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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    440401 8rfh:A (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 N/A
    440402 8rfh:B (3.9) BS01 ADP ? GO:0006952 ... A0A0S3ANR1 N/A
    440403 8rfk:A (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    440404 8rfk:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    440405 8rfl:A (1.16) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440406 8rfl:A (1.16) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440407 8rfl:A (1.16) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440408 8rfm:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440409 8rfm:A (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440410 8rfm:B (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440411 8rfm:B (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440412 8rfm:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440413 8rfm:C (2.7) BS02 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440414 8rfm:C (2.7) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440415 8rfm:D (2.7) BS01 NAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440416 8rfm:D (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440417 8rfn:A (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440418 8rfn:B (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440419 8rfn:C (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440420 8rfn:C (2.5) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440421 8rfn:D (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    440422 8rfo:A (1.19) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440423 8rfo:A (1.19) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440424 8rfo:A (1.19) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440425 8rfp:A (1.23) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440426 8rfp:A (1.23) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440427 8rfp:A (1.23) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440428 8rfp:A (1.23) BS06 NO N/A GO:0016491 ... Q89EJ6 39002715
    440429 8rfq:A (1.32) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440430 8rfq:A (1.32) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440431 8rfq:A (1.32) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    440432 8rfr:A (1.4) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440433 8rfr:A (1.4) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440434 8rfr:A (1.4) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    440435 8rfs:A (1.54) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440436 8rft:A (1.7) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440437 8rfu:A (2.18) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    440438 8rfu:A (2.18) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    440439 8rg1:A (1.19) BS01 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    440440 8rg1:B (1.19) BS01 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    440441 8rg8:A (1.21) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    440442 8rg8:A (1.21) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    440443 8rg8:A (1.21) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    440444 8rg8:A (1.21) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    440445 8rg8:A (1.21) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440446 8rg8:A (1.21) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440447 8rg8:A (1.21) BS09 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440448 8rg8:A (1.21) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    440449 8rg9:A (1.25) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    440450 8rg9:A (1.25) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    440451 8rg9:A (1.25) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    440452 8rg9:A (1.25) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    440453 8rg9:A (1.25) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440454 8rg9:A (1.25) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440455 8rg9:A (1.25) BS09 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440456 8rg9:A (1.25) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    440457 8rgb:A (1.39) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    440458 8rgb:A (1.39) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    440459 8rgb:A (1.39) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    440460 8rgb:A (1.39) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    440461 8rgb:A (1.39) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440462 8rgb:A (1.39) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440463 8rgb:A (1.39) BS09 NO N/A GO:0016491 ... H0SLX7 39002715
    440464 8rgb:A (1.39) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    440465 8rgc:A (1.55) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    440466 8rgc:A (1.55) BS02 FRU N/A GO:0016491 ... H0SLX7 39002715
    440467 8rgc:A (1.55) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    440468 8rgc:A (1.55) BS04 GLC N/A GO:0016491 ... H0SLX7 39002715
    440469 8rgc:A (1.55) BS05 FRU N/A GO:0016491 ... H0SLX7 39002715
    440470 8rgc:A (1.55) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440471 8rgc:A (1.55) BS09 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440472 8rgc:A (1.55) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    440473 8rgd:A (1.71) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    440474 8rgd:A (1.71) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    440475 8rgd:A (1.71) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    440476 8rgd:A (1.71) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    440477 8rgd:A (1.71) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440478 8rgd:A (1.71) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    440479 8rgd:A (1.71) BS09 NO N/A GO:0016491 ... H0SLX7 39002715
    440480 8rgd:A (1.71) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    440481 8rgk:A (1.9) BS01 MYR N/A N/A P02768 38782206
    440482 8rgk:A (1.9) BS02 MYR N/A N/A P02768 38782206
    440483 8rgk:A (1.9) BS03 MYR N/A N/A P02768 38782206
    440484 8rgk:A (1.9) BS04 MYR N/A N/A P02768 38782206
    440485 8rgk:A (1.9) BS05 MYR N/A N/A P02768 38782206
    440486 8rgk:A (1.9) BS06 MYR N/A N/A P02768 38782206
    440487 8rgk:A (1.9) BS07 MYR N/A N/A P02768 38782206
    440488 8rgk:B (1.9) BS01 GOQ N/A N/A P02768 38782206
    440489 8rgk:B (1.9) BS02 MYR N/A N/A P02768 38782206
    440490 8rgk:B (1.9) BS03 MYR N/A N/A P02768 38782206
    440491 8rgk:B (1.9) BS04 MYR N/A N/A P02768 38782206
    440492 8rgk:B (1.9) BS05 MYR N/A N/A P02768 38782206
    440493 8rgk:B (1.9) BS06 MYR N/A N/A P02768 38782206
    440494 8rgk:B (1.9) BS07 MYR N/A N/A P02768 38782206
    440495 8rgl:A (1.9) BS01 MYR N/A N/A P02768 38782206
    440496 8rgl:A (1.9) BS02 MYR N/A N/A P02768 38782206
    440497 8rgl:A (1.9) BS03 MYR N/A N/A P02768 38782206
    440498 8rgl:A (1.9) BS04 MYR N/A N/A P02768 38782206
    440499 8rgl:A (1.9) BS05 MYR N/A N/A P02768 38782206
    440500 8rgl:A (1.9) BS06 MYR N/A N/A P02768 38782206
    440501 8rgl:A (1.9) BS07 GOQ N/A N/A P02768 38782206
    440502 8rgl:B (1.9) BS01 MYR N/A N/A P02768 38782206
    440503 8rgl:B (1.9) BS02 MYR N/A N/A P02768 38782206
    440504 8rgl:B (1.9) BS03 MYR N/A N/A P02768 38782206
    440505 8rgl:B (1.9) BS04 MYR N/A N/A P02768 38782206
    440506 8rgl:B (1.9) BS05 MYR N/A N/A P02768 38782206
    440507 8rgl:B (1.9) BS06 MYR N/A N/A P02768 38782206
    440508 8rgl:B (1.9) BS07 GOQ N/A N/A P02768 38782206
    440509 8rgp:1 (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440510 8rgp:1 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440511 8rgp:2 (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    440512 8rgp:3 (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440513 8rgp:3 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440514 8rgp:3 (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440515 8rgp:6 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    440516 8rgp:6 (3.0) BS02 UQ 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    440517 8rgp:9 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440518 8rgp:9 (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440519 8rgp:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    440520 8rgp:D (3.0) BS02 UQ 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    440521 8rgp:H (3.0) BS01 UQ 7.1.1.2 GO:0001666 ... P03888 38575788
    440522 8rgp:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    440523 8rgp:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    440524 8rgp:W (3.0) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    440525 8rgp:n (3.0) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    440526 8rgq:1 (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440527 8rgq:1 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440528 8rgq:2 (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    440529 8rgq:3 (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440530 8rgq:3 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440531 8rgq:3 (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440532 8rgq:6 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    440533 8rgq:9 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440534 8rgq:9 (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440535 8rgq:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    440536 8rgq:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    440537 8rgq:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    440538 8rgq:W (3.0) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    440539 8rgq:n (3.0) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    440540 8rgr:1 (2.9) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440541 8rgr:1 (2.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440542 8rgr:2 (2.9) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    440543 8rgr:3 (2.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440544 8rgr:3 (2.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440545 8rgr:3 (2.9) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440546 8rgr:6 (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    440547 8rgr:6 (2.9) BS02 UQ 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    440548 8rgr:9 (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440549 8rgr:9 (2.9) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440550 8rgr:D (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    440551 8rgr:D (2.9) BS02 UQ 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    440552 8rgr:H (2.9) BS01 UQ 7.1.1.2 GO:0001666 ... P03888 38575788
    440553 8rgr:O (2.9) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    440554 8rgr:P (2.9) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    440555 8rgr:W (2.9) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    440556 8rgr:n (2.9) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    440557 8rgs:A (1.79) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 38488731
    440558 8rgs:B (1.79) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 38488731
    440559 8rgt:1 (3.1) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440560 8rgt:1 (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    440561 8rgt:2 (3.1) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    440562 8rgt:3 (3.1) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440563 8rgt:3 (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440564 8rgt:3 (3.1) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    440565 8rgt:6 (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    440566 8rgt:9 (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440567 8rgt:9 (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    440568 8rgt:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    440569 8rgt:O (3.1) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    440570 8rgt:P (3.1) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    440571 8rgt:T (3.1) BS01 ZMP ? GO:0005654 ... Q9CR21 38575788
    440572 8rgt:W (3.1) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    440573 8rgt:n (3.1) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    440574 8rgw:A (1.88) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 38488731
    440575 8rgw:B (1.88) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 38488731
    440576 8rgy:A (2.07) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 38488731
    440577 8rgy:B (2.07) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 38488731
    440578 8rh3:A (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    440579 8rh3:B (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    440580 8rh3:B (1.96) BS02 A1H0F ? GO:0009159 ... K9TVX3 38449528
    440581 8rh3:C (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    440582 8rh3:D (1.96) BS01 A1H0F ? GO:0009159 ... K9TVX3 38449528
    440583 8rh4:A (2.52) BS01 EST N/A N/A P24046 N/A
    440584 8rh4:A (2.52) BS02 EST N/A N/A P24046 N/A
    440585 8rh4:B (2.52) BS01 EST N/A N/A P24046 N/A
    440586 8rh4:B (2.52) BS02 EST N/A N/A P24046 N/A
    440587 8rh4:C (2.52) BS01 EST N/A N/A P24046 N/A
    440588 8rh4:C (2.52) BS02 EST N/A N/A P24046 N/A
    440589 8rh4:D (2.52) BS01 EST N/A N/A P24046 N/A
    440590 8rh4:D (2.52) BS02 EST N/A N/A P24046 N/A
    440591 8rh4:E (2.52) BS01 EST N/A N/A P24046 N/A
    440592 8rh4:E (2.52) BS02 EST N/A N/A P24046 N/A
    440593 8rh7:A (2.78) BS01 EST N/A N/A P24046 N/A
    440594 8rh7:B (2.78) BS01 EST N/A N/A P24046 N/A
    440595 8rh7:C (2.78) BS01 EST N/A N/A P24046 N/A
    440596 8rh7:D (2.78) BS01 EST N/A N/A P24046 N/A
    440597 8rh7:E (2.78) BS01 EST N/A N/A P24046 N/A
    440598 8rh8:A (2.66) BS01 ABU N/A N/A P24046 N/A
    440599 8rh8:A (2.66) BS02 ABU N/A N/A P24046 N/A
    440600 8rh8:B (2.66) BS01 ABU N/A N/A P24046 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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