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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    433001 8kbh:D (1.54) BS03 1SY N/A N/A P0DW58 N/A
    433002 8kbh:E (1.54) BS02 1SY N/A N/A P0DW58 N/A
    433003 8kbh:E (1.54) BS03 1SY N/A N/A P0DW58 N/A
    433004 8kbh:F (1.54) BS02 1SY N/A N/A P0DW58 N/A
    433005 8kbh:F (1.54) BS03 1SY N/A N/A P0DW58 N/A
    433006 8kbh:G (1.54) BS02 1SY N/A N/A P0DW58 N/A
    433007 8kbh:G (1.54) BS03 1SY N/A N/A P0DW58 N/A
    433008 8kbh:H (1.54) BS02 1SY N/A N/A P0DW58 N/A
    433009 8kbh:H (1.54) BS03 1SY N/A N/A P0DW58 N/A
    433010 8kbh:I (1.54) BS02 1SY N/A N/A P0DW58 N/A
    433011 8kbh:I (1.54) BS03 1SY N/A N/A P0DW58 N/A
    433012 8kbj:A (2.1) BS01 MF6 N/A N/A A0A447EB45 N/A
    433013 8kbj:B (2.1) BS01 MF6 N/A N/A A0A447EB45 N/A
    433014 8kbj:C (2.1) BS01 MF6 N/A N/A A0A447EB45 N/A
    433015 8kbj:D (2.1) BS01 MF6 N/A N/A A0A447EB45 N/A
    433016 8kbk:A (2.28) BS01 MF6 N/A N/A A0A447EB45 N/A
    433017 8kbk:A (2.28) BS02 C2E N/A N/A A0A447EB45 N/A
    433018 8kbk:B (2.28) BS01 MF6 N/A N/A A0A447EB45 N/A
    433019 8kbk:B (2.28) BS02 C2E N/A N/A A0A447EB45 N/A
    433020 8kbk:C (2.28) BS01 MF6 N/A N/A A0A447EB45 N/A
    433021 8kbk:C (2.28) BS02 C2E N/A N/A A0A447EB45 N/A
    433022 8kbk:D (2.28) BS01 C2E N/A N/A A0A447EB45 N/A
    433023 8kbk:D (2.28) BS02 MF6 N/A N/A A0A447EB45 N/A
    433024 8kbl:A (1.98) BS01 OJC N/A N/A A0A447EB45 N/A
    433025 8kbl:A (1.98) BS02 C2E N/A N/A A0A447EB45 N/A
    433026 8kbm:A (1.38) BS01 C2E N/A N/A A0A447EB45 N/A
    433027 8kbm:B (1.38) BS01 C2E N/A N/A A0A447EB45 N/A
    433028 8kcb:K (3.17) BS03 BEF N/A GO:0000786 ... Q9XFH4 38870940
    433029 8kcb:K (3.17) BS04 ADP N/A GO:0000786 ... Q9XFH4 38870940
    433030 8kcc:K (3.1) BS03 ADP N/A GO:0000786 ... Q9XFH4 38870940
    433031 8kcc:K (3.1) BS04 BEF N/A GO:0000786 ... Q9XFH4 38870940
    433032 8kci:A (3.94) BS01 ATP N/A GO:0005524 ... O15440 38844452
    433033 8kci:A (3.94) BS02 ATP N/A GO:0005524 ... O15440 38844452
    433034 8kcm:A (2.5) BS03 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    433035 8kcm:B (2.5) BS03 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 38033054
    433036 8kco:B (2.8) BS01 N60 N/A N/A P49768 N/A
    433037 8kco:C (2.8) BS01 CLR N/A N/A Q96BI3 N/A
    433038 8kco:C (2.8) BS02 CLR N/A N/A Q96BI3 N/A
    433039 8kcp:B (3.0) BS01 N9C N/A N/A P49768 N/A
    433040 8kcp:C (3.0) BS01 CLR N/A N/A Q96BI3 N/A
    433041 8kcp:C (3.0) BS02 CLR N/A N/A Q96BI3 N/A
    433042 8kcp:C (3.0) BS03 CLR N/A N/A Q96BI3 N/A
    433043 8kcs:B (2.4) BS01 Q70 N/A N/A P49768 N/A
    433044 8kcs:C (2.4) BS01 CLR N/A N/A Q96BI3 N/A
    433045 8kcs:C (2.4) BS02 CLR N/A N/A Q96BI3 N/A
    433046 8kcs:C (2.4) BS03 CLR N/A N/A Q96BI3 N/A
    433047 8kct:B (2.6) BS01 O6U N/A N/A P49768 N/A
    433048 8kct:C (2.6) BS01 CLR N/A N/A Q96BI3 N/A
    433049 8kct:C (2.6) BS02 CLR N/A N/A Q96BI3 N/A
    433050 8kct:C (2.6) BS03 CLR N/A N/A Q96BI3 N/A
    433051 8kcu:B (2.7) BS01 OL9 N/A N/A P49768 N/A
    433052 8kcu:C (2.7) BS01 CLR N/A N/A Q96BI3 N/A
    433053 8kcu:C (2.7) BS02 CLR N/A N/A Q96BI3 N/A
    433054 8kcu:C (2.7) BS03 CLR N/A N/A Q96BI3 N/A
    433055 8kcw:A (2.77) BS02 CLR ? N/A Q9NXL6 38811802
    433056 8kcw:A (2.77) BS03 CLR ? N/A Q9NXL6 38811802
    433057 8kcw:C (2.77) BS02 CLR ? N/A Q9NXL6 38811802
    433058 8kcw:C (2.77) BS03 CLR ? N/A Q9NXL6 38811802
    433059 8kcz:A (2.3) BS01 FAD 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    433060 8kcz:A (2.3) BS02 ANB 1.3.99.4 GO:0000166 ... Q9RA02 N/A
    433061 8kd0:A (1.675) BS01 GAL N/A GO:0015768 ... Q4FMK2 39261732
    433062 8kde:A (2.6) BS01 CLA N/A GO:0005506 ... P07753 38890314
    433063 8kde:A (2.6) BS02 PHO N/A GO:0005506 ... P07753 38890314
    433064 8kde:A (2.6) BS03 PHO N/A GO:0005506 ... P07753 38890314
    433065 8kde:A (2.6) BS04 CLA N/A GO:0005506 ... P07753 38890314
    433066 8kde:A (2.6) BS05 BCT N/A GO:0005506 ... P07753 38890314
    433067 8kde:A (2.6) BS07 CLA N/A GO:0005506 ... P07753 38890314
    433068 8kde:A (2.6) BS08 CLA N/A GO:0005506 ... P07753 38890314
    433069 8kde:A (2.6) BS09 CLA N/A GO:0005506 ... P07753 38890314
    433070 8kde:B (2.6) BS01 CLA N/A GO:0009507 ... P37255 38890314
    433071 8kde:B (2.6) BS02 CLA N/A GO:0009507 ... P37255 38890314
    433072 8kde:B (2.6) BS03 CLA N/A GO:0009507 ... P37255 38890314
    433073 8kde:B (2.6) BS04 CLA N/A GO:0009507 ... P37255 38890314
    433074 8kde:B (2.6) BS05 CLA N/A GO:0009507 ... P37255 38890314
    433075 8kde:B (2.6) BS06 CLA N/A GO:0009507 ... P37255 38890314
    433076 8kde:B (2.6) BS07 CLA N/A GO:0009507 ... P37255 38890314
    433077 8kde:B (2.6) BS08 CLA N/A GO:0009507 ... P37255 38890314
    433078 8kde:B (2.6) BS09 CLA N/A GO:0009507 ... P37255 38890314
    433079 8kde:B (2.6) BS10 CLA N/A GO:0009507 ... P37255 38890314
    433080 8kde:B (2.6) BS11 CLA N/A GO:0009507 ... P37255 38890314
    433081 8kde:B (2.6) BS12 CLA N/A GO:0009507 ... P37255 38890314
    433082 8kde:B (2.6) BS13 CLA N/A GO:0009507 ... P37255 38890314
    433083 8kde:B (2.6) BS14 CLA N/A GO:0009507 ... P37255 38890314
    433084 8kde:B (2.6) BS15 CLA N/A GO:0009507 ... P37255 38890314
    433085 8kde:C (2.6) BS01 CLA N/A GO:0005737 ... P10898 38890314
    433086 8kde:C (2.6) BS02 CLA N/A GO:0005737 ... P10898 38890314
    433087 8kde:C (2.6) BS03 CLA N/A GO:0005737 ... P10898 38890314
    433088 8kde:C (2.6) BS04 CLA N/A GO:0005737 ... P10898 38890314
    433089 8kde:C (2.6) BS05 CLA N/A GO:0005737 ... P10898 38890314
    433090 8kde:C (2.6) BS06 CLA N/A GO:0005737 ... P10898 38890314
    433091 8kde:C (2.6) BS07 CLA N/A GO:0005737 ... P10898 38890314
    433092 8kde:C (2.6) BS08 CLA N/A GO:0005737 ... P10898 38890314
    433093 8kde:C (2.6) BS09 CLA N/A GO:0005737 ... P10898 38890314
    433094 8kde:C (2.6) BS10 CLA N/A GO:0005737 ... P10898 38890314
    433095 8kde:C (2.6) BS11 CLA N/A GO:0005737 ... P10898 38890314
    433096 8kde:C (2.6) BS12 CLA N/A GO:0005737 ... P10898 38890314
    433097 8kde:C (2.6) BS13 CLA N/A GO:0005737 ... P10898 38890314
    433098 8kde:D (2.6) BS01 CLA N/A GO:0005506 ... P06007 38890314
    433099 8kde:D (2.6) BS02 CLA N/A GO:0005506 ... P06007 38890314
    433100 8kde:D (2.6) BS03 CLA N/A GO:0005506 ... P06007 38890314
    433101 8kde:D (2.6) BS04 CLA N/A GO:0005506 ... P06007 38890314
    433102 8kde:D (2.6) BS05 PHO N/A GO:0005506 ... P06007 38890314
    433103 8kde:D (2.6) BS06 PHO N/A GO:0005506 ... P06007 38890314
    433104 8kde:D (2.6) BS07 VTQ N/A GO:0005506 ... P06007 38890314
    433105 8kde:D (2.6) BS08 BCT N/A GO:0005506 ... P06007 38890314
    433106 8kde:D (2.6) BS10 CLA N/A GO:0005506 ... P06007 38890314
    433107 8kde:E (2.6) BS01 HEM N/A GO:0005506 ... P48268 38890314
    433108 8kde:F (2.6) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    433109 8kde:F (2.6) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    433110 8kde:H (2.6) BS01 CLA N/A GO:0009507 ... P22666 38890314
    433111 8kde:H (2.6) BS02 CLA N/A GO:0009507 ... P22666 38890314
    433112 8kde:I (2.6) BS01 CLA N/A GO:0005737 ... P59763 38890314
    433113 8kde:K (2.6) BS01 CLA N/A GO:0005737 ... P18263 38890314
    433114 8kde:X (2.6) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    433115 8kdu:A (2.3) BS01 I4Q N/A N/A P00760 N/A
    433116 8kdu:A (2.3) BS02 JNR N/A N/A P00760 N/A
    433117 8ke1:A (2.50082) BS01 ANP 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433118 8ke1:A (2.50082) BS02 6CV 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433119 8ke2:A (2.1964) BS02 ANP 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433120 8ke2:A (2.1964) BS03 FX9 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433121 8ke3:A (1.89981) BS01 ANP 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433122 8ke3:A (1.89981) BS03 FXC 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433123 8ke4:A (1.75051) BS01 ANP 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433124 8ke4:A (1.75051) BS03 FXF 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433125 8ke5:A (1.90007) BS02 ANP 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433126 8ke5:A (1.90007) BS03 FXL 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433127 8ke6:A (1.89571) BS01 ANP 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433128 8ke6:A (1.89571) BS03 FCL 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    433129 8kei:B (3.56) BS01 HEM 1.-.-.- GO:0005515 ... P04839 N/A
    433130 8kei:B (3.56) BS02 HEM 1.-.-.- GO:0005515 ... P04839 N/A
    433131 8kei:B (3.56) BS03 LBN 1.-.-.- GO:0005515 ... P04839 N/A
    433132 8kei:D (3.56) BS01 HEM ? N/A Q9BQA9 N/A
    433133 8kf1:B (3.3) BS01 VW6 N/A N/A P05067 N/A
    433134 8kf1:C (3.3) BS01 VW6 N/A N/A P05067 N/A
    433135 8kf1:F (3.3) BS01 VW6 N/A N/A P05067 N/A
    433136 8kf1:H (3.3) BS01 VW6 N/A N/A P05067 N/A
    433137 8kf1:J (3.3) BS01 VW6 N/A N/A P05067 N/A
    433138 8kf1:J (3.3) BS02 VW6 N/A N/A P05067 N/A
    433139 8kfh:A (2.27) BS01 HNN N/A N/A P02185 N/A
    433140 8kfh:B (2.27) BS01 HNN N/A N/A P02185 N/A
    433141 8kfi:A (2.37) BS01 HNN N/A N/A P02185 N/A
    433142 8kfi:B (2.37) BS01 HNN N/A N/A P02185 N/A
    433143 8kfj:A (1.9) BS01 HNN N/A N/A P02185 N/A
    433144 8kfj:B (1.9) BS01 HNN N/A N/A P02185 N/A
    433145 8kfo:B (3.6) BS01 OP6 N/A N/A P02769 N/A
    433146 8kfq:A (3.22) BS01 VUZ N/A N/A P00533 N/A
    433147 8kfx:R (2.96) BS01 OS9 ? GO:0004930 ... P51685 38306437
    433148 8kfy:R (3.06) BS01 OXF ? GO:0004930 ... P51685 38306437
    433149 8kg2:A (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433150 8kg2:B (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433151 8kg2:C (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433152 8kg2:D (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433153 8kg2:E (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433154 8kg2:F (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433155 8kg2:G (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433156 8kg2:H (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433157 8kg2:I (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433158 8kg2:J (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433159 8kg2:K (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433160 8kg2:L (3.1) BS01 ADP 3.6.4.6 N/A P55072 N/A
    433161 8kg5:A (3.17) BS01 336 N/A N/A P03420
    P10104    		 38853183
    433162 8kg5:A (3.17) BS02 336 N/A N/A P03420
    P10104    		 38853183
    433163 8kg5:B (3.17) BS01 336 N/A N/A P03420
    P10104    		 38853183
    433164 8kg5:B (3.17) BS02 336 N/A N/A P03420
    P10104    		 38853183
    433165 8kg5:C (3.17) BS01 336 N/A N/A P03420
    P10104    		 38853183
    433166 8kg5:C (3.17) BS02 336 N/A N/A P03420
    P10104    		 38853183
    433167 8kg6:2 (3.07) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    433168 8kg6:2 (3.07) BS04 AGS 3.6.4.12 GO:0000727 ... P29469 37730685
    433169 8kg6:3 (3.07) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    433170 8kg6:3 (3.07) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    433171 8kg6:4 (3.07) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    433172 8kg6:5 (3.07) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    433173 8kg6:5 (3.07) BS04 AGS 3.6.4.12 GO:0000727 ... P29496 37730685
    433174 8kg6:6 (3.07) BS03 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    433175 8kg6:6 (3.07) BS05 AGS 3.6.4.12 GO:0000727 ... P53091 37730685
    433176 8kg6:7 (3.07) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    433177 8kg8:2 (4.23) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    433178 8kg8:2 (4.23) BS04 AGS 3.6.4.12 GO:0000727 ... P29469 37730685
    433179 8kg8:3 (4.23) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    433180 8kg8:3 (4.23) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    433181 8kg8:4 (4.23) BS03 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    433182 8kg8:5 (4.23) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    433183 8kg8:5 (4.23) BS04 AGS 3.6.4.12 GO:0000727 ... P29496 37730685
    433184 8kg8:6 (4.23) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    433185 8kg8:6 (4.23) BS04 AGS 3.6.4.12 GO:0000727 ... P53091 37730685
    433186 8kg8:7 (4.23) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    433187 8kg9:2 (4.52) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    433188 8kg9:2 (4.52) BS04 AGS 3.6.4.12 GO:0000727 ... P29469 37730685
    433189 8kg9:3 (4.52) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    433190 8kg9:3 (4.52) BS04 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    433191 8kg9:5 (4.52) BS03 AGS 3.6.4.12 GO:0000727 ... P29496 37730685
    433192 8kg9:6 (4.52) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    433193 8kg9:7 (4.52) BS04 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    433194 8kgb:A (2.32) BS01 GST N/A N/A C1K5M2
    Q56Y11    		 N/A
    433195 8kgb:A (2.32) BS02 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433196 8kgb:A (2.32) BS03 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433197 8kgb:B (2.32) BS01 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433198 8kgb:B (2.32) BS02 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433199 8kgb:B (2.32) BS03 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    433200 8kgb:C (2.32) BS01 IPE N/A N/A C1K5M2
    Q56Y11    		 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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