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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    712201 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    712202 8z3s:B (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    712203 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    712204 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    712205 8z3s:C (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    712206 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    712207 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    712208 8z3s:D (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    712209 8z3s:D (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    712210 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    712211 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    712212 8z5l:A (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712213 8z5l:A (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712214 8z5l:A (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712215 8z5l:B (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712216 8z5l:B (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712217 8z5l:B (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712218 8z5l:B (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    712219 8z5l:C (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712220 8z5l:C (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712221 8z5l:C (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712222 8z5l:C (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    712223 8z5l:D (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712224 8z5l:D (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712225 8z5l:D (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    712226 8z85:B (2.3) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712227 8z85:B (2.3) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712228 8z8j:B (3.16) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712229 8z8j:B (3.16) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712230 8z8n:B (2.79) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712231 8z8n:B (2.79) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712232 8z8x:B (3.06) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712233 8z8x:B (3.06) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712234 8z8x:B (3.06) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    712235 8z8x:C (3.06) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    712236 8z90:B (2.87) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712237 8z90:B (2.87) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712238 8z90:B (2.87) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    712239 8z90:C (2.87) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    712240 8z97:B (2.65) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712241 8z97:B (2.65) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712242 8z97:B (2.65) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712243 8z97:B (2.65) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712244 8z97:B (2.65) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    712245 8z97:C (2.65) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    712246 8z97:C (2.65) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    712247 8z97:C (2.65) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    712248 8z98:B (2.52) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712249 8z9a:D (3.0) BS01 SOU N/A GO:0004984 ... A0A1S6J146 38870272
    712250 8z9h:B (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712251 8z9h:B (2.7) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712252 8z9h:B (2.7) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712253 8z9h:B (2.7) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712254 8z9h:B (2.7) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    712255 8z9h:C (2.7) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    712256 8z9h:C (2.7) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    712257 8z9h:C (2.7) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    712258 8z9h:I (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712259 8z9q:B (2.33) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712260 8z9r:B (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712261 8z9r:B (2.58) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712262 8z9r:B (2.58) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712263 8z9r:B (2.58) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712264 8z9r:C (2.58) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    712265 8z9r:C (2.58) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    712266 8z9r:I (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    712267 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    712268 8zb8:A (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    712269 8zb8:A (2.94) BS03 A1D8I N/A GO:0000226 ... Q2XVP4 N/A
    712270 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    712271 8zb8:B (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    712272 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    712273 8zb8:C (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    712274 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    712275 8zb8:D (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    712276 8zbe:A (3.24) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    712277 8zcj:G (3.09) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    712278 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    712279 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    712280 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    712281 8zee:A (2.9) BS04 FE2 N/A GO:0005506 ... P07753 38890314
    712282 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    712283 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    712284 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    712285 8zee:B (2.9) BS01 CLA N/A GO:0009507 ... P37255 38890314
    712286 8zee:B (2.9) BS02 CLA N/A GO:0009507 ... P37255 38890314
    712287 8zee:B (2.9) BS03 CLA N/A GO:0009507 ... P37255 38890314
    712288 8zee:B (2.9) BS04 CLA N/A GO:0009507 ... P37255 38890314
    712289 8zee:B (2.9) BS05 CLA N/A GO:0009507 ... P37255 38890314
    712290 8zee:B (2.9) BS06 CLA N/A GO:0009507 ... P37255 38890314
    712291 8zee:B (2.9) BS07 CLA N/A GO:0009507 ... P37255 38890314
    712292 8zee:B (2.9) BS08 CLA N/A GO:0009507 ... P37255 38890314
    712293 8zee:B (2.9) BS09 CLA N/A GO:0009507 ... P37255 38890314
    712294 8zee:B (2.9) BS10 CLA N/A GO:0009507 ... P37255 38890314
    712295 8zee:B (2.9) BS11 CLA N/A GO:0009507 ... P37255 38890314
    712296 8zee:B (2.9) BS12 CLA N/A GO:0009507 ... P37255 38890314
    712297 8zee:B (2.9) BS13 CLA N/A GO:0009507 ... P37255 38890314
    712298 8zee:B (2.9) BS14 CLA N/A GO:0009507 ... P37255 38890314
    712299 8zee:B (2.9) BS15 CLA N/A GO:0009507 ... P37255 38890314
    712300 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    712301 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    712302 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    712303 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    712304 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    712305 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    712306 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    712307 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    712308 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    712309 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    712310 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    712311 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    712312 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    712313 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    712314 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    712315 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    712316 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    712317 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    712318 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    712319 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    712320 8zee:D (2.9) BS08 FE2 N/A GO:0005506 ... P06007 38890314
    712321 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    712322 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    712323 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    712324 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    712325 8zee:H (2.9) BS01 CLA N/A GO:0009507 ... P22666 38890314
    712326 8zee:H (2.9) BS02 CLA N/A GO:0009507 ... P22666 38890314
    712327 8zee:H (2.9) BS03 CLA N/A GO:0009507 ... P22666 38890314
    712328 8zee:I (2.9) BS01 CLA N/A GO:0005737 ... P59763 38890314
    712329 8zee:X (2.9) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    712330 8zgs:B (3.04) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    712331 8zgt:B (2.96) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    712332 8zj2:D (4.66) BS01 MG N/A GO:0003924 ... P84095 38857861
    712333 8zj2:D (4.66) BS02 GTP N/A GO:0003924 ... P84095 38857861
    712334 8zje:R (3.07) BS01 peptide N/A GO:0004930 ... Q969F8 N/A
    712335 8zjv:A (1.8) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    712336 8zkc:A (2.85) BS01 MG ? GO:0005524 ... P0AF08 38797154
    712337 8zly:A (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712338 8zly:A (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712339 8zly:A (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712340 8zly:A (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712341 8zly:B (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712342 8zly:B (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712343 8zly:B (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712344 8zly:B (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712345 8zly:C (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712346 8zly:C (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712347 8zly:C (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712348 8zly:C (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712349 8zly:D (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712350 8zly:D (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712351 8zly:D (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712352 8zly:D (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712353 8zly:E (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712354 8zly:E (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712355 8zly:E (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712356 8zly:E (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712357 8zly:F (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712358 8zly:F (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712359 8zly:F (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712360 8zly:F (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712361 8zly:G (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712362 8zly:G (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712363 8zly:G (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    712364 8zly:G (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712365 8zly:H (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    712366 8zly:H (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    712367 8zly:H (1.89) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    712368 8zm1:A (2.35) BS01 A1L16 N/A GO:0004672 ... Q15119 38844173
    712369 8zm2:A (2.34) BS01 A1L17 N/A GO:0004672 ... Q15119 38844173
    712370 8zmr:A (3.5) BS01 A1LWL N/A GO:0005277 ... P0AEX9
    Q16572    		 38862671
    712371 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712372 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712373 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712374 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712375 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712376 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712377 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712378 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712379 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712380 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712381 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712382 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712383 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712384 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712385 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712386 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    712387 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712388 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712389 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712390 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712391 8znb:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    712392 8znc:A (2.41) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    712393 8znc:A (2.41) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    712394 8znd:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    712395 8zne:A (2.64) BS01 NAP N/A GO:0004352 ... O74024 N/A
    712396 8zne:A (2.64) BS02 GLU N/A GO:0004352 ... O74024 N/A
    712397 8zng:A (2.5) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    712398 8zng:A (2.5) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    712399 8zoz:A (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    712400 8zoz:B (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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