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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    441201 8s3d:F (1.65) BS01 NAD N/A N/A G7JYL4 39142482
    441202 8s3d:F (1.65) BS02 8GL N/A N/A G7JYL4 39142482
    441203 8s3d:F (1.65) BS04 GLY N/A N/A G7JYL4 39142482
    441204 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    441205 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    441206 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    441207 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    441208 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    441209 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    441210 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    441211 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    441212 8s3r:A (2.28) BS01 A1H48 N/A GO:0001779 ... O00329 38907711
    441213 8s3x:A (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    441214 8s3x:B (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    441215 8s3x:C (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    441216 8s3x:D (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    441217 8s45:B (1.69) BS01 G3Y N/A N/A Q8Y5E4 N/A
    441218 8s46:B (1.99) BS01 F06 N/A N/A Q8Y5E4 N/A
    441219 8s47:A (2.11) BS01 47U N/A N/A Q8Y5E4 N/A
    441220 8s47:B (2.11) BS01 47U N/A N/A Q8Y5E4 N/A
    441221 8s48:B (1.65) BS01 4AQ N/A N/A Q8Y5E4 N/A
    441222 8s49:B (1.7) BS01 45Y N/A N/A Q8Y5E4 N/A
    441223 8s4a:A (2.23) BS01 AJO N/A N/A Q8Y5E4 N/A
    441224 8s4a:B (2.23) BS01 AJO N/A N/A Q8Y5E4 N/A
    441225 8s4b:B (2.15) BS01 8G2 N/A N/A Q8Y5E4 N/A
    441226 8s4h:A (1.7) BS01 RBR N/A N/A N/A 39259810
    441227 8s4h:B (1.7) BS01 RBR N/A N/A N/A 39259810
    441228 8s4h:C (1.7) BS01 RBR N/A N/A N/A 39259810
    441229 8s4h:D (1.7) BS01 RBR N/A N/A N/A 39259810
    441230 8s4h:H (1.7) BS01 RBR N/A N/A N/A 39259810
    441231 8s4h:L (1.7) BS01 RBR N/A N/A N/A 39259810
    441232 8s4k:H (1.6) BS01 RBR N/A N/A N/A 39259810
    441233 8s4k:L (1.6) BS01 RBR N/A N/A N/A 39259810
    441234 8s5b:A (1.8) BS01 A1H5E ? GO:0015768 ... A9CEY9 38567495
    441235 8s5h:A (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441236 8s5h:B (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441237 8s5h:C (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441238 8s5h:D (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441239 8s5h:E (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441240 8s5h:F (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441241 8s5h:G (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441242 8s5h:H (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441243 8s5i:A (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441244 8s5i:B (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441245 8s5i:C (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441246 8s5i:D (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441247 8s5i:E (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441248 8s5i:F (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441249 8s5j:A (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441250 8s5j:B (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441251 8s5j:C (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441252 8s5j:D (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441253 8s5j:E (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441254 8s5j:F (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441255 8s5j:G (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441256 8s5j:H (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441257 8s5j:I (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441258 8s5j:J (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441259 8s5k:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441260 8s5k:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441261 8s5k:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441262 8s5k:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441263 8s5k:E (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441264 8s5k:F (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441265 8s5k:G (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441266 8s5k:H (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441267 8s5l:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441268 8s5l:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441269 8s5l:B (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    441270 8s5l:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441271 8s5l:C (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    441272 8s5l:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    441273 8s5m:A (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441274 8s5m:B (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441275 8s5m:C (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441276 8s5m:D (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441277 8s5m:E (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441278 8s5m:E (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441279 8s5m:F (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441280 8s5m:G (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441281 8s5m:G (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441282 8s5m:H (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441283 8s5m:I (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441284 8s5m:J (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441285 8s5m:J (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    441286 8s5x:A (1.12) BS03 FRU N/A N/A Q89EJ6 39002715
    441287 8s5y:A (1.3) BS03 FRU N/A N/A Q89EJ6 39002715
    441288 8s63:A (1.17) BS03 FRU N/A N/A Q89EJ6 39002715
    441289 8s64:A (1.42) BS01 FRU N/A N/A Q89EJ6 39002715
    441290 8s65:A (2.56) BS01 NAP N/A N/A S8ESX0 39105673
    441291 8s65:A (2.56) BS02 FOM N/A N/A S8ESX0 39105673
    441292 8s65:B (2.56) BS01 NAP N/A N/A S8ESX0 39105673
    441293 8s65:B (2.56) BS02 FOM N/A N/A S8ESX0 39105673
    441294 8s68:A (1.66) BS03 FRU N/A N/A Q89EJ6 39002715
    441295 8s69:A (1.78) BS01 FRU N/A N/A Q89EJ6 39002715
    441296 8s6j:A (2.15) BS01 657 N/A N/A A0L5S6 N/A
    441297 8s7f:A (1.6) BS03 A1H5P N/A N/A Q8FK47 39236497
    441298 8s8a:A (1.5) BS01 UK9 3.1.3.16
    3.1.3.74
    GO:0000287 ... Q96GD0 38856179
    441299 8s8c:A (1.9) BS01 GDP N/A N/A P01116 38924388
    441300 8s8c:A (1.9) BS02 A1H5U N/A N/A P01116 38924388
    441301 8s8d:k (3.45) BS03 MET N/A N/A P32481 39193907
    441302 8s8e:k (3.85) BS03 MET N/A N/A P32481 39193907
    441303 8s8f:k (3.95) BS03 MET N/A N/A P32481 39193907
    441304 8s8g:k (4.0) BS02 MET N/A N/A P32481 39193907
    441305 8s8h:k (4.0) BS02 MET N/A N/A P32481 39193907
    441306 8s8i:k (4.3) BS02 MET N/A N/A P32481 39193907
    441307 8s8j:k (4.7) BS03 MET N/A N/A P32481 39193907
    441308 8s8v:A (3.0) BS01 FMN N/A N/A Q9FEW9 39103552
    441309 8s8v:B (3.0) BS01 FMN N/A N/A Q9FEW9 39103552
    441310 8s8w:A (2.1) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    441311 8s8w:A (2.1) BS03 SGV 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    441312 8s8w:A (2.1) BS04 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    441313 8s8x:A (1.99) BS01 TO1 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    441314 8s8x:A (1.99) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    441315 8s8y:A (1.8) BS01 FMN N/A N/A Q9FEW9 39103552
    441316 8s8y:A (1.8) BS02 FMN N/A N/A Q9FEW9 39103552
    441317 8s8y:B (1.8) BS01 FMN N/A N/A Q9FEW9 39103552
    441318 8s8y:B (1.8) BS02 FMN N/A N/A Q9FEW9 39103552
    441319 8s91:A (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    441320 8s91:B (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    441321 8s91:C (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    441322 8s91:D (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441323 8s91:D (4.3) BS02 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441324 8s91:E (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441325 8s91:F (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441326 8s93:A (2.1) BS01 9AJ 2.7.10.2 GO:0004672 ... P35991 38189455
    441327 8s94:A (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    441328 8s94:B (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    441329 8s94:C (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    441330 8s94:D (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441331 8s94:E (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441332 8s94:F (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    441333 8s96:A (1.68) BS01 ZSF 4.6.1.18 GO:0003676 ... P61823 39071052
    441334 8s96:B (1.68) BS01 ZSF 4.6.1.18 GO:0003676 ... P61823 39071052
    441335 8s98:A (1.87) BS01 ZRU 2.7.10.2 GO:0004672 ... P29597 37427891
    441336 8s98:B (1.87) BS01 ZRU 2.7.10.2 GO:0004672 ... P29597 37427891
    441337 8s98:C (1.87) BS01 ZRU 2.7.10.2 GO:0004672 ... P29597 37427891
    441338 8s99:A (1.71) BS01 ZS3 2.7.10.2 GO:0004672 ... P29597 37427891
    441339 8s99:B (1.71) BS01 ZS3 2.7.10.2 GO:0004672 ... P29597 37427891
    441340 8s99:C (1.71) BS01 ZS3 2.7.10.2 GO:0004672 ... P29597 37427891
    441341 8s9a:A (1.83) BS01 ZSB 2.7.10.2 GO:0004672 ... P29597 37427891
    441342 8s9a:B (1.83) BS01 ZSB 2.7.10.2 GO:0004672 ... P29597 37427891
    441343 8s9a:C (1.83) BS01 ZSB 2.7.10.2 GO:0004672 ... P29597 37427891
    441344 8s9b:A (2.9) BS01 LQO ? GO:0001518 ... Q15858 37270609
    441345 8s9b:A (2.9) BS02 LQO ? GO:0001518 ... Q15858 37270609
    441346 8s9b:A (2.9) BS03 P5S ? GO:0001518 ... Q15858 37270609
    441347 8s9b:A (2.9) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    441348 8s9b:A (2.9) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    441349 8s9b:A (2.9) BS06 Y01 ? GO:0001518 ... Q15858 37270609
    441350 8s9b:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37270609
    441351 8s9b:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37270609
    441352 8s9b:A (2.9) BS09 P5S ? GO:0001518 ... Q15858 37270609
    441353 8s9b:A (2.9) BS10 LPE ? GO:0001518 ... Q15858 37270609
    441354 8s9b:A (2.9) BS11 LPE ? GO:0001518 ... Q15858 37270609
    441355 8s9b:A (2.9) BS12 LPE ? GO:0001518 ... Q15858 37270609
    441356 8s9b:A (2.9) BS13 LPE ? GO:0001518 ... Q15858 37270609
    441357 8s9b:A (2.9) BS14 Y01 ? GO:0001518 ... Q15858 37270609
    441358 8s9c:A (3.2) BS01 N6W ? GO:0001518 ... Q15858 37270609
    441359 8s9c:A (3.2) BS02 P5S ? GO:0001518 ... Q15858 37270609
    441360 8s9c:A (3.2) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    441361 8s9c:A (3.2) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    441362 8s9c:A (3.2) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    441363 8s9c:A (3.2) BS06 LPE ? GO:0001518 ... Q15858 37270609
    441364 8s9c:A (3.2) BS07 LPE ? GO:0001518 ... Q15858 37270609
    441365 8s9c:A (3.2) BS08 P5S ? GO:0001518 ... Q15858 37270609
    441366 8s9c:A (3.2) BS09 LPE ? GO:0001518 ... Q15858 37270609
    441367 8s9c:A (3.2) BS10 LPE ? GO:0001518 ... Q15858 37270609
    441368 8s9c:A (3.2) BS11 LPE ? GO:0001518 ... Q15858 37270609
    441369 8s9c:A (3.2) BS12 LPE ? GO:0001518 ... Q15858 37270609
    441370 8s9c:A (3.2) BS13 LPE ? GO:0001518 ... Q15858 37270609
    441371 8s9c:A (3.2) BS14 LPE ? GO:0001518 ... Q15858 37270609
    441372 8s9c:A (3.2) BS15 P5S ? GO:0001518 ... Q15858 37270609
    441373 8s9c:A (3.2) BS16 Y01 ? GO:0001518 ... Q15858 37270609
    441374 8s9c:A (3.2) BS17 LPE ? GO:0001518 ... Q15858 37270609
    441375 8s9c:B (3.2) BS01 LPE ? GO:0001518 ... Q07699 37270609
    441376 8s9d:A (2.57) BS01 FLC 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    441377 8s9f:A (2.6) BS01 1N1 2.7.10.2 GO:0004672 ... P35991 38189455
    441378 8s9f:B (2.6) BS01 1N1 2.7.10.2 GO:0004672 ... P35991 38189455
    441379 8s9h:A (2.437) BS01 ZWV ? GO:0002224 ... B3Y653 38352849
    441380 8s9h:A (2.437) BS02 ZWV ? GO:0002224 ... B3Y653 38352849
    441381 8s9h:B (2.437) BS01 ZWV ? GO:0002224 ... B3Y653 38352849
    441382 8s9h:B (2.437) BS02 ZWV ? GO:0002224 ... B3Y653 38352849
    441383 8s9m:A (1.49) BS01 SFG N/A GO:0003677 ... N/A 37414145
    441384 8s9n:A (1.89) BS01 SFG N/A GO:0003677 ... N/A 37414145
    441385 8s9o:A (1.94) BS01 SFG N/A GO:0003677 ... N/A 37414145
    441386 8s9o:B (1.94) BS01 SFG N/A GO:0003677 ... N/A 37414145
    441387 8s9q:A (2.26) BS01 WBV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 N/A
    441388 8sa7:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441389 8sa7:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441390 8sa8:A (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441391 8sa8:A (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441392 8sa8:B (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441393 8sa8:B (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441394 8sa8:C (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441395 8sa8:C (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441396 8sa8:D (1.3) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441397 8sa8:D (1.3) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441398 8sa9:A (1.1) BS01 ZTS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441399 8sa9:A (1.1) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    441400 8sa9:B (1.1) BS01 ZTS 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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