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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    444001 8ss9:A (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444002 8ss9:A (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444003 8ss9:A (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444004 8ss9:B (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444005 8ss9:B (2.72) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444006 8ss9:B (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444007 8ss9:C (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444008 8ss9:C (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444009 8ss9:C (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444010 8ss9:D (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444011 8ss9:D (2.72) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444012 8ss9:D (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444013 8ssa:A (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444014 8ssa:A (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444015 8ssa:B (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444016 8ssa:C (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444017 8ssa:C (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444018 8ssa:D (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444019 8ssb:A (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444020 8ssb:A (3.66) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444021 8ssb:B (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444022 8ssb:C (3.66) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444023 8ssb:C (3.66) BS02 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444024 8ssb:D (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444025 8sse:A (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    444026 8sse:B (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    444027 8sse:C (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    444028 8sse:D (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    444029 8sse:E (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    444030 8sse:F (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    444031 8ssh:A (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    444032 8ssh:B (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    444033 8ssh:C (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    444034 8ssh:D (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    444035 8ssi:A (2.5) BS01 AYE ? N/A Q63K53 N/A
    444036 8ssi:C (2.5) BS01 AYE ? N/A Q63K53 N/A
    444037 8ssl:A (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    444038 8ssl:B (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    444039 8ssl:C (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    444040 8ssn:A (2.86) BS01 AY7 2.7.10.2 GO:0004672 ... P00519 37590418
    444041 8ssn:A (2.86) BS02 SKI 2.7.10.2 GO:0004672 ... P00519 37590418
    444042 8ssn:B (2.86) BS01 AY7 2.7.10.2 GO:0004672 ... P00519 37590418
    444043 8ssn:B (2.86) BS02 SKI 2.7.10.2 GO:0004672 ... P00519 37590418
    444044 8sso:A (1.97) BS01 627 2.7.11.1 GO:0000212 ... O14965 37590418
    444045 8sso:D (1.97) BS01 627 2.7.11.1 GO:0000212 ... O14965 37590418
    444046 8ssp:A (2.6) BS01 PDO 2.7.11.1 GO:0000212 ... O14965 37590418
    444047 8ssp:A (2.6) BS02 627 2.7.11.1 GO:0000212 ... O14965 37590418
    444048 8ssw:A (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    444049 8ssw:B (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    444050 8ssy:A (1.8) BS01 DSN 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    444051 8ssy:B (1.8) BS01 DSN 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    444052 8ssz:A (2.64) BS01 ACH ? GO:0004888 ... P43681 38454578
    444053 8ssz:B (2.64) BS01 ACH ? GO:0001666 ... P17787 38454578
    444054 8ssz:D (2.64) BS01 ACH ? GO:0004888 ... P43681 38454578
    444055 8st0:A (2.4) BS01 ACH ? GO:0004888 ... P43681 38454578
    444056 8st0:B (2.4) BS01 ACH ? GO:0001666 ... P17787 38454578
    444057 8st0:D (2.4) BS01 ACH ? GO:0004888 ... P43681 38454578
    444058 8st1:A (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    444059 8st1:B (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    444060 8st1:D (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    444061 8st2:A (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    444062 8st2:B (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    444063 8st2:C (2.94) BS01 ACH ? GO:0004888 ... P17787 38454578
    444064 8st2:D (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    444065 8st2:E (2.94) BS01 ACH ? GO:0004888 ... P17787 38454578
    444066 8st3:A (2.93) BS01 ACH ? GO:0004888 ... P43681 38454578
    444067 8st3:B (2.93) BS01 ACH ? GO:0004888 ... P17787 38454578
    444068 8st3:D (2.93) BS01 ACH ? GO:0004888 ... P43681 38454578
    444069 8st3:E (2.93) BS01 ACH ? GO:0004888 ... P17787 38454578
    444070 8st4:A (2.35) BS01 ACH ? GO:0004888 ... P43681 38454578
    444071 8st4:B (2.35) BS01 ACH ? GO:0004888 ... P17787 38454578
    444072 8st4:D (2.35) BS01 ACH ? GO:0004888 ... P43681 38454578
    444073 8st4:E (2.35) BS01 ACH ? GO:0004888 ... P17787 38454578
    444074 8st6:A (1.45) BS01 USR ? N/A A8AWU7 N/A
    444075 8st7:A (1.44) BS01 AYE ? GO:0004842 ... A0A2V2RSR1 38091999
    444076 8st7:B (1.44) BS01 AYE ? N/A P0CG48 38091999
    444077 8st7:C (1.44) BS01 AYE ? GO:0004842 ... A0A2V2RSR1 38091999
    444078 8st7:D (1.44) BS01 AYE ? N/A P0CG48 38091999
    444079 8st8:A (1.75) BS01 AYE 2.3.2.26 GO:0004842 ... Q8ZNR3 38091999
    444080 8st9:A (2.5) BS01 AYE 2.3.2.26 GO:0004842 ... A0A0H3JDV8 38091999
    444081 8st9:C (2.5) BS01 AYE 2.3.2.26 GO:0004842 ... A0A0H3JDV8 38091999
    444082 8std:A (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    444083 8std:B (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    444084 8std:C (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    444085 8std:D (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    444086 8std:E (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    444087 8std:F (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    444088 8ste:A (3.34) BS01 FUN ? GO:0006811 ... P55011 36306358
    444089 8ste:B (3.34) BS01 FUN ? GO:0006811 ... P55011 36306358
    444090 8stg:A (3.79) BS01 WCJ 2.7.10.1 GO:0004672 ... P21802 37270847
    444091 8stg:B (3.79) BS01 WCJ 2.7.10.1 GO:0004672 ... P21802 37270847
    444092 8sth:A (1.97) BS01 WWU ? GO:0002218 ... Q86WV6 37486969
    444093 8sti:A (1.72) BS01 WX8 ? GO:0002218 ... Q86WV6 37486969
    444094 8stm:A (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    444095 8stm:B (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    444096 8stm:C (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    444097 8stm:D (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    444098 8stn:A (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    444099 8stn:B (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    444100 8stp:A (3.09) BS01 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444101 8stq:A (2.955) BS01 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444102 8str:A (2.77) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444103 8sts:A (3.02) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444104 8sts:C (3.02) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444105 8stt:A (2.62) BS02 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444106 8stt:C (2.62) BS02 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444107 8stu:A (2.76) BS02 H9Y 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444108 8stv:A (2.78) BS01 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444109 8stv:C (2.78) BS02 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    444110 8stw:A (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    444111 8stw:A (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    444112 8stw:B (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    444113 8stw:B (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    444114 8stw:C (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    444115 8stw:C (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    444116 8stw:D (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    444117 8stw:D (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    444118 8stw:E (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    444119 8stw:E (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    444120 8stw:F (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    444121 8stw:F (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    444122 8sty:A (1.9) BS01 WGE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37561993
    444123 8stz:A (1.85) BS01 WGI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37561993
    444124 8su1:A (1.37) BS02 210 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444125 8su2:A (1.33) BS01 RIS 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444126 8su3:A (1.29) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444127 8su3:A (1.29) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444128 8su4:A (1.43) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444129 8su4:A (1.43) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444130 8su5:A (1.48) BS01 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444131 8su5:A (1.48) BS03 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    444132 8su6:A (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    444133 8su6:B (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    444134 8su8:A (2.01) BS01 XE2 ? GO:0005856 ... O00522 37974623
    444135 8su8:B (2.01) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    444136 8su9:A (2.83) BS01 AR6 N/A N/A N/A 38096827
    444137 8su9:B (2.83) BS01 AR6 N/A N/A N/A 38096827
    444138 8su9:C (2.83) BS01 AR6 N/A N/A N/A 38096827
    444139 8su9:D (2.83) BS01 AR6 N/A N/A N/A 38096827
    444140 8su9:E (2.83) BS01 AR6 N/A N/A N/A 38096827
    444141 8su9:F (2.83) BS01 AR6 N/A N/A N/A 38096827
    444142 8su9:G (2.83) BS01 AR6 N/A N/A N/A 38096827
    444143 8su9:H (2.83) BS01 AR6 N/A N/A N/A 38096827
    444144 8su9:I (2.83) BS01 AR6 N/A N/A N/A 38096827
    444145 8su9:J (2.83) BS01 AR6 N/A N/A N/A 38096827
    444146 8su9:K (2.83) BS01 AR6 N/A N/A N/A 38096827
    444147 8su9:L (2.83) BS01 AR6 N/A N/A N/A 38096827
    444148 8su9:M (2.83) BS01 ADP N/A N/A N/A 38096827
    444149 8su9:N (2.83) BS01 ADP N/A N/A N/A 38096827
    444150 8su9:O (2.83) BS01 ADP N/A N/A N/A 38096827
    444151 8su9:P (2.83) BS01 ADP N/A N/A N/A 38096827
    444152 8su9:Q (2.83) BS01 ADP N/A N/A N/A 38096827
    444153 8sua:A (1.6) BS01 YT9 N/A GO:0003677 ... N/A 37945601
    444154 8sub:A (2.89) BS01 AR6 N/A N/A N/A 38096827
    444155 8sub:B (2.89) BS01 AR6 N/A N/A N/A 38096827
    444156 8sub:C (2.89) BS01 AR6 N/A N/A N/A 38096827
    444157 8sub:D (2.89) BS01 AR6 N/A N/A N/A 38096827
    444158 8sub:E (2.89) BS01 AR6 N/A N/A N/A 38096827
    444159 8sub:F (2.89) BS01 AR6 N/A N/A N/A 38096827
    444160 8sub:G (2.89) BS01 AR6 N/A N/A N/A 38096827
    444161 8sub:H (2.89) BS01 AR6 N/A N/A N/A 38096827
    444162 8sub:I (2.89) BS01 AR6 N/A N/A N/A 38096827
    444163 8sub:J (2.89) BS01 AR6 N/A N/A N/A 38096827
    444164 8sub:K (2.89) BS01 AR6 N/A N/A N/A 38096827
    444165 8sub:L (2.89) BS01 AR6 N/A N/A N/A 38096827
    444166 8sub:M (2.89) BS01 ADP N/A N/A N/A 38096827
    444167 8sub:N (2.89) BS01 ADP N/A N/A N/A 38096827
    444168 8sub:O (2.89) BS01 ADP N/A N/A N/A 38096827
    444169 8sub:P (2.89) BS01 ADP N/A N/A N/A 38096827
    444170 8sub:Q (2.89) BS01 ADP N/A N/A N/A 38096827
    444171 8suf:C (4.0) BS01 MAN ? N/A Q9N5Z3 N/A
    444172 8sui:B (2.0) BS01 SER 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    444173 8sun:B (3.12) BS03 JRF ? GO:0002407 ... Q6P9J9 37573365
    444174 8sut:A (1.93) BS01 IO9 ? GO:0003824 ... O06724 38047707
    444175 8sut:B (1.93) BS02 IO9 ? GO:0003824 ... O06724 38047707
    444176 8suw:A (3.15) BS01 AR6 N/A N/A N/A 38096827
    444177 8suw:B (3.15) BS01 AR6 N/A N/A N/A 38096827
    444178 8suw:C (3.15) BS01 AR6 N/A N/A N/A 38096827
    444179 8suw:D (3.15) BS01 AR6 N/A N/A N/A 38096827
    444180 8suw:E (3.15) BS01 AR6 N/A N/A N/A 38096827
    444181 8suw:F (3.15) BS01 AR6 N/A N/A N/A 38096827
    444182 8suw:G (3.15) BS01 AR6 N/A N/A N/A 38096827
    444183 8suw:H (3.15) BS01 AR6 N/A N/A N/A 38096827
    444184 8suw:I (3.15) BS01 AR6 N/A N/A N/A 38096827
    444185 8suw:J (3.15) BS01 AR6 N/A N/A N/A 38096827
    444186 8suw:K (3.15) BS01 AR6 N/A N/A N/A 38096827
    444187 8suw:L (3.15) BS01 AR6 N/A N/A N/A 38096827
    444188 8suw:M (3.15) BS01 ADP N/A N/A N/A 38096827
    444189 8suw:N (3.15) BS01 ADP N/A N/A N/A 38096827
    444190 8suw:O (3.15) BS01 ADP N/A N/A N/A 38096827
    444191 8sux:A (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    444192 8sux:A (2.93) BS02 ATP N/A GO:0006302 ... N/A 38177683
    444193 8sux:B (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    444194 8sux:B (2.93) BS02 ATP N/A GO:0006302 ... N/A 38177683
    444195 8sux:C (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    444196 8sux:D (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    444197 8sux:E (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    444198 8sux:F (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    444199 8suy:B (3.38) BS01 M7G N/A N/A P52298 N/A
    444200 8sv2:A (1.84) BS01 C5P ? GO:0016757 ... Q15KI8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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