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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    443601 8sqk:A (3.01) BS04 VSN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 37890482
    443602 8sqk:A (3.01) BS05 VSN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 37890482
    443603 8sqo:A (1.55) BS02 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    443604 8sqp:A (2.05) BS01 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    443605 8sqq:A (2.25) BS01 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    443606 8sqr:A (1.65) BS06 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    443607 8sqt:A (2.2) BS04 HEM 1.16.3.1 GO:0004322 ... Q2YKI4 N/A
    443608 8sqw:C (2.16) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443609 8sqw:C (2.16) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443610 8sqw:C (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443611 8sqw:G (2.16) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443612 8sqw:G (2.16) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443613 8sqw:G (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443614 8sqw:K (2.16) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443615 8sqw:K (2.16) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443616 8sqw:K (2.16) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443617 8sr1:C (2.18) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443618 8sr1:C (2.18) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443619 8sr1:C (2.18) BS04 WIY 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443620 8sr1:G (2.18) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443621 8sr1:G (2.18) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443622 8sr1:G (2.18) BS04 WIY 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443623 8sr1:K (2.18) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443624 8sr1:K (2.18) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443625 8sr1:K (2.18) BS04 WIY 1.14.13.25 GO:0004497 ... Q603F1 38187819
    443626 8sr2:C (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    443627 8sr2:C (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    443628 8sr2:G (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    443629 8sr2:G (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    443630 8sr2:K (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    443631 8sr2:K (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    443632 8sr6:A (2.22) BS02 SAH ? N/A Q5ZUS4 37795993
    443633 8sr7:A (1.97) BS01 RP5 ? GO:0005216 ... F2UB89 38773335
    443634 8sr7:A (1.97) BS02 AMP ? GO:0005216 ... F2UB89 38773335
    443635 8sr7:A (1.97) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443636 8sr7:A (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    443637 8sr7:A (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    443638 8sr7:A (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443639 8sr7:B (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443640 8sr7:B (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    443641 8sr7:B (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    443642 8sr7:B (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    443643 8sr7:B (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    443644 8sr7:B (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443645 8sr7:C (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443646 8sr7:C (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    443647 8sr7:C (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    443648 8sr7:C (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    443649 8sr7:C (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    443650 8sr7:C (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443651 8sr7:D (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443652 8sr7:D (1.97) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443653 8sr7:D (1.97) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443654 8sr7:D (1.97) BS04 RP5 ? GO:0005216 ... F2UB89 38773335
    443655 8sr7:D (1.97) BS05 AMP ? GO:0005216 ... F2UB89 38773335
    443656 8sr7:D (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443657 8sr8:A (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443658 8sr8:A (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443659 8sr8:A (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443660 8sr8:A (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443661 8sr8:B (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443662 8sr8:B (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443663 8sr8:B (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443664 8sr8:B (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443665 8sr8:C (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443666 8sr8:C (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443667 8sr8:C (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443668 8sr8:C (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443669 8sr8:D (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443670 8sr8:D (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443671 8sr8:D (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443672 8sr8:D (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443673 8sr9:A (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443674 8sr9:A (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443675 8sr9:A (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443676 8sr9:A (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443677 8sr9:B (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443678 8sr9:B (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443679 8sr9:B (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443680 8sr9:B (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443681 8sr9:C (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443682 8sr9:C (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443683 8sr9:C (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443684 8sr9:C (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443685 8sr9:D (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443686 8sr9:D (3.05) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443687 8sr9:D (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443688 8sr9:D (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443689 8sra:A (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443690 8sra:A (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443691 8sra:A (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443692 8sra:A (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443693 8sra:B (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443694 8sra:B (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443695 8sra:B (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443696 8sra:B (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443697 8sra:C (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443698 8sra:C (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443699 8sra:C (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443700 8sra:C (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443701 8sra:D (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443702 8sra:D (2.93) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443703 8sra:D (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443704 8sra:D (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443705 8srb:A (2.82) BS01 APR ? GO:0005216 ... F2UB89 38773335
    443706 8srb:A (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443707 8srb:A (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443708 8srb:A (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443709 8srb:A (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443710 8srb:B (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443711 8srb:B (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    443712 8srb:B (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443713 8srb:B (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443714 8srb:B (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443715 8srb:C (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443716 8srb:C (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    443717 8srb:C (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443718 8srb:C (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    443719 8srb:C (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443720 8srb:D (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443721 8srb:D (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443722 8srb:D (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443723 8srb:D (2.82) BS04 APR ? GO:0005216 ... F2UB89 38773335
    443724 8srb:D (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    443725 8src:A (2.92) BS01 APR ? GO:0005216 ... F2UB89 38773335
    443726 8src:A (2.92) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    443727 8src:A (2.92) BS07 APR ? GO:0005216 ... F2UB89 38773335
    443728 8src:A (2.92) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    443729 8src:A (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443730 8src:A (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    443731 8src:B (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443732 8src:B (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    443733 8src:B (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    443734 8src:B (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    443735 8src:B (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443736 8src:B (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    443737 8src:C (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443738 8src:C (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    443739 8src:C (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    443740 8src:C (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    443741 8src:C (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443742 8src:C (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    443743 8src:D (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    443744 8src:D (2.92) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    443745 8src:D (2.92) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    443746 8src:D (2.92) BS04 APR ? GO:0005216 ... F2UB89 38773335
    443747 8src:D (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    443748 8src:D (2.92) BS10 APR ? GO:0005216 ... F2UB89 38773335
    443749 8srd:A (2.91) BS01 APR ? GO:0005216 ... F2UB89 N/A
    443750 8srd:A (2.91) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443751 8srd:A (2.91) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443752 8srd:A (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443753 8srd:A (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443754 8srd:B (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443755 8srd:B (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443756 8srd:B (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    443757 8srd:B (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    443758 8srd:B (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443759 8srd:C (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443760 8srd:C (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443761 8srd:C (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    443762 8srd:C (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    443763 8srd:C (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443764 8srd:D (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443765 8srd:D (2.91) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443766 8srd:D (2.91) BS03 APR ? GO:0005216 ... F2UB89 N/A
    443767 8srd:D (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    443768 8srd:D (2.91) BS06 APR ? GO:0005216 ... F2UB89 N/A
    443769 8sre:A (2.52) BS01 APR ? GO:0005216 ... F2UB89 N/A
    443770 8sre:A (2.52) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    443771 8sre:A (2.52) BS07 APR ? GO:0005216 ... F2UB89 N/A
    443772 8sre:A (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443773 8sre:A (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443774 8sre:A (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    443775 8sre:B (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443776 8sre:B (2.52) BS02 APR ? GO:0005216 ... F2UB89 N/A
    443777 8sre:B (2.52) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    443778 8sre:B (2.52) BS08 APR ? GO:0005216 ... F2UB89 N/A
    443779 8sre:B (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443780 8sre:B (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    443781 8sre:C (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443782 8sre:C (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443783 8sre:C (2.52) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    443784 8sre:C (2.52) BS04 APR ? GO:0005216 ... F2UB89 N/A
    443785 8sre:C (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443786 8sre:C (2.52) BS10 APR ? GO:0005216 ... F2UB89 N/A
    443787 8sre:D (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    443788 8sre:D (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    443789 8sre:D (2.52) BS03 APR ? GO:0005216 ... F2UB89 N/A
    443790 8sre:D (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443791 8sre:D (2.52) BS09 APR ? GO:0005216 ... F2UB89 N/A
    443792 8sre:D (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    443793 8srf:A (2.52) BS01 RP5 ? GO:0005216 ... F2UB89 N/A
    443794 8srf:A (2.52) BS02 AMP ? GO:0005216 ... F2UB89 N/A
    443795 8srf:A (2.52) BS03 APR ? GO:0005216 ... F2UB89 N/A
    443796 8srf:A (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    443797 8srf:A (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    443798 8srf:A (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    443799 8srf:A (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    443800 8srf:B (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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