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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    445601 8tf4:A (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    445602 8tf4:A (2.86) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    445603 8tf4:A (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    445604 8tf4:B (2.86) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    445605 8tf4:B (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    445606 8tf4:B (2.86) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    445607 8tf4:B (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    445608 8tf4:B (2.86) BS05 ECN ? GO:0005216 ... Q9XSM3 38141613
    445609 8tf4:B (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    445610 8tf4:B (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    445611 8tf4:B (2.86) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    445612 8tf4:B (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    445613 8tf4:C (2.86) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    445614 8tf4:C (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    445615 8tf4:C (2.86) BS03 ERG ? GO:0005216 ... Q9XSM3 38141613
    445616 8tf4:C (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    445617 8tf4:C (2.86) BS05 ECN ? GO:0005216 ... Q9XSM3 38141613
    445618 8tf4:C (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    445619 8tf4:C (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    445620 8tf4:C (2.86) BS08 ERG ? GO:0005216 ... Q9XSM3 38141613
    445621 8tf4:C (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    445622 8tf4:D (2.86) BS01 ERG ? GO:0005216 ... Q9XSM3 38141613
    445623 8tf4:D (2.86) BS02 ERG ? GO:0005216 ... Q9XSM3 38141613
    445624 8tf4:D (2.86) BS03 ECN ? GO:0005216 ... Q9XSM3 38141613
    445625 8tf4:D (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    445626 8tf4:D (2.86) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    445627 8tf4:D (2.86) BS06 ERG ? GO:0005216 ... Q9XSM3 38141613
    445628 8tf4:D (2.86) BS07 ERG ? GO:0005216 ... Q9XSM3 38141613
    445629 8tf4:D (2.86) BS08 CPL ? GO:0005216 ... Q9XSM3 38141613
    445630 8tf4:D (2.86) BS09 ECN ? GO:0005216 ... Q9XSM3 38141613
    445631 8tf9:A (1.55) BS01 I7P 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    445632 8tfa:A (1.4) BS01 U6J 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    445633 8tff:A (2.34) BS04 BEF ? GO:0000160 ... A5FFU4 N/A
    445634 8tff:B (2.34) BS04 BEF ? GO:0000160 ... A5FFU4 N/A
    445635 8tff:B (2.34) BS05 BEF ? GO:0000160 ... A5FFU4 N/A
    445636 8tfk:A (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445637 8tfk:A (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445638 8tfk:B (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445639 8tfk:B (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445640 8tfk:C (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445641 8tfk:C (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445642 8tfk:D (2.66) BS04 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445643 8tfk:D (2.66) BS05 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445644 8tfk:E (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445645 8tfk:E (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445646 8tfk:F (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445647 8tfk:F (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445648 8tfk:G (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445649 8tfk:G (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445650 8tfk:H (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445651 8tfk:H (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445652 8tfk:I (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445653 8tfk:I (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445654 8tfk:J (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445655 8tfk:J (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445656 8tfk:K (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445657 8tfk:K (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445658 8tfk:L (2.66) BS01 P3S 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445659 8tfk:L (2.66) BS02 ADP 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    445660 8tfo:A (2.0) BS01 MEV 2.7.1.36 GO:0004496 ... A0A1D1VW28 38411551
    445661 8tfo:B (2.0) BS01 MEV 2.7.1.36 GO:0004496 ... A0A1D1VW28 38411551
    445662 8tfp:A (1.78) BS01 84K N/A N/A N/A 37534714
    445663 8tfp:B (1.78) BS01 84K N/A N/A N/A 37534714
    445664 8tfp:H (1.78) BS01 84K N/A N/A N/A 37534714
    445665 8tfp:L (1.78) BS01 84K N/A N/A N/A 37534714
    445666 8tfq:A (1.8) BS01 7V7 N/A N/A N/A 37534714
    445667 8tfq:B (1.8) BS01 7V7 N/A N/A N/A 37534714
    445668 8tfq:H (1.8) BS01 7V7 N/A N/A N/A 37534714
    445669 8tfq:L (1.8) BS01 7V7 N/A N/A N/A 37534714
    445670 8tfw:A (1.93) BS01 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    445671 8tfw:A (1.93) BS02 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    445672 8tfw:B (1.93) BS01 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    445673 8tfw:B (1.93) BS02 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    445674 8tfx:A (1.7) BS01 A2P 2.7.1.- GO:0000215 ... O57899 37883434
    445675 8tfy:A (1.54) BS01 NAP 2.7.1.- GO:0000215 ... O57899 37883434
    445676 8tfz:A (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    445677 8tfz:B (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    445678 8tg3:A (1.47) BS01 HQG 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    445679 8tg4:A (1.37) BS02 9SO 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    445680 8tg5:A (2.0) BS01 9S2 2.7.1.- GO:0000215 ... O57899 37883434
    445681 8tgb:A (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    445682 8tgb:B (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    445683 8tgd:A (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445684 8tgd:A (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445685 8tgd:C (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445686 8tgd:C (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445687 8tgg:A (3.6) BS01 WRF ? GO:0005335 ... P54219 38499039
    445688 8tgg:B (3.6) BS01 YHR ? GO:0005335 ... P54219 38499039
    445689 8tgh:A (3.5) BS01 1WE ? GO:0005335 ... P54219 38499039
    445690 8tgh:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    445691 8tgi:A (3.4) BS01 LDP ? GO:0005335 ... P54219 38499039
    445692 8tgi:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    445693 8tgj:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    445694 8tgk:A (3.7) BS01 HSM ? GO:0005335 ... P54219 38499039
    445695 8tgk:B (3.7) BS01 YHR ? GO:0005335 ... P54219 38499039
    445696 8tgl:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    445697 8tgm:A (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    445698 8tgm:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    445699 8tgn:A (3.3) BS01 SRO ? GO:0005335 ... P54219 38499039
    445700 8tgn:B (3.3) BS01 YHR ? GO:0005335 ... P54219 38499039
    445701 8tgo:C (5.75) BS01 MAN N/A N/A N/A 38582771
    445702 8tgo:C (5.75) BS02 MAN N/A N/A N/A 38582771
    445703 8tgo:D (5.75) BS01 MAN N/A N/A N/A 38582771
    445704 8tgo:D (5.75) BS02 MAN N/A N/A N/A 38582771
    445705 8tgo:L (5.75) BS01 MAN N/A N/A N/A 38582771
    445706 8tgo:O (5.75) BS01 MAN N/A N/A N/A 38582771
    445707 8tgo:P (5.75) BS01 MAN N/A N/A N/A 38582771
    445708 8tgo:P (5.75) BS02 MAN N/A N/A N/A 38582771
    445709 8tgo:b (5.75) BS01 BMA N/A N/A N/A 38582771
    445710 8tgo:b (5.75) BS02 MAN N/A N/A N/A 38582771
    445711 8tgo:c (5.75) BS01 MAN N/A N/A N/A 38582771
    445712 8tgo:c (5.75) BS02 MAN N/A N/A N/A 38582771
    445713 8tgo:f (5.75) BS01 MAN N/A N/A N/A 38582771
    445714 8tgw:A (3.6) BS01 BMA N/A N/A N/A 39187497
    445715 8tgy:A (2.18) BS01 9U1 ? GO:0005886 ... U2EQ00 37645731
    445716 8tgy:C (2.18) BS01 DMU N/A N/A N/A 37645731
    445717 8tgy:D (2.18) BS01 DMU N/A N/A N/A 37645731
    445718 8tgy:E (2.18) BS01 9U1 ? GO:0005886 ... U2EQ00 37645731
    445719 8th3:A (3.0) BS01 Y01 ? GO:0042597 ... P0ABE7
    P30556    		 38744986
    445720 8th3:A (3.0) BS02 Y01 ? GO:0042597 ... P0ABE7
    P30556    		 38744986
    445721 8th4:A (3.3) BS01 LSN ? GO:0042597 ... P0ABE7
    P30556    		 38744986
    445722 8thb:A (3.2) BS01 AGS ? GO:0000724 ... Q12050 38427736
    445723 8thb:B (3.2) BS01 AGS ? GO:0000077 ... P40339 38427736
    445724 8thb:B (3.2) BS02 AGS ? GO:0000077 ... P40339 38427736
    445725 8thb:C (3.2) BS01 AGS ? GO:0000077 ... P38629 38427736
    445726 8thb:D (3.2) BS01 AGS ? GO:0000076 ... P40348 38427736
    445727 8thb:E (3.2) BS01 ADP ? GO:0000077 ... P38251 38427736
    445728 8thc:A (3.67) BS01 AGS ? GO:0000724 ... Q12050 38427736
    445729 8thc:B (3.67) BS01 AGS ? GO:0000077 ... P40339 38427736
    445730 8thc:B (3.67) BS02 AGS ? GO:0000077 ... P40339 38427736
    445731 8thc:C (3.67) BS01 AGS ? GO:0000077 ... P38629 38427736
    445732 8thc:D (3.67) BS01 AGS ? GO:0000076 ... P40348 38427736
    445733 8thc:E (3.67) BS01 ADP ? GO:0000077 ... P38251 38427736
    445734 8thd:A (3.25) BS01 AGS ? GO:0000724 ... Q12050 38427736
    445735 8thd:B (3.25) BS01 AGS ? GO:0000077 ... P40339 38427736
    445736 8thd:B (3.25) BS02 AGS ? GO:0000077 ... P40339 38427736
    445737 8thd:C (3.25) BS01 AGS ? GO:0000077 ... P38629 38427736
    445738 8thd:D (3.25) BS01 AGS ? GO:0000076 ... P40348 38427736
    445739 8thd:E (3.25) BS01 ADP ? GO:0000077 ... P38251 38427736
    445740 8the:A (2.5) BS01 HEM ? GO:0009279 ... Q9HV88 38325368
    445741 8the:A (2.5) BS02 CTQ ? GO:0009279 ... Q9HV88 38325368
    445742 8thg:A (2.9) BS01 657 ? GO:0001518 ... Q15858 37782796
    445743 8thg:A (2.9) BS02 Y01 ? GO:0001518 ... Q15858 37782796
    445744 8thg:A (2.9) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    445745 8thg:A (2.9) BS04 LPE ? GO:0001518 ... Q15858 37782796
    445746 8thg:A (2.9) BS05 LPE ? GO:0001518 ... Q15858 37782796
    445747 8thg:A (2.9) BS06 P5S ? GO:0001518 ... Q15858 37782796
    445748 8thg:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37782796
    445749 8thg:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37782796
    445750 8thh:A (2.7) BS01 IYJ ? GO:0001518 ... Q15858 37782796
    445751 8thh:A (2.7) BS02 IYJ ? GO:0001518 ... Q15858 37782796
    445752 8thh:A (2.7) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    445753 8thh:A (2.7) BS04 Y01 ? GO:0001518 ... Q15858 37782796
    445754 8thh:A (2.7) BS05 Y01 ? GO:0001518 ... Q15858 37782796
    445755 8thh:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 37782796
    445756 8thh:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37782796
    445757 8thh:A (2.7) BS08 P5S ? GO:0001518 ... Q15858 37782796
    445758 8thh:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37782796
    445759 8thh:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37782796
    445760 8thh:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37782796
    445761 8thh:A (2.7) BS12 LPE ? GO:0001518 ... Q15858 37782796
    445762 8thh:A (2.7) BS13 Y01 ? GO:0001518 ... Q15858 37782796
    445763 8thk:R (2.6) BS01 CGZ 3.2.1.17 GO:0003796 ... P00720
    P35348    		 37563160
    445764 8thl:R (3.1) BS01 ALE 3.2.1.17 GO:0003796 ... P00720
    P35348    		 37563160
    445765 8thm:A (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    445766 8thm:B (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    445767 8thm:C (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    445768 8thm:D (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    445769 8thm:D (2.3) BS03 BCT 4.2.1.1 N/A B5ILN4 38728392
    445770 8thm:E (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    445771 8thm:F (2.3) BS01 BCT 4.2.1.1 N/A B5ILN4 38728392
    445772 8thm:F (2.3) BS03 RUB 4.2.1.1 N/A B5ILN4 38728392
    445773 8thn:C (2.9) BS01 TBA ? GO:0005249 ... P0A334 38042487
    445774 8thr:A (3.12) BS01 EBZ ? GO:0001975 ... Q05940 38517752
    445775 8thx:A (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445776 8thx:B (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445777 8thx:C (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445778 8thx:D (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445779 8thx:E (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445780 8thy:A (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445781 8thy:B (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445782 8thy:C (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445783 8thy:D (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445784 8thy:E (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445785 8ti0:A (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445786 8ti0:B (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445787 8ti0:C (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445788 8ti0:D (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445789 8ti0:E (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445790 8ti0:F (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445791 8ti0:G (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    445792 8ti1:A (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445793 8ti1:A (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445794 8ti1:B (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445795 8ti1:B (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445796 8ti1:C (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445797 8ti1:C (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445798 8ti1:D (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445799 8ti1:D (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445800 8ti1:E (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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