vhn:A (2.62) BS03 ATP N/A N/A P00452 39164005
    449915 8vhn:A (2.62) BS04 ATP N/A N/A P00452 39164005
    449916 8vhn:B (2.62) BS01 ATP N/A N/A P00452 39164005
    449917 8vhn:B (2.62) BS02 ATP N/A N/A P00452 39164005
    449918 8vhn:B (2.62) BS03 ATP N/A N/A P00452 39164005
    449919 8vhn:B (2.62) BS04 ATP N/A N/A P00452 39164005
    449920 8vho:A (2.548) BS01 DTP N/A N/A P00452 39164005
    449921 8vho:A (2.548) BS02 DTP N/A N/A P00452 39164005
    449922 8vho:A (2.548) BS03 DTP N/A N/A P00452 39164005
    449923 8vho:B (2.548) BS01 DTP N/A N/A P00452 39164005
    449924 8vho:B (2.548) BS02 DTP N/A N/A P00452 39164005
    449925 8vho:B (2.548) BS03 DTP N/A N/A P00452 39164005
    449926 8vhp:A (2.608) BS01 ATP N/A N/A P00452 39164005
    449927 8vhp:A (2.608) BS02 ATP N/A N/A P00452 39164005
    449928 8vhp:A (2.608) BS03 ATP N/A N/A P00452 39164005
    449929 8vhp:A (2.608) BS04 CDP N/A N/A P00452 39164005
    449930 8vhp:A (2.608) BS05 ATP N/A N/A P00452 39164005
    449931 8vhp:B (2.608) BS01 ATP N/A N/A P00452 39164005
    449932 8vhp:B (2.608) BS02 ATP N/A N/A P00452 39164005
    449933 8vhp:B (2.608) BS03 ATP N/A N/A P00452 39164005
    449934 8vhp:B (2.608) BS04 ATP N/A N/A P00452 39164005
    449935 8vhp:B (2.608) BS05 CDP N/A N/A P00452 39164005
    449936 8vhp:C (2.608) BS01 ATP N/A N/A P00452 39164005
    449937 8vhp:C (2.608) BS02 ATP N/A N/A P00452 39164005
    449938 8vhp:C (2.608) BS03 ATP N/A N/A P00452 39164005
    449939 8vhp:C (2.608) BS04 CDP N/A N/A P00452 39164005
    449940 8vhp:C (2.608) BS05 ATP N/A N/A P00452 39164005
    449941 8vhp:D (2.608) BS01 ATP N/A N/A P00452 39164005
    449942 8vhp:D (2.608) BS02 ATP N/A N/A P00452 39164005
    449943 8vhp:D (2.608) BS03 ATP N/A N/A P00452 39164005
    449944 8vhp:D (2.608) BS04 ATP N/A N/A P00452 39164005
    449945 8vhp:D (2.608) BS05 CDP N/A N/A P00452 39164005
    449946 8vhp:E (2.608) BS01 ATP N/A N/A P00452 39164005
    449947 8vhp:E (2.608) BS02 ATP N/A N/A P00452 39164005
    449948 8vhp:E (2.608) BS03 ATP N/A N/A P00452 39164005
    449949 8vhp:E (2.608) BS04 CDP N/A N/A P00452 39164005
    449950 8vhp:E (2.608) BS05 ATP N/A N/A P00452 39164005
    449951 8vhp:F (2.608) BS01 ATP N/A N/A P00452 39164005
    449952 8vhp:F (2.608) BS02 ATP N/A N/A P00452 39164005
    449953 8vhp:F (2.608) BS03 ATP N/A N/A P00452 39164005
    449954 8vhp:F (2.608) BS04 ATP N/A N/A P00452 39164005
    449955 8vhp:F (2.608) BS05 CDP N/A N/A P00452 39164005
    449956 8vhp:G (2.608) BS01 ATP N/A N/A P00452 39164005
    449957 8vhp:G (2.608) BS02 ATP N/A N/A P00452 39164005
    449958 8vhp:G (2.608) BS03 ATP N/A N/A P00452 39164005
    449959 8vhp:G (2.608) BS04 CDP N/A N/A P00452 39164005
    449960 8vhp:G (2.608) BS05 ATP N/A N/A P00452 39164005
    449961 8vhp:H (2.608) BS01 ATP N/A N/A P00452 39164005
    449962 8vhp:H (2.608) BS02 ATP N/A N/A P00452 39164005
    449963 8vhp:H (2.608) BS03 ATP N/A N/A P00452 39164005
    449964 8vhp:H (2.608) BS04 ATP N/A N/A P00452 39164005
    449965 8vhp:H (2.608) BS05 CDP N/A N/A P00452 39164005
    449966 8vhq:A (3.4) BS01 DTP N/A N/A P00452 39164005
    449967 8vhq:A (3.4) BS02 ATP N/A N/A P00452 39164005
    449968 8vhq:A (3.4) BS03 DTP N/A N/A P00452 39164005
    449969 8vhq:A (3.4) BS04 DTP N/A N/A P00452 39164005
    449970 8vhq:B (3.4) BS01 DTP N/A N/A P00452 39164005
    449971 8vhq:B (3.4) BS02 DTP N/A N/A P00452 39164005
    449972 8vhq:B (3.4) BS03 ATP N/A N/A P00452 39164005
    449973 8vhq:B (3.4) BS04 DTP N/A N/A P00452 39164005
    449974 8vhq:C (3.4) BS01 DTP N/A N/A P00452 39164005
    449975 8vhq:C (3.4) BS02 ATP N/A N/A P00452 39164005
    449976 8vhq:C (3.4) BS03 DTP N/A N/A P00452 39164005
    449977 8vhq:C (3.4) BS04 DTP N/A N/A P00452 39164005
    449978 8vhq:D (3.4) BS01 DTP N/A N/A P00452 39164005
    449979 8vhq:D (3.4) BS02 DTP N/A N/A P00452 39164005
    449980 8vhq:D (3.4) BS03 ATP N/A N/A P00452 39164005
    449981 8vhq:D (3.4) BS04 DTP N/A N/A P00452 39164005
    449982 8vhr:A (3.55) BS01 DTP N/A N/A P00452 39164005
    449983 8vhr:A (3.55) BS02 GTP N/A N/A P00452 39164005
    449984 8vhr:A (3.55) BS03 DTP N/A N/A P00452 39164005
    449985 8vhr:A (3.55) BS04 DTP N/A N/A P00452 39164005
    449986 8vhr:B (3.55) BS01 DTP N/A N/A P00452 39164005
    449987 8vhr:B (3.55) BS02 DTP N/A N/A P00452 39164005
    449988 8vhr:B (3.55) BS03 GTP N/A N/A P00452 39164005
    449989 8vhr:B (3.55) BS04 DTP N/A N/A P00452 39164005
    449990 8vhr:C (3.55) BS01 DTP N/A N/A P00452 39164005
    449991 8vhr:C (3.55) BS02 GTP N/A N/A P00452 39164005
    449992 8vhr:C (3.55) BS03 DTP N/A N/A P00452 39164005
    449993 8vhr:D (3.55) BS01 DTP N/A N/A P00452 39164005
    449994 8vhr:D (3.55) BS02 DTP N/A N/A P00452 39164005
    449995 8vhr:D (3.55) BS03 GTP N/A N/A P00452 39164005
    449996 8vhr:D (3.55) BS04 DTP N/A N/A P00452 39164005
    449997 8vhu:A (2.1) BS01 DTP N/A N/A P00452
    P69924    		 39164005
    449998 8vhu:A (2.1) BS02 DTP N/A N/A P00452
    P69924    		 39164005
    449999 8vhu:A (2.1) BS03 DTP N/A N/A P00452
    P69924    		 39164005
    450000 8vhu:B (2.1) BS01 DTP N/A N/A P00452
    P69924    		 39164005
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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