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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27801 1s4m:A (2.1) BS01 LUM 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 15468322
    27802 1s4m:B (2.1) BS01 LUM 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 15468322
    27803 1s4o:A (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    27804 1s4o:B (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    27805 1s4p:A (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    27806 1s4p:A (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    27807 1s4p:B (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    27808 1s4p:B (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    27809 1s50:A (1.65) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=7.20, Ki=0.063uM
    27810 1s51:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    27811 1s51:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    27812 1s52:A (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    27813 1s52:B (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    27814 1s53:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    27815 1s53:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    27816 1s54:A (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    27817 1s54:B (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    27818 1s56:A (2.43) BS01 HEC ? GO:0005344 ... P9WN25 15016811
    27819 1s56:A (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    27820 1s56:A (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    27821 1s56:A (2.43) BS04 XE ? GO:0005344 ... P9WN25 15016811
    27822 1s56:B (2.43) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    27823 1s56:B (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    27824 1s56:B (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    27825 1s59:A (2.6) BS01 DGI 2.7.4.6 GO:0004550 ... O64903 15465053
    27826 1s59:C (2.6) BS01 DGT 2.7.4.6 GO:0004550 ... O64903 15465053
    27827 1s5d:D (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    27828 1s5d:E (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    27829 1s5d:F (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    27830 1s5d:G (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    27831 1s5d:H (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    27832 1s5e:D (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    27833 1s5e:J (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    27834 1s5f:D (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    27835 1s5f:E (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    27836 1s5f:F (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    27837 1s5f:G (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    27838 1s5f:H (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    27839 1s5g:A (3.1) BS01 ADP ? GO:0003774 ... P24733 15184651
    27840 1s5k:A (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    27841 1s5k:B (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    27842 1s5l:A (3.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    27843 1s5l:A (3.5) BS03 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    27844 1s5l:A (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27845 1s5l:A (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27846 1s5l:A (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27847 1s5l:A (3.5) BS07 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    27848 1s5l:A (3.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27849 1s5l:A (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27850 1s5l:A (3.5) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    27851 1s5l:A (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    27852 1s5l:B (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27853 1s5l:B (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27854 1s5l:B (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27855 1s5l:B (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27856 1s5l:B (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27857 1s5l:B (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27858 1s5l:B (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27859 1s5l:B (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27860 1s5l:B (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27861 1s5l:B (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27862 1s5l:B (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27863 1s5l:B (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27864 1s5l:B (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27865 1s5l:B (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27866 1s5l:B (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27867 1s5l:B (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27868 1s5l:C (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    27869 1s5l:C (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    27870 1s5l:C (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    27871 1s5l:C (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    27872 1s5l:C (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    27873 1s5l:C (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    27874 1s5l:C (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    27875 1s5l:C (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    27876 1s5l:C (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    27877 1s5l:C (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    27878 1s5l:C (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    27879 1s5l:C (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    27880 1s5l:C (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    27881 1s5l:C (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    27882 1s5l:D (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27883 1s5l:D (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27884 1s5l:D (3.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27885 1s5l:D (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27886 1s5l:D (3.5) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27887 1s5l:D (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27888 1s5l:D (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27889 1s5l:D (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27890 1s5l:E (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    27891 1s5l:F (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    27892 1s5l:H (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    27893 1s5l:H (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    27894 1s5l:H (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    27895 1s5l:H (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    27896 1s5l:K (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    27897 1s5l:K (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    27898 1s5l:M (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    27899 1s5l:V (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    27900 1s5l:a (3.5) BS02 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    27901 1s5l:a (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27902 1s5l:a (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27903 1s5l:a (3.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    27904 1s5l:a (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27905 1s5l:a (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27906 1s5l:a (3.5) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    27907 1s5l:a (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27908 1s5l:a (3.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    27909 1s5l:a (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    27910 1s5l:b (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27911 1s5l:b (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27912 1s5l:b (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27913 1s5l:b (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27914 1s5l:b (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27915 1s5l:b (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27916 1s5l:b (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27917 1s5l:b (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27918 1s5l:b (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27919 1s5l:b (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27920 1s5l:b (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27921 1s5l:b (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27922 1s5l:b (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27923 1s5l:b (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27924 1s5l:b (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27925 1s5l:b (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27926 1s5l:c (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    27927 1s5l:c (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    27928 1s5l:c (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    27929 1s5l:c (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    27930 1s5l:c (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    27931 1s5l:c (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    27932 1s5l:c (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    27933 1s5l:c (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    27934 1s5l:c (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    27935 1s5l:c (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    27936 1s5l:c (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    27937 1s5l:c (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    27938 1s5l:c (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    27939 1s5l:c (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    27940 1s5l:d (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27941 1s5l:d (3.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27942 1s5l:d (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27943 1s5l:d (3.5) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27944 1s5l:d (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27945 1s5l:d (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27946 1s5l:d (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27947 1s5l:d (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    27948 1s5l:e (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    27949 1s5l:f (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    27950 1s5l:h (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    27951 1s5l:h (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    27952 1s5l:h (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    27953 1s5l:h (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    27954 1s5l:i (3.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 14764885
    27955 1s5l:k (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    27956 1s5l:k (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    27957 1s5l:m (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    27958 1s5l:v (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    27959 1s5m:A (0.98) BS01 GLC 5.3.1.5 GO:0000287 ... P15587 15157080
    27960 1s5n:A (0.95) BS01 XYL 5.3.1.5 GO:0000287 ... P15587 15157080
    27961 1s5o:A (1.8) BS01 152 2.3.1.137
    2.3.1.7
    GO:0003997 ... P43155 15099582
    27962 1s5s:A (1.4) BS02 PG3 3.4.21.4 GO:0004252 ... P00761 15005618
    27963 1s5x:A (2.4) BS01 HEM ? GO:0004601 ... P80043 15096204
    27964 1s5x:B (2.4) BS01 HEM ? GO:0004601 ... P80044 15096204
    27965 1s5y:A (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    27966 1s5y:B (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    27967 1s5y:C (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    27968 1s5y:D (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    27969 1s5z:A (2.0) BS01 SON 2.7.4.6 GO:0004550 ... P22887 16787337 PDBbind: -logKd/Ki=3.21, Kd=0.62mM
    27970 1s60:A (3.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    27971 1s61:A (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    27972 1s61:B (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    27973 1s63:A (1.9) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 15248757
    27974 1s63:A (1.9) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 15248757 BindingDB: Kd=2.0nM
    27975 1s63:B (1.9) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 15248757
    27976 1s63:B (1.9) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15248757
    27977 1s63:B (1.9) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 15248757
    27978 1s63:B (1.9) BS05 778 2.5.1.58 GO:0003824 ... P49356 15248757 MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    BindingDB: IC50=2nM
    27979 1s64:B (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757 PDBbind: -logKd/Ki=8.40, Ki=4nM
    27980 1s64:D (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    27981 1s64:F (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    27982 1s64:H (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    27983 1s64:J (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    27984 1s64:L (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    27985 1s66:L (1.8) BS01 HEM 3.1.4.52 N/A P76129 15005609
    27986 1s66:U (1.8) BS01 HEM 3.1.4.52 N/A P76129 15005609
    27987 1s67:L (1.5) BS01 HEM 3.1.4.52 N/A P76129 15005609
    27988 1s67:U (1.5) BS01 HEM 3.1.4.52 N/A P76129 15005609
    27989 1s68:A (1.9) BS01 AMP 6.5.1.3 GO:0003972 ... P32277 14962393
    27990 1s69:A (1.68) BS01 CYN ? GO:0005344 ... P73925 15289104
    27991 1s69:A (1.68) BS02 HEM ? GO:0005344 ... P73925 15289104
    27992 1s6a:A (1.69) BS01 AZI ? GO:0005344 ... P73925 15289104
    27993 1s6a:A (1.69) BS02 HEM ? GO:0005344 ... P73925 15289104
    27994 1s6f:A (1.8) BS02 SBP 3.4.21.4 GO:0004252 ... P00761 15005618
    27995 1s6f:A (1.8) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    27996 1s6f:A (1.8) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    27997 1s6f:A (1.8) BS05 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    27998 1s6h:A (1.45) BS02 4BZ 3.4.21.4 GO:0004252 ... P00761 15005618
    27999 1s6p:A (2.9) BS02 IET 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    28000 1s6q:A (3.0) BS01 TPB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218