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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    713601 9fe7:B (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713602 9fe7:B (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713603 9fe7:D (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713604 9fe7:D (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713605 9fe8:B (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713606 9fe8:B (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713607 9fe8:D (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713608 9fe8:D (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713609 9fea:B (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713610 9fea:B (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713611 9fea:B (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    713612 9fea:D (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713613 9fea:D (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713614 9fea:D (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    713615 9fgq:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    713616 9fgq:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    713617 9fgq:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    713618 9fgq:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    713619 9fgq:C (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    713620 9fgq:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    713621 9fgq:C (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    713622 9fgq:D (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    713623 9fgq:D (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    713624 9fgq:D (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    713625 9fgq:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    713626 9fgq:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    713627 9fgq:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    713628 9fgq:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    713629 9fgq:G (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    713630 9fgq:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    713631 9fgq:G (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    713632 9fgq:H (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    713633 9fgq:H (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    713634 9fgq:H (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    713635 9fh9:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    713636 9fh9:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    713637 9fh9:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    713638 9fh9:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    713639 9fh9:C (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    713640 9fh9:C (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    713641 9fh9:C (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    713642 9fh9:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    713643 9fh9:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    713644 9fh9:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    713645 9fh9:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    713646 9fh9:G (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    713647 9fh9:G (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    713648 9fh9:G (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    713649 9fif:B (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713650 9fif:B (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713651 9fif:B (1.77) BS03 NAI N/A GO:0046872 ... O66841 38960077
    713652 9fif:D (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713653 9fif:D (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713654 9fih:B (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713655 9fih:B (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713656 9fih:B (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    713657 9fih:D (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713658 9fih:D (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713659 9fih:D (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    713660 9fii:B (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713661 9fii:B (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713662 9fii:D (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713663 9fii:D (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    713664 9fij:B (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713665 9fij:B (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713666 9fij:D (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713667 9fij:D (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713668 9fil:B (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713669 9fil:B (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713670 9fil:B (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    713671 9fil:D (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    713672 9fil:D (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    713673 9fil:D (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    713674 9fmd:1 (3.3) BS01 rna N/A GO:0003014 ... Q9H875 38925148
    713675 9fmd:1 (3.3) BS02 rna N/A GO:0003014 ... Q9H875 38925148
    713676 9fmd:32 (3.3) BS01 rna N/A GO:0003723 ... Q9Y421 38925148
    713677 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    713678 9fmd:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    713679 9fmd:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    713680 9fmd:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    713681 9fmd:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    713682 9fmd:A (3.3) BS05 rna N/A GO:0000244 ... Q6P2Q9 38925148
    713683 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    713684 9fmd:C (3.3) BS01 rna N/A GO:0000398 ... Q15029 38925148
    713685 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    713686 9fmd:E (3.3) BS01 rna N/A GO:0000375 ... Q96DI7 38925148
    713687 9fmd:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 38925148
    713688 9fmd:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 38925148
    713689 9fmd:L (3.3) BS03 rna N/A GO:0000077 ... Q99459 38925148
    713690 9fmd:M (3.3) BS01 rna N/A GO:0000398 ... O95926 38925148
    713691 9fmd:M (3.3) BS02 rna N/A GO:0000398 ... O95926 38925148
    713692 9fmd:N (3.3) BS01 rna N/A GO:0000398 ... P41223 38925148
    713693 9fmd:N (3.3) BS02 rna N/A GO:0000398 ... P41223 38925148
    713694 9fmd:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 38925148
    713695 9fmd:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 38925148
    713696 9fmd:N (3.3) BS05 ZN N/A GO:0000398 ... P41223 38925148
    713697 9fmd:O (3.3) BS01 rna N/A GO:0000398 ... Q9NW64 38925148
    713698 9fmd:O (3.3) BS02 rna N/A GO:0000398 ... Q9NW64 38925148
    713699 9fmd:O (3.3) BS03 ZN N/A GO:0000398 ... Q9NW64 38925148
    713700 9fmd:O (3.3) BS04 ZN N/A GO:0000398 ... Q9NW64 38925148
    713701 9fmd:O (3.3) BS05 ZN N/A GO:0000398 ... Q9NW64 38925148
    713702 9fmd:P (3.3) BS01 rna N/A GO:0000398 ... Q9P013 38925148
    713703 9fmd:P (3.3) BS02 rna N/A GO:0000398 ... Q9P013 38925148
    713704 9fmd:P (3.3) BS03 rna N/A GO:0000398 ... Q9P013 38925148
    713705 9fmd:R (3.3) BS01 rna N/A GO:0000122 ... Q13573 38925148
    713706 9fmd:R (3.3) BS02 rna N/A GO:0000122 ... Q13573 38925148
    713707 9fmd:SR (3.3) BS01 rna N/A GO:0000398 ... Q9UQ35 38925148
    713708 9fmd:SR (3.3) BS02 rna N/A GO:0000398 ... Q9UQ35 38925148
    713709 9fmd:T (3.3) BS01 rna N/A GO:0000398 ... O43660 38925148
    713710 9fmd:U (3.3) BS01 IHP N/A GO:0000375 ... O95391 38925148
    713711 9fmd:W (3.3) BS01 rna N/A GO:0000398 ... O60508 38925148
    713712 9fmd:W (3.3) BS02 rna N/A GO:0000398 ... O60508 38925148
    713713 9fmd:a (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    713714 9fmd:b (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    713715 9fmd:c (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    713716 9fmd:d (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    713717 9fmd:e (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    713718 9fmd:f (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    713719 9fmd:g (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    713720 9fmd:h (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    713721 9fmd:i (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    713722 9fmd:j (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    713723 9fmd:k (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    713724 9fmd:l (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    713725 9fmd:m (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    713726 9fmd:n (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    713727 9fmd:o (3.3) BS01 rna N/A GO:0000398 ... P09661 38925148
    713728 9fmd:p (3.3) BS01 rna N/A GO:0000398 ... P08579 38925148
    713729 9fmm:A (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    713730 9fmm:A (2.5) BS02 ZN N/A GO:0001618 ... Q9BYF1 39066808
    713731 9fmm:B (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    713732 9fmm:B (2.5) BS02 ZN N/A GO:0001618 ... Q9BYF1 39066808
    713733 9fp6:A (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    713734 9fp6:B (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    713735 9fp6:C (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    713736 9fp6:D (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    713737 9fp6:E (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    713738 9fp6:F (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    713739 9fpz:A (2.69) BS01 rna N/A GO:0003723 ... P50579 N/A
    713740 9fpz:A (2.69) BS02 CO N/A GO:0003723 ... P50579 N/A
    713741 9fpz:A (2.69) BS03 CO N/A GO:0003723 ... P50579 N/A
    713742 9fpz:B (2.69) BS01 rna N/A GO:0001525 ... Q9BXJ9 N/A
    713743 9fpz:B (2.69) BS02 IHP N/A GO:0001525 ... Q9BXJ9 N/A
    713744 9fpz:LC (2.69) BS01 rna N/A GO:0002181 ... P36578 N/A
    713745 9fpz:LE (2.69) BS01 rna N/A GO:0000027 ... Q02878 N/A
    713746 9fpz:LR (2.69) BS01 rna N/A GO:0002181 ... P84098 N/A
    713747 9fpz:LX (2.69) BS01 rna N/A GO:0000027 ... P62750 N/A
    713748 9fpz:LX (2.69) BS02 rna N/A GO:0000027 ... P62750 N/A
    713749 9fpz:LY (2.69) BS01 rna N/A GO:0002181 ... P61254 N/A
    713750 9fpz:LY (2.69) BS02 rna N/A GO:0002181 ... P61254 N/A
    713751 9fpz:Lh (2.69) BS01 rna N/A GO:0000463 ... P42766 N/A
    713752 9fpz:Lk (2.69) BS01 rna N/A GO:0001501 ... P63173 N/A
    713753 9fpz:Lr (2.69) BS01 rna N/A GO:0002181 ... P46779 N/A
    713754 9fq0:D (4.67) BS01 rna N/A GO:0001701 ... P20290 N/A
    713755 9fq0:LC (4.67) BS01 rna N/A GO:0002181 ... P36578 N/A
    713756 9fq0:LE (4.67) BS01 rna N/A GO:0000027 ... Q02878 N/A
    713757 9fq0:LR (4.67) BS01 rna N/A GO:0002181 ... P84098 N/A
    713758 9fq0:LU (4.67) BS01 rna N/A GO:0002181 ... P35268 N/A
    713759 9fq0:LX (4.67) BS01 rna N/A GO:0000027 ... P62750 N/A
    713760 9fq0:LX (4.67) BS02 rna N/A GO:0000027 ... P62750 N/A
    713761 9fq0:Lh (4.67) BS01 rna N/A GO:0000463 ... P42766 N/A
    713762 9fq0:Lk (4.67) BS01 rna N/A GO:0001501 ... P63173 N/A
    713763 9fq0:Lr (4.67) BS01 rna N/A GO:0002181 ... P46779 N/A
    713764 9fst:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    713765 9fst:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    713766 9fst:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    713767 9fst:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    713768 9fsv:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    713769 9fsv:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    713770 9fsv:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    713771 9fsv:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    713772 9fsv:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    713773 9ft0:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    713774 9ft0:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    713775 9ft0:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    713776 9ft1:G (2.6) BS01 MG N/A GO:0000502 ... P21243 N/A
    713777 9ft1:I (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    713778 9ft1:L (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    713779 9ft1:W (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    713780 9ft1:Z (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    713781 9fwg:A (3.2) BS01 A1IG2 N/A GO:0000122 ... O60341 38619005
    713782 9fyb:A (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    713783 9fyb:B (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    713784 9g0k:A (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    713785 9g0k:B (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    713786 9gac:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    713787 9gac:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    713788 9gaf:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    713789 9gaf:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    713790 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    713791 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    713792 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    713793 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    713794 9gss:A (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    713795 9gss:B (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    713796 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    713797 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    713798 9ica:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713799 9ica:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713800 9ica:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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