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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    709801 8xlp:A (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    709802 8xlp:A (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    709803 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    709804 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    709805 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    709806 8xlp:B (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    709807 8xlp:B (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    709808 8xlp:B (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    709809 8xlp:B (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    709810 8xlp:B (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    709811 8xlp:B (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    709812 8xlp:B (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    709813 8xlp:B (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    709814 8xlp:B (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    709815 8xlp:B (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    709816 8xlp:B (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    709817 8xlp:B (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    709818 8xlp:B (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    709819 8xlp:B (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    709820 8xlp:B (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    709821 8xlp:B (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    709822 8xlp:B (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    709823 8xlp:B (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    709824 8xlp:B (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    709825 8xlp:D (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    709826 8xlp:D (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    709827 8xlp:D (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    709828 8xlp:D (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    709829 8xlp:D (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    709830 8xlp:D (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    709831 8xlp:D (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    709832 8xlp:D (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    709833 8xlp:D (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    709834 8xlp:D (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    709835 8xlp:E (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    709836 8xlp:F (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    709837 8xlp:F (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    709838 8xlp:H (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    709839 8xlp:H (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    709840 8xlp:H (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    709841 8xlp:H (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    709842 8xlp:H (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    709843 8xlp:I (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    709844 8xlp:I (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    709845 8xlp:K (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    709846 8xlp:K (2.57) BS02 CLA N/A GO:0005737 ... A6MVZ3 N/A
    709847 8xlp:K (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    709848 8xlp:K (2.57) BS04 WVN N/A GO:0005737 ... A6MVZ3 N/A
    709849 8xlp:L (2.57) BS01 CLA N/A GO:0005737 ... A6MVV3 N/A
    709850 8xlp:X (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    709851 8xlp:Y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    709852 8xlp:a (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    709853 8xlp:a (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    709854 8xlp:a (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    709855 8xlp:a (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    709856 8xlp:a (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    709857 8xlp:a (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    709858 8xlp:a (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    709859 8xlp:a (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    709860 8xlp:a (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    709861 8xlp:a (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    709862 8xlp:a (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    709863 8xlp:a (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    709864 8xlp:a (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    709865 8xlp:b (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    709866 8xlp:b (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    709867 8xlp:b (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    709868 8xlp:b (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    709869 8xlp:b (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    709870 8xlp:b (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    709871 8xlp:b (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    709872 8xlp:b (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    709873 8xlp:b (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    709874 8xlp:b (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    709875 8xlp:b (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    709876 8xlp:b (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    709877 8xlp:b (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    709878 8xlp:b (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    709879 8xlp:b (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    709880 8xlp:b (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    709881 8xlp:b (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    709882 8xlp:b (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    709883 8xlp:b (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    709884 8xlp:d (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    709885 8xlp:d (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    709886 8xlp:d (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    709887 8xlp:d (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    709888 8xlp:d (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    709889 8xlp:d (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    709890 8xlp:d (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    709891 8xlp:d (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    709892 8xlp:d (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    709893 8xlp:d (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    709894 8xlp:e (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    709895 8xlp:f (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    709896 8xlp:f (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    709897 8xlp:h (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    709898 8xlp:h (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    709899 8xlp:h (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    709900 8xlp:h (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    709901 8xlp:h (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    709902 8xlp:i (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    709903 8xlp:i (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    709904 8xlp:k (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    709905 8xlp:k (2.57) BS02 WVN N/A GO:0005737 ... A6MVZ3 N/A
    709906 8xlp:k (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    709907 8xlp:x (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    709908 8xlp:y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    709909 8xlq:A (1.95) BS01 A1LVQ 2.7.10.1 GO:0004672 ... P22455 38432058
    709910 8xm7:D (4.91) BS01 MG N/A GO:0003924 ... P84095 38857861
    709911 8xm7:D (4.91) BS02 GTP N/A GO:0003924 ... P84095 38857861
    709912 8xmb:A (3.4) BS01 rna N/A GO:0000418 ... Q9LQ02 N/A
    709913 8xmb:A (3.4) BS02 MG N/A GO:0000418 ... Q9LQ02 N/A
    709914 8xmb:A (3.4) BS03 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709915 8xmb:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709916 8xmb:B (3.4) BS01 dna N/A GO:0000418 ... Q9LK40 N/A
    709917 8xmb:B (3.4) BS02 rna N/A GO:0000418 ... Q9LK40 N/A
    709918 8xmb:B (3.4) BS03 dna N/A GO:0000418 ... Q9LK40 N/A
    709919 8xmb:B (3.4) BS04 ZN N/A GO:0000418 ... Q9LK40 N/A
    709920 8xmb:B (3.4) BS05 GTP N/A GO:0000418 ... Q9LK40 N/A
    709921 8xmb:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    709922 8xmc:A (3.1) BS01 dna N/A GO:0000418 ... Q9LQ02 N/A
    709923 8xmc:A (3.1) BS02 rna N/A GO:0000418 ... Q9LQ02 N/A
    709924 8xmc:A (3.1) BS03 dna N/A GO:0000418 ... Q9LQ02 N/A
    709925 8xmc:A (3.1) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709926 8xmc:A (3.1) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    709927 8xmc:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709928 8xmc:A (3.1) BS07 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709929 8xmc:B (3.1) BS01 rna N/A GO:0000418 ... Q9LK40 N/A
    709930 8xmc:B (3.1) BS02 dna N/A GO:0000418 ... Q9LK40 N/A
    709931 8xmc:B (3.1) BS03 ZN N/A GO:0000418 ... Q9LK40 N/A
    709932 8xmc:C (3.1) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    709933 8xmd:A (3.4) BS01 dna N/A GO:0000418 ... Q9LQ02 N/A
    709934 8xmd:A (3.4) BS02 rna N/A GO:0000418 ... Q9LQ02 N/A
    709935 8xmd:A (3.4) BS03 dna N/A GO:0000418 ... Q9LQ02 N/A
    709936 8xmd:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709937 8xmd:A (3.4) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    709938 8xmd:A (3.4) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709939 8xmd:A (3.4) BS07 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709940 8xmd:B (3.4) BS01 rna N/A GO:0000418 ... Q9LK40 N/A
    709941 8xmd:B (3.4) BS02 dna N/A GO:0000418 ... Q9LK40 N/A
    709942 8xmd:B (3.4) BS03 ZN N/A GO:0000418 ... Q9LK40 N/A
    709943 8xmd:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    709944 8xme:A (3.1) BS01 rna N/A GO:0000418 ... Q9LQ02 N/A
    709945 8xme:A (3.1) BS02 dna N/A GO:0000418 ... Q9LQ02 N/A
    709946 8xme:A (3.1) BS03 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709947 8xme:A (3.1) BS04 MG N/A GO:0000418 ... Q9LQ02 N/A
    709948 8xme:A (3.1) BS05 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709949 8xme:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    709950 8xme:B (3.1) BS01 dna N/A GO:0000418 ... Q9LK40 N/A
    709951 8xme:B (3.1) BS02 rna N/A GO:0000418 ... Q9LK40 N/A
    709952 8xme:B (3.1) BS03 dna N/A GO:0000418 ... Q9LK40 N/A
    709953 8xmh:A (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709954 8xmh:B (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709955 8xmh:C (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709956 8xmh:D (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709957 8xmh:E (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709958 8xmh:F (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709959 8xmh:G (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709960 8xmh:H (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    709961 8xmi:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709962 8xmi:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709963 8xmi:C (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709964 8xmi:D (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709965 8xmi:E (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709966 8xmi:F (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709967 8xmi:G (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709968 8xmi:H (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    709969 8xmm:A (2.89) BS01 CLR ? GO:0001518 ... Q15858 38381792
    709970 8xmm:A (2.89) BS02 LPE ? GO:0001518 ... Q15858 38381792
    709971 8xmm:A (2.89) BS03 1PW ? GO:0001518 ... Q15858 38381792
    709972 8xmm:A (2.89) BS04 LPE ? GO:0001518 ... Q15858 38381792
    709973 8xmm:A (2.89) BS05 LPE ? GO:0001518 ... Q15858 38381792
    709974 8xmm:A (2.89) BS06 LPE ? GO:0001518 ... Q15858 38381792
    709975 8xmm:A (2.89) BS07 LPE ? GO:0001518 ... Q15858 38381792
    709976 8xmm:A (2.89) BS08 LPE ? GO:0001518 ... Q15858 38381792
    709977 8xmm:A (2.89) BS09 P5S ? GO:0001518 ... Q15858 38381792
    709978 8xmn:A (3.37) BS01 LPE ? GO:0001518 ... Q15858 38381792
    709979 8xmn:A (3.37) BS02 LPE ? GO:0001518 ... Q15858 38381792
    709980 8xmn:A (3.37) BS03 LPE ? GO:0001518 ... Q15858 38381792
    709981 8xmo:A (3.39) BS01 LPE ? GO:0001518 ... Q15858 38381792
    709982 8xmo:A (3.39) BS02 LPE ? GO:0001518 ... Q15858 38381792
    709983 8xmo:A (3.39) BS03 LPE ? GO:0001518 ... Q15858 38381792
    709984 8xn6:A (2.4) BS01 ANP 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    709985 8xn6:A (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    709986 8xn6:B (2.4) BS01 ANP 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    709987 8xn6:B (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    709988 8xn7:A (2.65) BS01 A1LVT 2.7.11.1 GO:0004672 ... Q92918 38479166
    709989 8xn7:B (2.65) BS01 A1LVT 2.7.11.1 GO:0004672 ... Q92918 38479166
    709990 8xn8:A (1.95) BS01 ADP 2.7.10.2 GO:0004672 ... P05480 N/A
    709991 8xn8:A (1.95) BS02 MG 2.7.10.2 GO:0004672 ... P05480 N/A
    709992 8xo9:A (3.2) BS01 E5E ? GO:0022857 ... Q05940 N/A
    709993 8xoa:A (3.03) BS01 WRF ? GO:0022857 ... Q05940 N/A
    709994 8xof:R (2.6) BS01 A1LVW ? GO:0000139 ... Q99527 38744981
    709995 8xok:A (2.84) BS01 DU0 N/A GO:0001409 ... O15439 38886124
    709996 8xok:A (2.84) BS02 DU0 N/A GO:0001409 ... O15439 38886124
    709997 8xok:A (2.84) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    709998 8xok:A (2.84) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    709999 8xok:A (2.84) BS05 DU0 N/A GO:0001409 ... O15439 38886124
    710000 8xok:A (2.84) BS06 DU0 N/A GO:0001409 ... O15439 38886124
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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