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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11001 1fvi:A (2.0) BS01 AMP 6.5.1.- GO:0000166 ... A7RCB1 11106756
    11002 1fvo:A (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    11003 1fvo:B (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    11004 1fvt:A (2.2) BS01 106 2.7.11.22 GO:0000082 ... P24941 11141566 PDBbind: -logKd/Ki=7.22, IC50=60nM
    BindingDB: IC50=60nM
    11005 1fvu:B (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    11006 1fvu:D (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    11007 1fvv:A (2.8) BS01 107 2.7.11.22 GO:0000082 ... P24941 11141566 PDBbind: -logKd/Ki=8.00, IC50=10nM
    11008 1fvv:C (2.8) BS01 107 2.7.11.22 GO:0000082 ... P24941 11141566
    11009 1fw1:A (1.9) BS01 SO4 2.5.1.18
    5.2.1.2
    GO:0003824 ... O43708 11327815
    11010 1fw1:A (1.9) BS02 GSH 2.5.1.18
    5.2.1.2
    GO:0003824 ... O43708 11327815
    11011 1fw2:A (2.6) BS01 CA 3.1.1.32
    3.1.1.4
    GO:0004620 ... P0A921 11371166
    11012 1fw6:A (2.7) BS01 dna ? GO:0003677 ... Q56215 11172706
    11013 1fw6:A (2.7) BS02 dna ? GO:0003677 ... Q56215 11172706
    11014 1fw6:A (2.7) BS03 ADP ? GO:0003677 ... Q56215 11172706
    11015 1fw6:B (2.7) BS01 dna ? GO:0003677 ... Q56215 11172706
    11016 1fw6:B (2.7) BS02 dna ? GO:0003677 ... Q56215 11172706
    11017 1fw6:B (2.7) BS03 ADP ? GO:0003677 ... Q56215 11172706
    11018 1fwa:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11019 1fwa:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11020 1fwa:C (2.0) BS03 CO3 3.5.1.5 GO:0005515 ... P18314 9201965
    11021 1fwb:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11022 1fwb:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11023 1fwc:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11024 1fwc:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11025 1fwd:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11026 1fwd:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11027 1fwe:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11028 1fwe:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11029 1fwe:C (2.0) BS03 HAE 3.5.1.5 GO:0005515 ... P18314 9201965 PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    11030 1fwf:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11031 1fwf:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11032 1fwg:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11033 1fwg:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11034 1fwh:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11035 1fwh:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11036 1fwi:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8702515
    11037 1fwj:C (2.2) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11038 1fwj:C (2.2) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    11039 1fwk:A (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    11040 1fwk:B (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    11041 1fwk:C (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    11042 1fwk:D (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    11043 1fwm:A (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    11044 1fwm:B (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    11045 1fwn:A (1.94) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    11046 1fwn:B (1.94) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    11047 1fwq:A (-1.00) BS01 ZN ? GO:0005085 ... P47224 7651540
    11048 1fws:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    11049 1fws:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    11050 1fwt:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    11051 1fwt:A (1.9) BS02 E4P 2.5.1.55 GO:0005737 ... O66496 11115499
    11052 1fwt:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    11053 1fww:A (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    11054 1fww:A (1.85) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 19228070
    11055 1fww:B (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    11056 1fwx:A (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11057 1fwx:A (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11058 1fwx:A (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11059 1fwx:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11060 1fwx:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11061 1fwx:B (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11062 1fwx:C (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11063 1fwx:C (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11064 1fwx:C (1.6) BS03 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11065 1fwx:C (1.6) BS04 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11066 1fwx:D (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11067 1fwx:D (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11068 1fwx:D (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    11069 1fwy:A (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    11070 1fwy:B (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    11071 1fwz:A (2.3) BS01 SO4 ? GO:0003677 ... P0DJL7 11320302
    11072 1fwz:A (2.3) BS02 ZN ? GO:0003677 ... P0DJL7 11320302
    11073 1fx4:A (1.9) BS01 MG 4.6.1.1 GO:0009190 ... Q99280 11157750
    11074 1fx6:A (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    11075 1fx6:B (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    11076 1fx7:A (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    11077 1fx7:A (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    11078 1fx7:A (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    11079 1fx7:B (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    11080 1fx7:B (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    11081 1fx7:B (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    11082 1fx7:C (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    11083 1fx7:C (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    11084 1fx7:C (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    11085 1fx7:D (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    11086 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    11087 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    11088 1fx8:A (2.2) BS01 GOL ? GO:0005372 ... P0AER0 11039922
    11089 1fx8:A (2.2) BS02 GOL ? GO:0005372 ... P0AER0 11039922
    11090 1fx9:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    11091 1fx9:A (2.0) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11092 1fx9:A (2.0) BS03 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    11093 1fx9:B (2.0) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    11094 1fx9:B (2.0) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    11095 1fx9:B (2.0) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11096 1fx9:B (2.0) BS04 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11097 1fxa:A (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    11098 1fxa:B (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    11099 1fxf:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    11100 1fxf:A (1.85) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11101 1fxf:A (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11102 1fxf:A (1.85) BS04 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    11103 1fxf:A (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11104 1fxf:B (1.85) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    11105 1fxf:B (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    11106 1fxf:B (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11107 1fxf:B (1.85) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11108 1fxf:B (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    11109 1fxh:A (1.97) BS01 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    11110 1fxh:B (1.97) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    11111 1fxh:B (1.97) BS02 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    11112 1fxi:A (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    11113 1fxi:B (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    11114 1fxi:C (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    11115 1fxi:D (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    11116 1fxo:A (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11117 1fxo:A (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11118 1fxo:A (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11119 1fxo:B (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11120 1fxo:B (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11121 1fxo:B (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11122 1fxo:C (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11123 1fxo:C (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11124 1fxo:C (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11125 1fxo:D (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11126 1fxo:D (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11127 1fxo:D (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11128 1fxo:E (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11129 1fxo:E (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11130 1fxo:E (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11131 1fxo:F (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11132 1fxo:F (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11133 1fxo:F (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11134 1fxo:G (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11135 1fxo:G (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11136 1fxo:G (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11137 1fxo:H (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11138 1fxo:H (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11139 1fxo:H (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    11140 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    11141 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    11142 1fxq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    11143 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    11144 1fxq:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    11145 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    11146 1fxs:A (2.3) BS01 NAP 1.1.1.271 GO:0005737 ... P32055 9862812
    11147 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    11148 1fxu:A (2.2) BS02 GU7 2.4.2.1 GO:0003824 ... P55859 11134924
    11149 1fxv:A (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    11150 1fxv:B (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    11151 1fxv:B (2.25) BS02 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    11152 1fxw:A (2.1) BS01 CA 3.1.1.47 GO:0003847 ... Q29460 11522926
    11153 1fxy:A (2.15) BS01 0G6 3.4.21.4 GO:0004252 ... P07477 9707558
    11154 1fy4:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    11155 1fy5:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    11156 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    11157 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    11158 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    11159 1fy7:A (2.0) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 11106757
    11160 1fy8:E (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    11161 1fyd:A (2.25) BS01 AMP 6.3.1.5 GO:0003952 ... P08164 11375500
    11162 1fyd:A (2.25) BS02 POP 6.3.1.5 GO:0003952 ... P08164 11375500
    11163 1fyf:A (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    11164 1fyf:A (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    11165 1fyf:B (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    11166 1fyf:B (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    11167 1fyk:A (2.5) BS01 dna ? GO:0003700 ... P22121 11599025
    11168 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    11169 1fyt:A (2.6) BS01 peptide ? GO:0006955 ... P01903 11060013
    11170 1fyt:B (2.6) BS01 peptide ? GO:0006955 ... P01911 11060013
    11171 1fyz:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11172 1fyz:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11173 1fyz:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11174 1fyz:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11175 1fz0:A (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11176 1fz0:A (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11177 1fz0:B (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11178 1fz0:B (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11179 1fz0:C (2.07) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    11180 1fz1:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11181 1fz1:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11182 1fz1:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11183 1fz1:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11184 1fz1:C (1.96) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    11185 1fz2:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11186 1fz2:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11187 1fz2:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11188 1fz2:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11189 1fz2:C (2.15) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    11190 1fz3:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11191 1fz3:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11192 1fz3:B (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11193 1fz3:B (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11194 1fz4:A (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11195 1fz4:A (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11196 1fz4:B (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11197 1fz4:B (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    11198 1fz5:A (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11199 1fz5:B (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    11200 1fz6:A (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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