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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    441401 8sa9:B (1.1) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441402 8saa:A (1.45) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441403 8saa:B (1.45) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441404 8sab:A (1.6) BS01 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441405 8sab:A (1.6) BS02 PP3 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441406 8sab:A (1.6) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441407 8sab:A (1.6) BS04 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441408 8sab:B (1.6) BS01 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441409 8sab:B (1.6) BS02 LYS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441410 8sab:B (1.6) BS03 PP3 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441411 8sab:B (1.6) BS04 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441412 8sac:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441413 8sac:A (1.8) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441414 8sac:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441415 8sac:B (1.8) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441416 8sac:C (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441417 8sac:C (1.8) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441418 8sac:D (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441419 8sac:D (1.8) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441420 8sad:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441421 8sad:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441422 8sae:A (1.5) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441423 8sae:B (1.5) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441424 8saf:A (1.23) BS02 ZUJ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    441425 8sag:A (1.52) BS02 ZUS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    441426 8sai:A (3.27) BS01 S12 ? GO:0004930 ... Q9UPC5 37733739
    441427 8sak:A (3.0) BS01 FUC ? GO:0005515 ... A0A2R4KP93 37756379
    441428 8sam:A (2.15) BS01 ATP ? GO:0004672 ... A0A6H0TJ16
    A0A7U1BAR4    		 37901177
    441429 8sam:B (2.15) BS01 ATP ? GO:0004672 ... A0A6H0TJ16
    A0A7U1BAR4    		 37901177
    441430 8san:D (4.6) BS01 MAN N/A N/A N/A 37188681
    441431 8san:H (4.6) BS01 MAN N/A N/A N/A 37188681
    441432 8san:L (4.6) BS01 MAN N/A N/A N/A 37188681
    441433 8saq:C (3.9) BS01 MAN N/A N/A N/A 37188681
    441434 8saq:H (3.9) BS01 MAN N/A N/A N/A 37188681
    441435 8saq:M (3.9) BS01 MAN N/A N/A N/A 37188681
    441436 8sar:D (3.82) BS01 MAN N/A N/A N/A 37188681
    441437 8sar:D (3.82) BS02 MAN N/A N/A N/A 37188681
    441438 8sar:I (3.82) BS01 MAN N/A N/A N/A 37188681
    441439 8sar:I (3.82) BS02 MAN N/A N/A N/A 37188681
    441440 8sar:M (3.82) BS01 MAN N/A N/A N/A 37188681
    441441 8sar:N (3.82) BS01 MAN N/A N/A N/A 37188681
    441442 8sar:N (3.82) BS02 MAN N/A N/A N/A 37188681
    441443 8sas:D (4.0) BS01 MAN N/A N/A N/A 37188681
    441444 8sas:D (4.0) BS02 MAN N/A N/A N/A 37188681
    441445 8sas:I (4.0) BS01 MAN N/A N/A N/A 37188681
    441446 8sas:N (4.0) BS01 MAN N/A N/A N/A 37188681
    441447 8sau:C (3.3) BS01 MAN N/A N/A N/A 37188681
    441448 8sau:C (3.3) BS02 MAN N/A N/A N/A 37188681
    441449 8sau:D (3.3) BS01 MAN N/A N/A N/A 37188681
    441450 8sau:D (3.3) BS02 MAN N/A N/A N/A 37188681
    441451 8sau:D (3.3) BS03 MAN N/A N/A N/A 37188681
    441452 8sau:H (3.3) BS01 MAN N/A N/A N/A 37188681
    441453 8sau:H (3.3) BS02 MAN N/A N/A N/A 37188681
    441454 8sau:I (3.3) BS01 MAN N/A N/A N/A 37188681
    441455 8sau:I (3.3) BS02 MAN N/A N/A N/A 37188681
    441456 8sau:M (3.3) BS01 MAN N/A N/A N/A 37188681
    441457 8sau:M (3.3) BS02 MAN N/A N/A N/A 37188681
    441458 8sau:N (3.3) BS01 MAN N/A N/A N/A 37188681
    441459 8sau:N (3.3) BS02 MAN N/A N/A N/A 37188681
    441460 8sax:D (4.0) BS01 MAN N/A N/A N/A 37188681
    441461 8sax:H (4.0) BS01 MAN N/A N/A N/A 37188681
    441462 8sax:L (4.0) BS01 MAN N/A N/A N/A 37188681
    441463 8say:D (3.4) BS01 MAN N/A N/A N/A 37188681
    441464 8say:H (3.4) BS01 MAN N/A N/A N/A 37188681
    441465 8say:I (3.4) BS01 MAN N/A N/A N/A 37188681
    441466 8say:I (3.4) BS02 MAN N/A N/A N/A 37188681
    441467 8say:N (3.4) BS01 MAN N/A N/A N/A 37188681
    441468 8saz:C (3.9) BS01 MAN N/A N/A N/A 37188681
    441469 8saz:C (3.9) BS02 MAN N/A N/A N/A 37188681
    441470 8saz:C (3.9) BS03 MAN N/A N/A N/A 37188681
    441471 8saz:D (3.9) BS01 MAN N/A N/A N/A 37188681
    441472 8saz:D (3.9) BS02 MAN N/A N/A N/A 37188681
    441473 8saz:H (3.9) BS01 MAN N/A N/A N/A 37188681
    441474 8saz:H (3.9) BS02 MAN N/A N/A N/A 37188681
    441475 8saz:I (3.9) BS01 MAN N/A N/A N/A 37188681
    441476 8saz:I (3.9) BS02 MAN N/A N/A N/A 37188681
    441477 8saz:M (3.9) BS01 MAN N/A N/A N/A 37188681
    441478 8saz:N (3.9) BS01 MAN N/A N/A N/A 37188681
    441479 8saz:N (3.9) BS02 MAN N/A N/A N/A 37188681
    441480 8sb0:C (4.2) BS01 MAN N/A N/A N/A 37188681
    441481 8sb0:C (4.2) BS02 MAN N/A N/A N/A 37188681
    441482 8sb0:D (4.2) BS01 MAN N/A N/A N/A 37188681
    441483 8sb0:D (4.2) BS02 MAN N/A N/A N/A 37188681
    441484 8sb0:H (4.2) BS01 MAN N/A N/A N/A 37188681
    441485 8sb0:H (4.2) BS02 MAN N/A N/A N/A 37188681
    441486 8sb0:H (4.2) BS03 MAN N/A N/A N/A 37188681
    441487 8sb0:I (4.2) BS01 MAN N/A N/A N/A 37188681
    441488 8sb0:M (4.2) BS01 MAN N/A N/A N/A 37188681
    441489 8sb0:M (4.2) BS02 MAN N/A N/A N/A 37188681
    441490 8sb0:N (4.2) BS01 MAN N/A N/A N/A 37188681
    441491 8sb1:D (4.3) BS01 MAN N/A N/A N/A 37188681
    441492 8sb1:D (4.3) BS02 MAN N/A N/A N/A 37188681
    441493 8sb1:D (4.3) BS03 MAN N/A N/A N/A 37188681
    441494 8sb1:I (4.3) BS01 MAN N/A N/A N/A 37188681
    441495 8sb1:I (4.3) BS02 MAN N/A N/A N/A 37188681
    441496 8sb1:I (4.3) BS03 MAN N/A N/A N/A 37188681
    441497 8sb1:N (4.3) BS01 MAN N/A N/A N/A 37188681
    441498 8sb1:N (4.3) BS02 MAN N/A N/A N/A 37188681
    441499 8sb1:N (4.3) BS03 MAN N/A N/A N/A 37188681
    441500 8sb2:D (3.5) BS01 MAN N/A N/A N/A 37188681
    441501 8sb2:D (3.5) BS02 MAN N/A N/A N/A 37188681
    441502 8sb2:I (3.5) BS01 MAN N/A N/A N/A 37188681
    441503 8sb2:I (3.5) BS02 MAN N/A N/A N/A 37188681
    441504 8sb2:N (3.5) BS01 MAN N/A N/A N/A 37188681
    441505 8sb2:N (3.5) BS02 MAN N/A N/A N/A 37188681
    441506 8sb3:C (4.1) BS01 BMA N/A N/A N/A 37188681
    441507 8sb3:C (4.1) BS02 MAN N/A N/A N/A 37188681
    441508 8sb3:D (4.1) BS01 MAN N/A N/A N/A 37188681
    441509 8sb3:H (4.1) BS01 BMA N/A N/A N/A 37188681
    441510 8sb3:H (4.1) BS02 MAN N/A N/A N/A 37188681
    441511 8sb3:I (4.1) BS01 MAN N/A N/A N/A 37188681
    441512 8sb3:M (4.1) BS01 BMA N/A N/A N/A 37188681
    441513 8sb3:M (4.1) BS02 MAN N/A N/A N/A 37188681
    441514 8sb3:M (4.1) BS03 MAN N/A N/A N/A 37188681
    441515 8sb3:N (4.1) BS01 MAN N/A N/A N/A 37188681
    441516 8sb4:C (3.6) BS01 MAN N/A N/A N/A 37188681
    441517 8sb4:D (3.6) BS01 MAN N/A N/A N/A 37188681
    441518 8sb4:D (3.6) BS02 MAN N/A N/A N/A 37188681
    441519 8sb4:I (3.6) BS01 MAN N/A N/A N/A 37188681
    441520 8sb4:M (3.6) BS01 MAN N/A N/A N/A 37188681
    441521 8sb4:N (3.6) BS01 MAN N/A N/A N/A 37188681
    441522 8sb4:N (3.6) BS02 MAN N/A N/A N/A 37188681
    441523 8sb5:D (3.9) BS01 MAN N/A N/A N/A 37188681
    441524 8sb5:D (3.9) BS02 MAN N/A N/A N/A 37188681
    441525 8sb5:I (3.9) BS01 MAN N/A N/A N/A 37188681
    441526 8sb5:I (3.9) BS02 MAN N/A N/A N/A 37188681
    441527 8sb5:I (3.9) BS03 MAN N/A N/A N/A 37188681
    441528 8sb5:I (3.9) BS04 MAN N/A N/A N/A 37188681
    441529 8sb5:M (3.9) BS01 MAN N/A N/A N/A 37188681
    441530 8sb5:N (3.9) BS01 MAN N/A N/A N/A 37188681
    441531 8sb5:N (3.9) BS02 MAN N/A N/A N/A 37188681
    441532 8sb5:N (3.9) BS03 MAN N/A N/A N/A 37188681
    441533 8sbc:A (2.3) BS01 ZTV 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37399505
    441534 8sbg:A (1.94) BS01 PLP 4.1.99.1 GO:0006520 ... A0A3E5GM45 37633277
    441535 8sbi:A (2.73) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 N/A
    441536 8sbi:B (2.73) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 N/A
    441537 8sbj:A (3.1) BS01 ZUO 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37399505
    441538 8sbq:A (1.5) BS01 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    441539 8sbq:A (1.5) BS02 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    441540 8sbq:B (1.5) BS01 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    441541 8sbq:B (1.5) BS02 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    441542 8sbr:A (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    441543 8sbr:A (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    441544 8sbr:B (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    441545 8sbr:B (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    441546 8sbu:A (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    441547 8sbu:A (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    441548 8sbu:B (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    441549 8sbu:B (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    441550 8sbv:B (1.55) BS01 ADP 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441551 8sby:A (2.3) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441552 8sby:B (2.3) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441553 8sbz:A (1.9) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441554 8sbz:B (1.9) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441555 8sc0:C (1.81) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441556 8sc0:D (1.81) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    441557 8sc2:A (3.36) BS01 C9F ? GO:0005277 ... O15245 37821493
    441558 8sc3:A (3.24) BS01 ZVJ ? GO:0005277 ... O15245 37821493
    441559 8sc6:A (3.13) BS01 VIB ? GO:0005277 ... O15245 37821493
    441560 8sc7:A (1.984) BS01 D0D 2.7.10.1 N/A P00533 N/A
    441561 8sc8:A (2.687) BS01 D0D 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 N/A P48736 N/A
    441562 8sc9:B (1.855) BS01 D0D ? N/A P37231 N/A
    441563 8scb:ii (2.5) BS05 ZVM ? GO:0000184 ... P62495 38172604
    441564 8scb:jj (2.5) BS03 SF4 ? GO:0000054 ... G1SG72 38172604
    441565 8scb:jj (2.5) BS04 SF4 ? GO:0000054 ... G1SG72 38172604
    441566 8scd:A (2.06) BS01 XHP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    441567 8scd:A (2.06) BS02 PAB 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    441568 8scd:A (2.06) BS03 POP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    441569 8scg:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441570 8scg:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441571 8sci:A (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441572 8sci:D (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441573 8scj:A (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441574 8scj:D (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441575 8sck:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441576 8sck:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441577 8scl:A (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441578 8scl:D (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441579 8scm:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441580 8scm:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441581 8sco:A (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441582 8sco:D (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441583 8scp:A (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441584 8scp:D (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441585 8scq:A (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441586 8scq:D (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441587 8scr:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441588 8scr:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441589 8scs:A (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441590 8scs:D (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441591 8sct:A (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441592 8sct:D (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441593 8scu:D (2.38) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    441594 8sd2:A (2.81) BS01 FIE ? N/A P03452 38753503
    441595 8sd2:B (2.81) BS01 FIE ? N/A P03452 38753503
    441596 8sd4:A (3.11) BS01 ZW4 ? N/A P03452 38753503
    441597 8sd4:B (3.11) BS01 ZW4 ? N/A P03452 38753503
    441598 8sdb:A (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    441599 8sdb:A (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    441600 8sdb:A (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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