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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    424001 8ipt:C (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    424002 8ipt:D (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    424003 8ipt:D (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37144855
    424004 8ipt:E (3.5) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    424005 8ipt:E (3.5) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37144855
    424006 8ipw:A (2.35) BS01 AR6 ? N/A Q5ZSJ1 N/A
    424007 8ipw:B (2.35) BS01 AR6 ? N/A Q5ZSJ1 N/A
    424008 8ipx:w (4.3) BS02 GTP ? GO:0003723 ... Q13823 37491604
    424009 8ipy:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    424010 8iq0:M (1.88) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    424011 8iq1:B (1.8) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    424012 8iq1:E (1.8) BS03 H2S 1.15.1.1 GO:0000209 ... P00442 37421623
    424013 8iq4:R (2.7) BS01 87Q ? GO:0004930 ... P43088 38065938
    424014 8iq6:R (3.4) BS01 7WT ? GO:0004930 ... P43088 38065938
    424015 8iq9:A (1.58) BS01 GCU ? N/A A0A6M3YLW2 38349137
    424016 8iq9:A (1.58) BS02 BGC ? N/A A0A6M3YLW2 38349137
    424017 8iq9:A (1.58) BS03 GLC ? N/A A0A6M3YLW2 38349137
    424018 8iq9:A (1.58) BS04 BGC ? N/A A0A6M3YLW2 38349137
    424019 8iq9:A (1.58) BS05 GLC ? N/A A0A6M3YLW2 38349137
    424020 8iq9:A (1.58) BS06 BGC ? N/A A0A6M3YLW2 38349137
    424021 8iq9:A (1.58) BS07 BMA ? N/A A0A6M3YLW2 38349137
    424022 8iq9:A (1.58) BS08 GCU ? N/A A0A6M3YLW2 38349137
    424023 8iq9:B (1.58) BS01 BGC ? N/A A0A6M3YLW2 38349137
    424024 8iq9:B (1.58) BS02 GCU ? N/A A0A6M3YLW2 38349137
    424025 8iq9:B (1.58) BS03 BGC ? N/A A0A6M3YLW2 38349137
    424026 8iq9:B (1.58) BS04 GLC ? N/A A0A6M3YLW2 38349137
    424027 8iq9:B (1.58) BS05 BGC ? N/A A0A6M3YLW2 38349137
    424028 8iq9:B (1.58) BS06 GLC ? N/A A0A6M3YLW2 38349137
    424029 8iq9:B (1.58) BS07 BMA ? N/A A0A6M3YLW2 38349137
    424030 8iq9:B (1.58) BS08 GCU ? N/A A0A6M3YLW2 38349137
    424031 8iq9:C (1.58) BS01 GLC ? N/A A0A6M3YLW2 38349137
    424032 8iq9:C (1.58) BS02 BGC ? N/A A0A6M3YLW2 38349137
    424033 8iq9:C (1.58) BS03 GLC ? N/A A0A6M3YLW2 38349137
    424034 8iq9:C (1.58) BS04 BMA ? N/A A0A6M3YLW2 38349137
    424035 8iq9:C (1.58) BS05 GCU ? N/A A0A6M3YLW2 38349137
    424036 8iq9:C (1.58) BS06 BGC ? N/A A0A6M3YLW2 38349137
    424037 8iq9:C (1.58) BS07 GLC ? N/A A0A6M3YLW2 38349137
    424038 8iqd:A (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    424039 8iqd:B (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    424040 8iqd:C (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    424041 8iqd:D (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    424042 8iqi:A (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424043 8iqi:B (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424044 8iqi:B (3.32) BS03 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424045 8iqi:C (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424046 8iqi:C (3.32) BS03 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424047 8iqi:D (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424048 8iqi:D (3.32) BS03 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424049 8iqi:E (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424050 8iqi:F (3.32) BS02 ANP ? GO:0004386 ... A0A0C5B022 37587714
    424051 8iqn:A (1.639) BS01 SRF ? GO:0003677 ... P11473 N/A
    424052 8iqr:H (2.35) BS01 HZA N/A GO:0004674 ... N/A N/A
    424053 8iqr:h (2.35) BS01 HZA N/A GO:0004674 ... N/A N/A
    424054 8iqt:A (1.745) BS01 SV0 ? GO:0003677 ... P11473 N/A
    424055 8iqu:A (2.64) BS01 649 6.2.1.57 GO:0005524 ... P9WQ47 37522751
    424056 8ir1:w (3.3) BS02 GTP ? GO:0003723 ... Q13823 37491604
    424057 8ir3:w (3.5) BS02 GTP ? GO:0003723 ... Q13823 37491604
    424058 8ir5:A (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424059 8ir5:A (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424060 8ir5:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424061 8ir5:A (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424062 8ir5:A (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424063 8ir5:A (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424064 8ir5:A (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424065 8ir5:A (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424066 8ir5:B (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424067 8ir5:B (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424068 8ir5:B (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424069 8ir5:B (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424070 8ir5:B (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424071 8ir5:B (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424072 8ir5:B (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424073 8ir5:B (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424074 8ir5:B (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424075 8ir5:B (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424076 8ir5:B (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424077 8ir5:B (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424078 8ir5:B (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424079 8ir5:B (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424080 8ir5:B (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424081 8ir5:B (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424082 8ir5:C (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424083 8ir5:C (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424084 8ir5:C (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424085 8ir5:C (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424086 8ir5:C (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424087 8ir5:C (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424088 8ir5:C (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424089 8ir5:C (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424090 8ir5:C (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424091 8ir5:C (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424092 8ir5:C (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424093 8ir5:C (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424094 8ir5:C (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424095 8ir5:C (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424096 8ir5:D (2.15) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424097 8ir5:D (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424098 8ir5:D (2.15) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424099 8ir5:D (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424100 8ir5:D (2.15) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424101 8ir5:D (2.15) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424102 8ir5:D (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424103 8ir5:D (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424104 8ir5:E (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    424105 8ir5:F (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    424106 8ir5:H (2.15) BS01 CLA ? GO:0009523 ... P19052 38297122
    424107 8ir5:H (2.15) BS02 CLA ? GO:0009523 ... P19052 38297122
    424108 8ir5:H (2.15) BS03 CLA ? GO:0009523 ... P19052 38297122
    424109 8ir5:I (2.15) BS01 CLA ? GO:0005737 ... P12240 38297122
    424110 8ir5:K (2.15) BS02 CLA ? GO:0005737 ... P19054 38297122
    424111 8ir5:K (2.15) BS03 CLA ? GO:0005737 ... P19054 38297122
    424112 8ir5:V (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424113 8ir5:X (2.15) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    424114 8ir5:a (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424115 8ir5:a (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424116 8ir5:a (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424117 8ir5:a (2.15) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424118 8ir5:a (2.15) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424119 8ir5:a (2.15) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424120 8ir5:a (2.15) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424121 8ir5:a (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424122 8ir5:b (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424123 8ir5:b (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424124 8ir5:b (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424125 8ir5:b (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424126 8ir5:b (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424127 8ir5:b (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424128 8ir5:b (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424129 8ir5:b (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424130 8ir5:b (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424131 8ir5:b (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424132 8ir5:b (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424133 8ir5:b (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424134 8ir5:b (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424135 8ir5:b (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424136 8ir5:b (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424137 8ir5:c (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424138 8ir5:c (2.15) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424139 8ir5:c (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424140 8ir5:c (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424141 8ir5:c (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424142 8ir5:c (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424143 8ir5:c (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424144 8ir5:c (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424145 8ir5:c (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424146 8ir5:c (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424147 8ir5:c (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424148 8ir5:c (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424149 8ir5:c (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424150 8ir5:c (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424151 8ir5:d (2.15) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424152 8ir5:d (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424153 8ir5:d (2.15) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424154 8ir5:d (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424155 8ir5:d (2.15) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424156 8ir5:d (2.15) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424157 8ir5:d (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424158 8ir5:d (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424159 8ir5:e (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    424160 8ir5:f (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    424161 8ir5:h (2.15) BS01 CLA ? GO:0009523 ... P19052 38297122
    424162 8ir5:h (2.15) BS02 CLA ? GO:0009523 ... P19052 38297122
    424163 8ir5:h (2.15) BS03 CLA ? GO:0009523 ... P19052 38297122
    424164 8ir5:i (2.15) BS01 CLA ? GO:0005737 ... P12240 38297122
    424165 8ir5:k (2.15) BS02 CLA ? GO:0005737 ... P19054 38297122
    424166 8ir5:k (2.15) BS03 CLA ? GO:0005737 ... P19054 38297122
    424167 8ir5:v (2.15) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424168 8ir6:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424169 8ir6:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424170 8ir6:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424171 8ir6:A (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424172 8ir6:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424173 8ir6:A (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424174 8ir6:A (2.2) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424175 8ir6:A (2.2) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424176 8ir6:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424177 8ir6:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424178 8ir6:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424179 8ir6:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424180 8ir6:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424181 8ir6:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424182 8ir6:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424183 8ir6:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424184 8ir6:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424185 8ir6:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424186 8ir6:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424187 8ir6:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424188 8ir6:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424189 8ir6:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424190 8ir6:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424191 8ir6:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424192 8ir6:C (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424193 8ir6:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424194 8ir6:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424195 8ir6:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424196 8ir6:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424197 8ir6:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424198 8ir6:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424199 8ir6:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424200 8ir6:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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