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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    443801 8srf:B (2.52) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    443802 8srf:B (2.52) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    443803 8srf:B (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443804 8srf:B (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443805 8srf:B (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    443806 8srf:B (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    443807 8srf:C (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443808 8srf:C (2.52) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    443809 8srf:C (2.52) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    443810 8srf:C (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443811 8srf:C (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443812 8srf:C (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    443813 8srf:C (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    443814 8srf:D (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443815 8srf:D (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443816 8srf:D (2.52) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443817 8srf:D (2.52) BS04 RP5 ? GO:0005216 ... F2UB89 N/A
    443818 8srf:D (2.52) BS05 AMP ? GO:0005216 ... F2UB89 N/A
    443819 8srf:D (2.52) BS06 APR ? GO:0005216 ... F2UB89 N/A
    443820 8srf:D (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    443821 8srg:A (3.03) BS01 RP5 ? GO:0005216 ... F2UB89 N/A
    443822 8srg:A (3.03) BS02 AMP ? GO:0005216 ... F2UB89 N/A
    443823 8srg:A (3.03) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443824 8srg:A (3.03) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443825 8srg:A (3.03) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443826 8srg:A (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443827 8srg:B (3.03) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443828 8srg:B (3.03) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    443829 8srg:B (3.03) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    443830 8srg:B (3.03) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443831 8srg:B (3.03) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443832 8srg:B (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443833 8srg:C (3.03) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443834 8srg:C (3.03) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    443835 8srg:C (3.03) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    443836 8srg:C (3.03) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443837 8srg:C (3.03) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443838 8srg:C (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443839 8srg:D (3.03) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443840 8srg:D (3.03) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443841 8srg:D (3.03) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443842 8srg:D (3.03) BS04 RP5 ? GO:0005216 ... F2UB89 N/A
    443843 8srg:D (3.03) BS05 AMP ? GO:0005216 ... F2UB89 N/A
    443844 8srg:D (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443845 8srh:A (3.79) BS01 APR ? GO:0005216 ... F2UB89 N/A
    443846 8srh:A (3.79) BS03 APR ? GO:0005216 ... F2UB89 N/A
    443847 8srh:A (3.79) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    443848 8srh:A (3.79) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443849 8srh:A (3.79) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443850 8srh:B (3.79) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443851 8srh:B (3.79) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443852 8srh:B (3.79) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443853 8srh:B (3.79) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443854 8srh:B (3.79) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443855 8srh:C (3.79) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443856 8srh:C (3.79) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443857 8srh:C (3.79) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443858 8srh:C (3.79) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443859 8srh:C (3.79) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443860 8srh:D (3.79) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443861 8srh:D (3.79) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443862 8srh:D (3.79) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443863 8srh:D (3.79) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443864 8srh:D (3.79) BS06 APR ? GO:0005216 ... F2UB89 N/A
    443865 8sri:A (2.73) BS01 APR ? GO:0005216 ... F2UB89 N/A
    443866 8sri:A (2.73) BS05 APR ? GO:0005216 ... F2UB89 N/A
    443867 8sri:A (2.73) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443868 8sri:A (2.73) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443869 8sri:A (2.73) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443870 8sri:B (2.73) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443871 8sri:B (2.73) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443872 8sri:B (2.73) BS06 APR ? GO:0005216 ... F2UB89 N/A
    443873 8sri:B (2.73) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443874 8sri:B (2.73) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443875 8sri:C (2.73) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443876 8sri:C (2.73) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443877 8sri:C (2.73) BS06 APR ? GO:0005216 ... F2UB89 N/A
    443878 8sri:C (2.73) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443879 8sri:C (2.73) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443880 8sri:D (2.73) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443881 8sri:D (2.73) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443882 8sri:D (2.73) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443883 8sri:D (2.73) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443884 8sri:D (2.73) BS08 APR ? GO:0005216 ... F2UB89 N/A
    443885 8srj:A (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443886 8srj:A (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443887 8srj:A (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443888 8srj:B (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443889 8srj:B (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443890 8srj:B (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443891 8srj:C (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443892 8srj:C (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443893 8srj:C (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443894 8srj:D (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443895 8srj:D (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443896 8srj:D (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443897 8srk:A (4.14) BS01 APR ? GO:0005216 ... F2UB89 N/A
    443898 8srk:A (4.14) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443899 8srk:A (4.14) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    443900 8srk:A (4.14) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443901 8srk:A (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443902 8srk:B (4.14) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443903 8srk:B (4.14) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443904 8srk:B (4.14) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    443905 8srk:B (4.14) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443906 8srk:B (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443907 8srk:C (4.14) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443908 8srk:C (4.14) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443909 8srk:C (4.14) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    443910 8srk:C (4.14) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443911 8srk:C (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443912 8srk:D (4.14) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443913 8srk:D (4.14) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443914 8srk:D (4.14) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443915 8srk:D (4.14) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443916 8srk:D (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443917 8srl:A (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    443918 8srl:B (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    443919 8srl:C (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    443920 8srl:D (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 N/A
    443921 8srr:B (3.22) BS01 M7G N/A N/A P52298 N/A
    443922 8srx:A (2.09) BS01 K6G ? GO:0042981 ... Q16611 38088212
    443923 8srx:A (2.09) BS03 K6G ? GO:0042981 ... Q16611 38088212
    443924 8srx:B (2.09) BS01 K6G ? GO:0042981 ... Q07812 38088212
    443925 8srx:B (2.09) BS02 K6G ? GO:0042981 ... Q07812 38088212
    443926 8srx:C (2.09) BS01 K6G ? GO:0042981 ... Q16611 38088212
    443927 8srx:C (2.09) BS02 K6G ? GO:0042981 ... Q16611 38088212
    443928 8srx:D (2.09) BS01 K6G ? GO:0042981 ... Q07812 38088212
    443929 8ss0:A (2.25) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 38206808
    443930 8ss0:A (2.25) BS02 WQR 1.14.14.154 GO:0004497 ... Q16850 38206808
    443931 8ss0:B (2.25) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 38206808
    443932 8ss0:B (2.25) BS02 WQR 1.14.14.154 GO:0004497 ... Q16850 38206808
    443933 8ss2:A (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443934 8ss2:A (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443935 8ss2:A (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443936 8ss2:A (3.58) BS04 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443937 8ss2:B (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443938 8ss2:C (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443939 8ss2:C (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443940 8ss2:C (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443941 8ss2:D (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443942 8ss3:A (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443943 8ss3:A (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443944 8ss3:A (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443945 8ss3:A (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443946 8ss3:A (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443947 8ss3:A (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443948 8ss3:A (3.21) BS07 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443949 8ss3:B (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443950 8ss3:C (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443951 8ss3:C (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443952 8ss3:C (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443953 8ss3:C (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443954 8ss3:C (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443955 8ss3:C (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443956 8ss3:D (3.21) BS01 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443957 8ss3:D (3.21) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443958 8ss4:A (3.3) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443959 8ss6:A (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443960 8ss6:A (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443961 8ss6:A (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443962 8ss6:A (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443963 8ss6:B (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443964 8ss6:B (3.01) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443965 8ss6:B (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443966 8ss6:B (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443967 8ss6:B (3.01) BS05 SPD ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443968 8ss6:C (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443969 8ss6:C (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443970 8ss6:C (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443971 8ss6:C (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443972 8ss6:D (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443973 8ss6:D (3.01) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443974 8ss6:D (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443975 8ss6:D (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443976 8ss7:A (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443977 8ss7:A (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443978 8ss7:A (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443979 8ss7:A (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443980 8ss7:A (2.76) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443981 8ss7:B (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443982 8ss7:B (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443983 8ss7:B (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443984 8ss7:C (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443985 8ss7:C (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443986 8ss7:C (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443987 8ss7:C (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443988 8ss7:D (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443989 8ss7:D (2.76) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443990 8ss7:D (2.76) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443991 8ss7:D (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443992 8ss8:A (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443993 8ss8:A (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443994 8ss8:B (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443995 8ss8:B (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443996 8ss8:C (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443997 8ss8:C (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443998 8ss8:C (2.81) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    443999 8ss8:D (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    444000 8ss8:D (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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