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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    711601 8y6b:A (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    711602 8y6b:B (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    711603 8y6b:B (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    711604 8y6b:B (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    711605 8y6b:C (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    711606 8y6b:C (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    711607 8y6b:C (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    711608 8y6b:D (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    711609 8y6b:E (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    711610 8y6b:F (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    711611 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711612 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711613 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711614 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711615 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711616 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711617 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711618 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711619 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711620 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711621 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711622 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711623 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    711624 8y6o:C (3.38) BS01 rna ? GO:0000244 ... Q6P2Q9 38484052
    711625 8y6o:C (3.38) BS02 rna ? GO:0000244 ... Q6P2Q9 38484052
    711626 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    711627 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    711628 8y6o:F (3.38) BS01 rna ? GO:0000375 ... Q96DI7 38484052
    711629 8y6o:G (3.38) BS01 rna ? GO:0000244 ... O94906 38484052
    711630 8y6o:G (3.38) BS02 rna ? GO:0000244 ... O94906 38484052
    711631 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    711632 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    711633 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    711634 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052
    711635 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    711636 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    711637 8y6o:O (3.38) BS01 rna ? GO:0000398 ... P55769 38484052
    711638 8y6o:R (3.38) BS01 rna ? GO:0000398 ... Q86UT8 38484052
    711639 8y6o:R (3.38) BS02 rna ? GO:0000398 ... Q86UT8 38484052
    711640 8y6o:R (3.38) BS03 ZN ? GO:0000398 ... Q86UT8 38484052
    711641 8y6o:R (3.38) BS04 ZN ? GO:0000398 ... Q86UT8 38484052
    711642 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38484052
    711643 8y6o:V (3.38) BS01 ZN ? GO:0005515 ... Q9UDW3 38484052
    711644 8y6o:V (3.38) BS02 ZN ? GO:0005515 ... Q9UDW3 38484052
    711645 8y6o:W (3.38) BS01 rna ? GO:0000398 ... Q16560 38484052
    711646 8y6o:W (3.38) BS02 rna ? GO:0000398 ... Q16560 38484052
    711647 8y6o:X (3.38) BS01 rna ? GO:0000398 ... Q9BV90 38484052
    711648 8y6o:X (3.38) BS02 rna ? GO:0000398 ... Q9BV90 38484052
    711649 8y6o:Y (3.38) BS01 rna ? GO:0005515 ... Q6IEG0 38484052
    711650 8y6o:Y (3.38) BS02 rna ? GO:0005515 ... Q6IEG0 38484052
    711651 8y6o:Y (3.38) BS03 ZN ? GO:0005515 ... Q6IEG0 38484052
    711652 8y6o:Z (3.38) BS01 rna ? GO:0005634 ... Q8N8D1 38484052
    711653 8y6o:a (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    711654 8y6o:b (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    711655 8y6o:c (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    711656 8y6o:d (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    711657 8y6o:e (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    711658 8y6o:f (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    711659 8y6o:g (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    711660 8y6o:h (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    711661 8y6o:i (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    711662 8y6o:j (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    711663 8y6o:k (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    711664 8y6o:l (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    711665 8y6o:m (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    711666 8y6o:n (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    711667 8y6o:o (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    711668 8y6o:p (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    711669 8y6o:q (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    711670 8y6o:r (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    711671 8y6o:s (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    711672 8y6o:t (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    711673 8y6o:u (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    711674 8y6u:C (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    711675 8y6u:C (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    711676 8y6u:D (3.97) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    711677 8y6u:D (3.97) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    711678 8y6u:F (3.97) BS01 dna ? GO:0003677 ... Q0P6L9 38039839
    711679 8y6u:F (3.97) BS02 dna ? GO:0003677 ... Q0P6L9 38039839
    711680 8y6u:H (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    711681 8y6u:H (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    711682 8y6u:I (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    711683 8y6u:I (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    711684 8y6u:J (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    711685 8y6u:J (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    711686 8y7e:1 (4.66) BS01 rna ? GO:0000245 ... O75533 38484052
    711687 8y7e:1 (4.66) BS02 rna ? GO:0000245 ... O75533 38484052
    711688 8y7e:2 (4.66) BS01 rna ? GO:0000398 ... Q13435 38484052
    711689 8y7e:6 (4.66) BS01 rna ? GO:0000398 ... Q7RTV0 38484052
    711690 8y7e:6 (4.66) BS02 rna ? GO:0000398 ... Q7RTV0 38484052
    711691 8y7e:6 (4.66) BS03 ZN ? GO:0000398 ... Q7RTV0 38484052
    711692 8y7e:6 (4.66) BS04 ZN ? GO:0000398 ... Q7RTV0 38484052
    711693 8y7e:6 (4.66) BS05 ZN ? GO:0000398 ... Q7RTV0 38484052
    711694 8y7e:h (4.66) BS01 rna ? GO:0000243 ... P62318 38484052
    711695 8y7e:i (4.66) BS01 rna ? GO:0000387 ... P14678 38484052
    711696 8y7e:j (4.66) BS01 rna ? GO:0000243 ... P62314 38484052
    711697 8y7e:k (4.66) BS01 rna ? GO:0000245 ... P62316 38484052
    711698 8y7e:l (4.66) BS01 rna ? GO:0000245 ... P62304 38484052
    711699 8y7e:m (4.66) BS01 rna ? GO:0000387 ... P62306 38484052
    711700 8y7e:n (4.66) BS01 rna ? GO:0000245 ... P62308 38484052
    711701 8y7e:v (4.66) BS01 rna ? GO:0000380 ... Q9BWG6 38484052
    711702 8y7e:v (4.66) BS02 ZN ? GO:0000380 ... Q9BWG6 38484052
    711703 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    711704 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    711705 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    711706 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    711707 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    711708 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    711709 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    711710 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    711711 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    711712 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    711713 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    711714 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358
    711715 8y91:A (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    711716 8y91:D (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    711717 8y92:A (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    711718 8y92:B (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    711719 8y93:A (3.0) BS01 TP0 ? GO:0003779 ... P23975 38750358
    711720 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    711721 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    711722 8y9x:A (2.0) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    711723 8y9x:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    711724 8yb6:A (3.06) BS01 rna N/A GO:0051607 ... A0A1V6F8C5 39047725
    711725 8yb6:A (3.06) BS02 ZN N/A GO:0051607 ... A0A1V6F8C5 39047725
    711726 8ybe:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 N/A
    711727 8ybe:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 N/A
    711728 8ybj:A (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    711729 8ybj:A (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    711730 8ybj:B (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    711731 8ybj:B (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    711732 8ybj:C (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    711733 8ybj:C (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    711734 8ybj:D (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    711735 8ybj:D (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    711736 8ybj:E (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    711737 8ybj:E (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    711738 8ybj:F (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    711739 8ybj:F (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    711740 8ybj:G (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    711741 8ybj:G (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    711742 8ybj:H (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    711743 8ybj:H (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    711744 8ybk:A (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    711745 8ybk:A (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    711746 8ybk:B (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    711747 8ybk:B (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    711748 8ybk:C (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    711749 8ybk:C (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    711750 8ybk:D (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    711751 8ybk:E (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    711752 8ybk:E (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    711753 8ybk:F (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    711754 8ybk:F (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    711755 8ybk:G (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    711756 8ybk:G (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    711757 8ybk:H (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    711758 8ybk:H (2.69) BS02 dna N/A GO:0000786 ... P06899 38972377
    711759 8yc0:e (4.12) BS01 peptide ? GO:0004888 ... P07766 38657677
    711760 8yc0:m (4.12) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    711761 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    711762 8yc0:n (4.12) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603    		 38657677
    711763 8yf1:A (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    711764 8yf1:B (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    711765 8ygj:A (3.2) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    711766 8ygj:A (3.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    711767 8ygj:A (3.2) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    711768 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    711769 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    711770 8yha:A (3.4) BS01 rna N/A GO:0051607 ... A0A1V6F8C5 39047725
    711771 8yha:A (3.4) BS02 dna N/A GO:0051607 ... A0A1V6F8C5 39047725
    711772 8yha:A (3.4) BS03 ZN N/A GO:0051607 ... A0A1V6F8C5 39047725
    711773 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    711774 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    711775 8yhh:B (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    711776 8yhl:A (1.47) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    711777 8yhr:A (1.7) BS01 ORO 1.3.5.2 GO:0004151 ... Q02127 38724483
    711778 8yhr:A (1.7) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 38724483
    711779 8yhr:A (1.7) BS03 A1LYU 1.3.5.2 GO:0004151 ... Q02127 38724483
    711780 8yhw:A (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    711781 8yhw:A (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    711782 8yhw:B (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    711783 8yhw:B (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    711784 8yhw:C (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    711785 8yhw:C (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    711786 8yhw:D (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    711787 8yhw:D (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    711788 8yie:A (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    711789 8yie:B (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    711790 8yif:A (1.6) BS01 A1L2I N/A GO:0004556 ... D2YYD7 N/A
    711791 8yj6:C (1.37) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711792 8yj7:A (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711793 8yj7:B (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711794 8yj7:C (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711795 8yj7:D (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711796 8yj8:A (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711797 8yj8:B (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    711798 8yjx:A (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    711799 8yjx:B (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    711800 8yk5:A (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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