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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    426201 8iwh:A (2.68) BS05 PHO 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426202 8iwh:A (2.68) BS06 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426203 8iwh:A (2.68) BS07 BCT 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426204 8iwh:A (2.68) BS08 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426205 8iwh:B (2.68) BS01 CLA ? GO:0009507 ... A0T0P5 37878698
    426206 8iwh:B (2.68) BS02 CLA ? GO:0009507 ... A0T0P5 37878698
    426207 8iwh:B (2.68) BS03 CLA ? GO:0009507 ... A0T0P5 37878698
    426208 8iwh:B (2.68) BS04 CLA ? GO:0009507 ... A0T0P5 37878698
    426209 8iwh:B (2.68) BS05 CLA ? GO:0009507 ... A0T0P5 37878698
    426210 8iwh:B (2.68) BS06 CLA ? GO:0009507 ... A0T0P5 37878698
    426211 8iwh:B (2.68) BS07 CLA ? GO:0009507 ... A0T0P5 37878698
    426212 8iwh:B (2.68) BS08 CLA ? GO:0009507 ... A0T0P5 37878698
    426213 8iwh:B (2.68) BS09 CLA ? GO:0009507 ... A0T0P5 37878698
    426214 8iwh:B (2.68) BS10 CLA ? GO:0009507 ... A0T0P5 37878698
    426215 8iwh:B (2.68) BS11 CLA ? GO:0009507 ... A0T0P5 37878698
    426216 8iwh:B (2.68) BS12 CLA ? GO:0009507 ... A0T0P5 37878698
    426217 8iwh:B (2.68) BS13 CLA ? GO:0009507 ... A0T0P5 37878698
    426218 8iwh:B (2.68) BS14 CLA ? GO:0009507 ... A0T0P5 37878698
    426219 8iwh:B (2.68) BS15 CLA ? GO:0009507 ... A0T0P5 37878698
    426220 8iwh:C (2.68) BS01 OEX ? GO:0005737 ... A0T0T1 37878698
    426221 8iwh:C (2.68) BS02 CLA ? GO:0005737 ... A0T0T1 37878698
    426222 8iwh:C (2.68) BS03 CLA ? GO:0005737 ... A0T0T1 37878698
    426223 8iwh:C (2.68) BS04 CLA ? GO:0005737 ... A0T0T1 37878698
    426224 8iwh:C (2.68) BS05 CLA ? GO:0005737 ... A0T0T1 37878698
    426225 8iwh:C (2.68) BS06 CLA ? GO:0005737 ... A0T0T1 37878698
    426226 8iwh:C (2.68) BS07 CLA ? GO:0005737 ... A0T0T1 37878698
    426227 8iwh:C (2.68) BS08 CLA ? GO:0005737 ... A0T0T1 37878698
    426228 8iwh:C (2.68) BS09 CLA ? GO:0005737 ... A0T0T1 37878698
    426229 8iwh:C (2.68) BS10 CLA ? GO:0005737 ... A0T0T1 37878698
    426230 8iwh:C (2.68) BS11 CLA ? GO:0005737 ... A0T0T1 37878698
    426231 8iwh:C (2.68) BS12 CLA ? GO:0005737 ... A0T0T1 37878698
    426232 8iwh:C (2.68) BS13 CLA ? GO:0005737 ... A0T0T1 37878698
    426233 8iwh:C (2.68) BS14 CLA ? GO:0005737 ... A0T0T1 37878698
    426234 8iwh:D (2.68) BS01 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426235 8iwh:D (2.68) BS02 PHO 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426236 8iwh:D (2.68) BS03 PHO 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426237 8iwh:D (2.68) BS04 BCT 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426238 8iwh:D (2.68) BS06 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426239 8iwh:D (2.68) BS07 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426240 8iwh:D (2.68) BS08 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426241 8iwh:E (2.68) BS01 HEM ? GO:0005506 ... A0T0U2 37878698
    426242 8iwh:F (2.68) BS01 HEM ? GO:0005506 ... A0T0U1 37878698
    426243 8iwh:H (2.68) BS01 CLA ? GO:0009507 ... A0T0P8 37878698
    426244 8iwh:H (2.68) BS02 CLA ? GO:0009507 ... A0T0P8 37878698
    426245 8iwh:K (2.68) BS01 CLA ? GO:0005737 ... A0T0S8 37878698
    426246 8iwh:K (2.68) BS02 CLA ? GO:0005737 ... A0T0S8 37878698
    426247 8iwh:V (2.68) BS01 HEM ? GO:0005506 ... A0T0N2 37878698
    426248 8iwh:W (2.68) BS01 CLA ? N/A B8C8Y3 37878698
    426249 8iwh:Z (2.68) BS01 CLA ? GO:0009523 ... A0T0T3 37878698
    426250 8iwh:a (2.68) BS01 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426251 8iwh:a (2.68) BS02 BCT 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426252 8iwh:a (2.68) BS03 OEX 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426253 8iwh:a (2.68) BS04 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426254 8iwh:a (2.68) BS05 PHO 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426255 8iwh:a (2.68) BS06 PHO 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426256 8iwh:a (2.68) BS07 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    426257 8iwh:b (2.68) BS01 CLA ? GO:0009507 ... A0T0P5 37878698
    426258 8iwh:b (2.68) BS02 CLA ? GO:0009507 ... A0T0P5 37878698
    426259 8iwh:b (2.68) BS03 CLA ? GO:0009507 ... A0T0P5 37878698
    426260 8iwh:b (2.68) BS04 CLA ? GO:0009507 ... A0T0P5 37878698
    426261 8iwh:b (2.68) BS05 CLA ? GO:0009507 ... A0T0P5 37878698
    426262 8iwh:b (2.68) BS06 CLA ? GO:0009507 ... A0T0P5 37878698
    426263 8iwh:b (2.68) BS07 CLA ? GO:0009507 ... A0T0P5 37878698
    426264 8iwh:b (2.68) BS08 CLA ? GO:0009507 ... A0T0P5 37878698
    426265 8iwh:b (2.68) BS09 CLA ? GO:0009507 ... A0T0P5 37878698
    426266 8iwh:b (2.68) BS10 CLA ? GO:0009507 ... A0T0P5 37878698
    426267 8iwh:b (2.68) BS11 CLA ? GO:0009507 ... A0T0P5 37878698
    426268 8iwh:b (2.68) BS12 CLA ? GO:0009507 ... A0T0P5 37878698
    426269 8iwh:b (2.68) BS13 CLA ? GO:0009507 ... A0T0P5 37878698
    426270 8iwh:b (2.68) BS14 CLA ? GO:0009507 ... A0T0P5 37878698
    426271 8iwh:b (2.68) BS15 CLA ? GO:0009507 ... A0T0P5 37878698
    426272 8iwh:c (2.68) BS01 CLA ? GO:0005737 ... A0T0T1 37878698
    426273 8iwh:c (2.68) BS02 CLA ? GO:0005737 ... A0T0T1 37878698
    426274 8iwh:c (2.68) BS03 CLA ? GO:0005737 ... A0T0T1 37878698
    426275 8iwh:c (2.68) BS04 CLA ? GO:0005737 ... A0T0T1 37878698
    426276 8iwh:c (2.68) BS05 CLA ? GO:0005737 ... A0T0T1 37878698
    426277 8iwh:c (2.68) BS06 CLA ? GO:0005737 ... A0T0T1 37878698
    426278 8iwh:c (2.68) BS07 CLA ? GO:0005737 ... A0T0T1 37878698
    426279 8iwh:c (2.68) BS08 CLA ? GO:0005737 ... A0T0T1 37878698
    426280 8iwh:c (2.68) BS09 CLA ? GO:0005737 ... A0T0T1 37878698
    426281 8iwh:c (2.68) BS10 CLA ? GO:0005737 ... A0T0T1 37878698
    426282 8iwh:c (2.68) BS11 CLA ? GO:0005737 ... A0T0T1 37878698
    426283 8iwh:c (2.68) BS12 CLA ? GO:0005737 ... A0T0T1 37878698
    426284 8iwh:c (2.68) BS13 CLA ? GO:0005737 ... A0T0T1 37878698
    426285 8iwh:c (2.68) BS14 OEX ? GO:0005737 ... A0T0T1 37878698
    426286 8iwh:d (2.68) BS01 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426287 8iwh:d (2.68) BS02 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426288 8iwh:d (2.68) BS04 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426289 8iwh:d (2.68) BS05 BCT 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426290 8iwh:d (2.68) BS06 PHO 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426291 8iwh:d (2.68) BS07 PHO 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    426292 8iwh:e (2.68) BS01 HEM ? GO:0005506 ... A0T0U2 37878698
    426293 8iwh:f (2.68) BS01 HEM ? GO:0005506 ... A0T0U1 37878698
    426294 8iwh:h (2.68) BS01 CLA ? GO:0009507 ... A0T0P8 37878698
    426295 8iwh:h (2.68) BS02 CLA ? GO:0009507 ... A0T0P8 37878698
    426296 8iwh:k (2.68) BS01 CLA ? GO:0005737 ... A0T0S8 37878698
    426297 8iwh:k (2.68) BS02 CLA ? GO:0005737 ... A0T0S8 37878698
    426298 8iwh:v (2.68) BS01 HEM ? GO:0005506 ... A0T0N2 37878698
    426299 8iwh:w (2.68) BS01 CLA ? N/A B8C8Y3 37878698
    426300 8iwm:R (3.17) BS01 PEA ? GO:0001594 ... Q5QD04 37225986
    426301 8iwn:A (3.0) BS01 ATP ? GO:0005524 ... Q84TH5 N/A
    426302 8iwn:A (3.0) BS02 ATP ? GO:0005524 ... Q84TH5 N/A
    426303 8iwn:C (3.0) BS01 ATP ? GO:0005524 ... Q84TH5 N/A
    426304 8iwn:C (3.0) BS02 ATP ? GO:0005524 ... Q84TH5 N/A
    426305 8iwo:A (3.09) BS01 46E ? GO:0005886 ... Q5ICN3 37884653
    426306 8iwo:B (3.09) BS01 46E ? GO:0005886 ... Q5ICN3 37884653
    426307 8iwr:A (3.52) BS02 ACP 7.2.2.10 GO:0000139 ... P98194 37258749
    426308 8iws:A (3.42) BS03 BEF 7.2.2.10 GO:0000139 ... P98194 37258749
    426309 8iwt:A (3.25) BS01 BEF 7.2.2.10 GO:0000139 ... P98194 37258749
    426310 8iwu:A (3.31) BS02 ALF 7.2.2.10 GO:0000139 ... P98194 37258749
    426311 8iww:A (3.71) BS02 ADP 7.2.2.10 GO:0000139 ... P98194 37258749
    426312 8iwx:G (2.59) BS01 CHL ? GO:0009765 ... P12333 37653340
    426313 8iwx:G (2.59) BS02 CLA ? GO:0009765 ... P12333 37653340
    426314 8iwx:G (2.59) BS03 CLA ? GO:0009765 ... P12333 37653340
    426315 8iwx:G (2.59) BS04 CHL ? GO:0009765 ... P12333 37653340
    426316 8iwx:G (2.59) BS05 CHL ? GO:0009765 ... P12333 37653340
    426317 8iwx:G (2.59) BS06 CHL ? GO:0009765 ... P12333 37653340
    426318 8iwx:G (2.59) BS07 CHL ? GO:0009765 ... P12333 37653340
    426319 8iwx:G (2.59) BS08 CHL ? GO:0009765 ... P12333 37653340
    426320 8iwx:G (2.59) BS09 CLA ? GO:0009765 ... P12333 37653340
    426321 8iwx:G (2.59) BS10 CLA ? GO:0009765 ... P12333 37653340
    426322 8iwx:G (2.59) BS11 CLA ? GO:0009765 ... P12333 37653340
    426323 8iwx:G (2.59) BS12 CLA ? GO:0009765 ... P12333 37653340
    426324 8iwx:G (2.59) BS13 CLA ? GO:0009765 ... P12333 37653340
    426325 8iwx:G (2.59) BS14 CHL ? GO:0009765 ... P12333 37653340
    426326 8iwx:N (2.59) BS01 CHL ? GO:0009765 ... P12333 37653340
    426327 8iwx:N (2.59) BS02 CLA ? GO:0009765 ... P12333 37653340
    426328 8iwx:N (2.59) BS03 CLA ? GO:0009765 ... P12333 37653340
    426329 8iwx:N (2.59) BS04 CLA ? GO:0009765 ... P12333 37653340
    426330 8iwx:N (2.59) BS05 CHL ? GO:0009765 ... P12333 37653340
    426331 8iwx:N (2.59) BS06 CHL ? GO:0009765 ... P12333 37653340
    426332 8iwx:N (2.59) BS07 CHL ? GO:0009765 ... P12333 37653340
    426333 8iwx:N (2.59) BS08 CHL ? GO:0009765 ... P12333 37653340
    426334 8iwx:N (2.59) BS09 CHL ? GO:0009765 ... P12333 37653340
    426335 8iwx:N (2.59) BS10 CLA ? GO:0009765 ... P12333 37653340
    426336 8iwx:N (2.59) BS11 CLA ? GO:0009765 ... P12333 37653340
    426337 8iwx:N (2.59) BS12 CLA ? GO:0009765 ... P12333 37653340
    426338 8iwx:N (2.59) BS13 CLA ? GO:0009765 ... P12333 37653340
    426339 8iwx:N (2.59) BS14 CLA ? GO:0009765 ... P12333 37653340
    426340 8iwx:N (2.59) BS15 CHL ? GO:0009765 ... P12333 37653340
    426341 8iwx:N (2.59) BS16 CHL ? GO:0009765 ... P12333 37653340
    426342 8iwx:N (2.59) BS17 CLA ? GO:0009765 ... P12333 37653340
    426343 8iwx:Y (2.59) BS01 CHL ? GO:0009765 ... P12333 37653340
    426344 8iwx:Y (2.59) BS02 CHL ? GO:0009765 ... P12333 37653340
    426345 8iwx:Y (2.59) BS03 CHL ? GO:0009765 ... P12333 37653340
    426346 8iwx:Y (2.59) BS04 CLA ? GO:0009765 ... P12333 37653340
    426347 8iwx:Y (2.59) BS05 CLA ? GO:0009765 ... P12333 37653340
    426348 8iwx:Y (2.59) BS06 CLA ? GO:0009765 ... P12333 37653340
    426349 8iwx:Y (2.59) BS07 CHL ? GO:0009765 ... P12333 37653340
    426350 8iwx:Y (2.59) BS08 CHL ? GO:0009765 ... P12333 37653340
    426351 8iwx:Y (2.59) BS09 CHL ? GO:0009765 ... P12333 37653340
    426352 8iwx:Y (2.59) BS10 CHL ? GO:0009765 ... P12333 37653340
    426353 8iwx:Y (2.59) BS11 CHL ? GO:0009765 ... P12333 37653340
    426354 8iwx:Y (2.59) BS12 CLA ? GO:0009765 ... P12333 37653340
    426355 8iwx:Y (2.59) BS13 CLA ? GO:0009765 ... P12333 37653340
    426356 8iwx:Y (2.59) BS14 CLA ? GO:0009765 ... P12333 37653340
    426357 8iwx:Y (2.59) BS15 CLA ? GO:0009765 ... P12333 37653340
    426358 8iwx:Y (2.59) BS16 CLA ? GO:0009765 ... P12333 37653340
    426359 8iwy:G (2.68) BS01 CHL ? GO:0009765 ... P12333 37653340
    426360 8iwy:G (2.68) BS02 CLA ? GO:0009765 ... P12333 37653340
    426361 8iwy:G (2.68) BS03 CLA ? GO:0009765 ... P12333 37653340
    426362 8iwy:G (2.68) BS04 CHL ? GO:0009765 ... P12333 37653340
    426363 8iwy:G (2.68) BS05 CHL ? GO:0009765 ... P12333 37653340
    426364 8iwy:G (2.68) BS06 CHL ? GO:0009765 ... P12333 37653340
    426365 8iwy:G (2.68) BS07 CHL ? GO:0009765 ... P12333 37653340
    426366 8iwy:G (2.68) BS08 CHL ? GO:0009765 ... P12333 37653340
    426367 8iwy:G (2.68) BS09 CLA ? GO:0009765 ... P12333 37653340
    426368 8iwy:G (2.68) BS10 CLA ? GO:0009765 ... P12333 37653340
    426369 8iwy:G (2.68) BS11 CLA ? GO:0009765 ... P12333 37653340
    426370 8iwy:G (2.68) BS12 CLA ? GO:0009765 ... P12333 37653340
    426371 8iwy:G (2.68) BS13 CLA ? GO:0009765 ... P12333 37653340
    426372 8iwy:G (2.68) BS14 CHL ? GO:0009765 ... P12333 37653340
    426373 8iwy:N (2.68) BS01 CHL ? GO:0009765 ... P12333 37653340
    426374 8iwy:N (2.68) BS02 CHL ? GO:0009765 ... P12333 37653340
    426375 8iwy:N (2.68) BS03 CLA ? GO:0009765 ... P12333 37653340
    426376 8iwy:N (2.68) BS04 CLA ? GO:0009765 ... P12333 37653340
    426377 8iwy:N (2.68) BS05 CHL ? GO:0009765 ... P12333 37653340
    426378 8iwy:N (2.68) BS06 CHL ? GO:0009765 ... P12333 37653340
    426379 8iwy:N (2.68) BS07 CHL ? GO:0009765 ... P12333 37653340
    426380 8iwy:N (2.68) BS08 CHL ? GO:0009765 ... P12333 37653340
    426381 8iwy:N (2.68) BS09 CHL ? GO:0009765 ... P12333 37653340
    426382 8iwy:N (2.68) BS10 CLA ? GO:0009765 ... P12333 37653340
    426383 8iwy:N (2.68) BS11 CLA ? GO:0009765 ... P12333 37653340
    426384 8iwy:N (2.68) BS12 CLA ? GO:0009765 ... P12333 37653340
    426385 8iwy:N (2.68) BS13 CLA ? GO:0009765 ... P12333 37653340
    426386 8iwy:N (2.68) BS14 CLA ? GO:0009765 ... P12333 37653340
    426387 8iwy:Y (2.68) BS01 CHL ? GO:0009765 ... P12333 37653340
    426388 8iwy:Y (2.68) BS02 CLA ? GO:0009765 ... P12333 37653340
    426389 8iwy:Y (2.68) BS03 CLA ? GO:0009765 ... P12333 37653340
    426390 8iwy:Y (2.68) BS04 CLA ? GO:0009765 ... P12333 37653340
    426391 8iwy:Y (2.68) BS05 CHL ? GO:0009765 ... P12333 37653340
    426392 8iwy:Y (2.68) BS06 CHL ? GO:0009765 ... P12333 37653340
    426393 8iwy:Y (2.68) BS07 CHL ? GO:0009765 ... P12333 37653340
    426394 8iwy:Y (2.68) BS08 CHL ? GO:0009765 ... P12333 37653340
    426395 8iwy:Y (2.68) BS09 CHL ? GO:0009765 ... P12333 37653340
    426396 8iwy:Y (2.68) BS10 CLA ? GO:0009765 ... P12333 37653340
    426397 8iwy:Y (2.68) BS11 CLA ? GO:0009765 ... P12333 37653340
    426398 8iwy:Y (2.68) BS12 CLA ? GO:0009765 ... P12333 37653340
    426399 8iwy:Y (2.68) BS13 CLA ? GO:0009765 ... P12333 37653340
    426400 8iwy:Y (2.68) BS14 CLA ? GO:0009765 ... P12333 37653340
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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