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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    433201 8kgb:C (2.32) BS02 GST N/A N/A C1K5M2
    Q56Y11    		 N/A
    433202 8kgb:C (2.32) BS03 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433203 8kgb:D (2.32) BS01 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433204 8kgb:D (2.32) BS02 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433205 8kgb:D (2.32) BS03 GST N/A N/A C1K5M2
    Q56Y11    		 N/A
    433206 8kgg:R (3.06) BS01 WJS N/A GO:0004930 ... O00398 39265572
    433207 8kgs:A (2.603) BS01 ANP 5.6.2.2 N/A A0A2X0THW2 38816407
    433208 8kgt:A (2.3) BS01 ADP 5.6.2.2 N/A A0A2X0THW2 38816407
    433209 8kgw:A (3.4) BS01 P2E N/A N/A Q92959 N/A
    433210 8kh3:A (2.0) BS01 VWF N/A N/A P23360 N/A
    433211 8kh4:A (3.1) BS01 CLR ? GO:0004930 ... Q8N6U8 37737235
    433212 8kh5:A (2.83) BS01 CLR ? GO:0004930 ... Q9BXC1 37737235
    433213 8kh5:A (2.83) BS02 LPS ? GO:0004930 ... Q9BXC1 37737235
    433214 8kh5:A (2.83) BS03 CLR ? GO:0004930 ... Q9BXC1 37737235
    433215 8kh6:A (1.62) BS01 VVI N/A N/A P22455 38348819
    433216 8kh7:A (1.52) BS01 VVW N/A N/A P22455 38348819
    433217 8kh8:A (1.49) BS01 VVW N/A N/A P22455 38348819
    433218 8kh9:A (1.42) BS01 VVW N/A N/A P22455 38348819
    433219 8khf:4 (3.13) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    433220 8khl:A (2.4) BS01 COA ? GO:0000287 ... Q9I562 38677288
    433221 8khl:B (2.4) BS01 COA ? GO:0000287 ... Q9I562 38677288
    433222 8khl:C (2.4) BS01 COA ? GO:0000287 ... Q9I562 38677288
    433223 8kho:A (1.45) BS01 MET 3.4.11.18 GO:0006508 ... Q6UB28 38102161
    433224 8khq:A (2.69) BS02 HIS ? N/A A0A1I5R890 38058600
    433225 8khq:A (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    433226 8khq:B (2.69) BS02 HIS ? N/A A0A1I5R890 38058600
    433227 8khq:B (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    433228 8khq:C (2.69) BS02 HIS ? N/A A0A1I5R890 38058600
    433229 8khq:C (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    433230 8khq:D (2.69) BS02 HIS ? N/A A0A1I5R890 38058600
    433231 8khq:D (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    433232 8kht:A (2.05) BS02 VY9 1.-.-.-
    1.14.11.17    		 GO:0016491 ... P9WG83 38895101
    433233 8kht:B (2.05) BS02 VY9 1.-.-.-
    1.14.11.17    		 GO:0016491 ... P9WG83 38895101
    433234 8khu:A (2.0) BS01 VX0 ? GO:0005198 ... P03147 37801325
    433235 8khu:A (2.0) BS02 VX0 ? GO:0005198 ... P03147 37801325
    433236 8khu:B (2.0) BS01 VX0 ? GO:0005198 ... P03147 37801325
    433237 8khu:C (2.0) BS02 VX0 ? GO:0005198 ... P03147 37801325
    433238 8khu:C (2.0) BS03 VX0 ? GO:0005198 ... P03147 37801325
    433239 8khu:D (2.0) BS02 VX0 ? GO:0005198 ... P03147 37801325
    433240 8khu:E (2.0) BS01 VX0 ? GO:0005198 ... P03147 37801325
    433241 8khu:E (2.0) BS02 VX0 ? GO:0005198 ... P03147 37801325
    433242 8khu:F (2.0) BS01 VX0 ? GO:0005198 ... P03147 37801325
    433243 8ki0:A (1.45) BS01 MQP ? N/A Q4K5N8 38495978
    433244 8ki0:A (1.45) BS02 MQP ? N/A Q4K5N8 38495978
    433245 8ki0:B (1.45) BS01 MQP ? N/A Q4K5N8 38495978
    433246 8ki0:B (1.45) BS02 MQP ? N/A Q4K5N8 38495978
    433247 8ki1:A (1.9) BS01 HEM ? N/A Q4K5N8 38495978
    433248 8ki1:B (1.9) BS01 HEM ? N/A Q4K5N8 38495978
    433249 8ki3:4 (2.89) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    433250 8ki3:5 (2.89) BS01 BQ1 ? GO:0015078 ... P05496 38961288
    433251 8ki3:A (2.89) BS01 ATP ? GO:0001937 ... P25705 38961288
    433252 8ki3:B (2.89) BS01 ATP ? GO:0001937 ... P25705 38961288
    433253 8ki3:C (2.89) BS01 ATP ? GO:0001937 ... P25705 38961288
    433254 8ki3:D (2.89) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 38961288
    433255 8ki3:E (2.89) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 38961288
    433256 8ki3:F (2.89) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 38961288
    433257 8ki5:A (2.01) BS01 FOH N/A N/A N/A N/A
    433258 8ki6:A (3.4) BS01 RBV N/A N/A A0A7G8JUQ9 N/A
    433259 8kib:A (1.7) BS01 NAP N/A N/A O88844 N/A
    433260 8kib:A (1.7) BS02 OAA N/A N/A O88844 N/A
    433261 8kib:A (1.7) BS03 NAP N/A N/A O88844 N/A
    433262 8kib:A (1.7) BS04 OAA N/A N/A O88844 N/A
    433263 8kib:A (1.7) BS05 OAA N/A N/A O88844 N/A
    433264 8kib:B (1.7) BS01 NAP N/A N/A O88844 N/A
    433265 8kib:B (1.7) BS02 OAA N/A N/A O88844 N/A
    433266 8kib:B (1.7) BS03 NAP N/A N/A O88844 N/A
    433267 8kib:B (1.7) BS04 OAA N/A N/A O88844 N/A
    433268 8kib:C (1.7) BS01 NAP N/A N/A O88844 N/A
    433269 8kib:C (1.7) BS02 OAA N/A N/A O88844 N/A
    433270 8kib:C (1.7) BS03 OAA N/A N/A O88844 N/A
    433271 8kib:D (1.7) BS01 NAP N/A N/A O88844 N/A
    433272 8kib:D (1.7) BS02 OAA N/A N/A O88844 N/A
    433273 8kib:D (1.7) BS03 OAA N/A N/A O88844 N/A
    433274 8kif:A (2.13) BS02 VY9 N/A GO:0016491 ... B2HKM3 38895101
    433275 8kif:B (2.13) BS02 VY9 N/A GO:0016491 ... B2HKM3 38895101
    433276 8kif:C (2.13) BS02 VY9 N/A GO:0016491 ... B2HKM3 38895101
    433277 8kif:D (2.13) BS02 VY9 N/A GO:0016491 ... B2HKM3 38895101
    433278 8kih:A (2.0) BS01 FGG N/A N/A N/A N/A
    433279 8mht:A (2.76) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    433280 8nse:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    433281 8nse:A (2.25) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    433282 8nse:A (2.25) BS04 NRG 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=1200nM, Ki=750nM
    433283 8nse:A (2.25) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    433284 8nse:B (2.25) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    433285 8nse:B (2.25) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    433286 8nse:B (2.25) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11695891
    433287 8nse:B (2.25) BS05 NRG 1.14.13.39 GO:0004517 ... P29473 11695891 BindingDB: IC50=1200nM, Ki=750nM
    433288 8odo:A (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433289 8odo:C (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433290 8odo:E (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433291 8odo:G (2.2) BS01 5GP 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433292 8odp:A (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433293 8odp:C (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433294 8odp:E (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433295 8odp:G (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    433296 8odq:B (1.65) BS01 PLP 2.8.1.7 GO:0005515 ... P9WQ69 37238602
    433297 8odq:D (1.65) BS01 PLP 2.8.1.7 GO:0005515 ... P9WQ69 37238602
    433298 8odw:A (3.07) BS01 FAD 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    433299 8odw:A (3.07) BS02 NAP 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    433300 8odw:A (3.07) BS03 GEE 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    433301 8odw:B (3.07) BS01 FAD 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    433302 8odw:B (3.07) BS02 NAP 2.3.1.39 GO:0004499 ... A0A0C5VQJ2 37216334
    433303 8oed:A (1.37) BS01 BYN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    433304 8oeg:A (1.89) BS02 VL9 3.1.4.53 GO:0004114 ... Q07343 37561958
    433305 8oeh:A (1.77) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    433306 8oeo:A (1.3) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    433307 8oeq:AP (3.3) BS02 3K5 N/A N/A A0A8H6BR69 N/A
    433308 8oeq:CJ (3.3) BS02 3K5 N/A N/A A0A8H6BR69 N/A
    433309 8oeq:D (3.3) BS02 PAR N/A N/A A0A8H6C387 N/A
    433310 8oeq:Q (3.3) BS02 PAR N/A N/A A0A8H6F0V4 N/A
    433311 8oet:A (2.11) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    433312 8oet:B (2.11) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    433313 8of1:A (1.81) BS01 NAD 1.2.1.24 GO:0000166 ... A0A2K1ICJ7 N/A
    433314 8of1:B (1.81) BS01 NAD 1.2.1.24 GO:0000166 ... A0A2K1ICJ7 N/A
    433315 8of2:A (1.48) BS01 3AY 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433316 8of2:A (1.48) BS02 NDP 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433317 8of2:B (1.48) BS01 NDP 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433318 8of2:B (1.48) BS02 3AY 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433319 8of2:C (1.48) BS01 NDP 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433320 8of2:C (1.48) BS02 3AY 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433321 8of2:D (1.48) BS01 NDP 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433322 8of2:D (1.48) BS02 3AY 1.5.1.33 GO:0016491 ... Q581W1 38043491
    433323 8of5:A (1.97) BS01 ADP 2.7.11.1 GO:0004672 ... O14965 N/A
    433324 8of7:A (1.66) BS01 GLY ? GO:0016853 ... A0A401MXE6 37305956
    433325 8of7:A (1.66) BS02 GLY ? GO:0016853 ... A0A401MXE6 37305956
    433326 8of7:A (1.66) BS03 SER ? GO:0016853 ... A0A401MXE6 37305956
    433327 8of7:B (1.66) BS01 SER ? GO:0016853 ... A0A401MXE6 37305956
    433328 8of7:B (1.66) BS02 GLY ? GO:0016853 ... A0A401MXE6 37305956
    433329 8ofa:A (1.9) BS01 TQ8 3.4.22.15 GO:0006508 ... P07711 38630165
    433330 8ofa:A (1.9) BS02 VLF 3.4.22.15 GO:0006508 ... P07711 38630165
    433331 8ofa:B (1.9) BS01 TQ8 3.4.22.15 GO:0006508 ... P07711 38630165
    433332 8ofa:C (1.9) BS01 TQ8 3.4.22.15 GO:0006508 ... P07711 38630165
    433333 8ofa:D (1.9) BS01 TQ8 3.4.22.15 GO:0006508 ... P07711 38630165
    433334 8ofa:D (1.9) BS02 VLF 3.4.22.15 GO:0006508 ... P07711 38630165
    433335 8ofe:A (1.4) BS01 VLK 3.5.1.88 GO:0005515 ... P0A6K3 38057137
    433336 8ofg:A (2.4) BS01 AMP 2.7.7.85 GO:0004016 ... Q8DP14 N/A
    433337 8ofi:A (3.6) BS01 VNZ N/A N/A N/A 38917012
    433338 8ofi:C (3.6) BS01 VNZ N/A N/A N/A 38917012
    433339 8ofk:AAA (1.713) BS01 AZA 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433340 8ofk:AAA (1.713) BS02 AZA 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433341 8ofk:BBB (1.713) BS01 AZA 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433342 8ofk:BBB (1.713) BS02 AZA 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433343 8ofk:CCC (1.713) BS01 AZA 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433344 8ofk:DDD (1.713) BS01 AZA 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433345 8ofk:DDD (1.713) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    433346 8ofl:A (2.1) BS01 HT9 4.99.1.9 GO:0004325 ... Q8Y565 37743577
    433347 8ofm:A (1.831) BS01 NAD 1.2.1.24 GO:0000166 ... A0A2K1ICJ7 N/A
    433348 8ofm:B (1.831) BS01 NAD 1.2.1.24 GO:0000166 ... A0A2K1ICJ7 N/A
    433349 8ofr:A (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433350 8ofr:B (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433351 8ofr:C (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433352 8ofr:D (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433353 8ofr:D (2.51) BS02 SLB ? GO:0007155 ... M0QUM1 38665237
    433354 8ofr:E (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433355 8ofr:F (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433356 8ofr:F (2.51) BS02 SLB ? GO:0007155 ... M0QUM1 38665237
    433357 8ofr:G (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433358 8ofr:H (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433359 8ofr:H (2.51) BS02 SLB ? GO:0007155 ... M0QUM1 38665237
    433360 8ofr:I (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433361 8ofr:J (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433362 8ofr:K (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433363 8ofr:L (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433364 8ofr:M (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433365 8ofr:N (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433366 8ofr:N (2.51) BS02 SLB ? GO:0007155 ... M0QUM1 38665237
    433367 8ofr:O (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433368 8ofr:P (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433369 8ofr:Q (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433370 8ofr:R (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433371 8ofr:S (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433372 8ofr:T (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433373 8ofr:T (2.51) BS02 SLB ? GO:0007155 ... M0QUM1 38665237
    433374 8ofr:U (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433375 8ofr:V (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433376 8ofr:W (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433377 8ofr:X (2.51) BS01 SLB ? GO:0007155 ... M0QUM1 38665237
    433378 8ofs:A (2.56) BS01 SLB ? GO:0007155 ... M0QTV3 38665237
    433379 8ofs:A (2.56) BS02 SLB ? GO:0007155 ... M0QTV3 38665237
    433380 8ofs:B (2.56) BS01 SLB ? GO:0007155 ... M0QTV3 38665237
    433381 8ofs:B (2.56) BS02 SLB ? GO:0007155 ... M0QTV3 38665237
    433382 8ofs:C (2.56) BS01 SLB ? GO:0007155 ... M0QTV3 38665237
    433383 8ofv:F (1.77) BS01 SLB ? GO:0007155 ... E5RWD1 38665237
    433384 8ofv:L (1.77) BS01 SIA ? GO:0007155 ... E5RWD1 38665237
    433385 8ofw:A (3.8) BS01 FMN 1.3.5.2 GO:0004152 ... P9WHL1 37278160
    433386 8ofw:B (3.8) BS01 FMN 1.3.5.2 GO:0004152 ... P9WHL1 37278160
    433387 8og1:A (1.58) BS01 BMA 2.4.1.223 GO:0000287 ... O43909 37828045
    433388 8og1:A (1.58) BS02 MAN 2.4.1.223 GO:0000287 ... O43909 37828045
    433389 8og2:A (2.47) BS05 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... P45481 N/A
    433390 8og3:A (2.09) BS01 FMN 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    433391 8og3:A (2.09) BS02 FMN 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    433392 8og3:B (2.09) BS01 FMN 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    433393 8og3:B (2.09) BS02 FMN 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    433394 8og4:A (2.1) BS02 UDP 2.4.1.223 GO:0000287 ... O43909 37828045
    433395 8og4:B (2.1) BS01 BMA 2.4.1.223 GO:0000287 ... O43909 37828045
    433396 8og4:B (2.1) BS03 UDP 2.4.1.223 GO:0000287 ... O43909 37828045
    433397 8og5:A (2.2) BS01 LQH 2.7.11.1 GO:0016567 ... Q9Y4B6 37465299
    433398 8og5:A (2.2) BS02 LQH 2.7.11.1 GO:0016567 ... Q9Y4B6 37465299
    433399 8og5:A (2.2) BS03 LQH 2.7.11.1 GO:0016567 ... Q9Y4B6 37465299
    433400 8og6:A (2.245) BS01 LQH 2.7.11.1 GO:0016567 ... Q9Y4B6 37465299
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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