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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20601 1jv2:A (3.1) BS02 CA ? GO:0001525 ... P06756 11546839
    20602 1jv2:A (3.1) BS03 CA ? GO:0001525 ... P06756 11546839
    20603 1jv2:A (3.1) BS04 CA ? GO:0001525 ... P06756 11546839
    20604 1jv2:A (3.1) BS05 CA ? GO:0001525 ... P06756 11546839
    20605 1jv2:B (3.1) BS01 CA ? GO:0001618 ... P05106 11546839
    20606 1jv3:A (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    20607 1jv3:B (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    20608 1jv4:A (1.75) BS01 TZL ? GO:0003674 ... P11589 11717500
    20609 1jv6:A (2.0) BS01 RET ? GO:0005886 ... P02945 11676543
    20610 1jv7:A (2.25) BS01 RET ? GO:0005216 ... P02945 11676543
    20611 1jvd:A (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    20612 1jvd:B (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    20613 1jvg:A (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    20614 1jvg:B (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    20615 1jvi:A (2.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    20616 1jvi:A (2.2) BS02 RHC 4.4.1.21 GO:0005506 ... O34667 11601850
    20617 1jvj:A (1.73) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 11870868
    20618 1jvn:B (2.1) BS01 POP 3.5.1.2
    4.3.2.10
    GO:0000105 ... P33734 11591353
    20619 1jvp:P (1.53) BS01 89E 2.7.11.22 GO:0000082 ... P24941 11755359
    20620 1jvq:I (2.6) BS01 peptide ? GO:0002020 ... P01008 15342247
    20621 1jvq:I (2.6) BS02 peptide ? GO:0002020 ... P01008 15342247
    20622 1jvs:A (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    20623 1jvs:A (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    20624 1jvs:B (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    20625 1jvs:B (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    20626 1jvu:A (1.78) BS01 C2P 4.6.1.18 GO:0003676 ... P61823 11746706 PDBbind: -logKd/Ki=5.15, Ki=7uM
    BindingDB: Ki=7000nM
    20627 1jvx:A (2.5) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    20628 1jvx:A (2.5) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    20629 1jvy:A (1.9) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    20630 1jvy:A (1.9) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    20631 1jvz:A (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    20632 1jvz:B (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    20633 1jw0:B (2.5) BS01 GUA 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    20634 1jw1:A (4.0) BS01 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    20635 1jw1:A (4.0) BS02 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    20636 1jw5:A (2.0) BS01 GLC ? GO:0005515 ... P0AEX9 11790091
    20637 1jw5:A (2.0) BS02 GLC ? GO:0005515 ... P0AEX9 11790091
    20638 1jw8:A (1.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17680690
    20639 1jw9:B (1.7) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    20640 1jwa:B (2.9) BS01 ATP 2.7.7.80 GO:0004792 ... P12282 11713534
    20641 1jwb:B (2.1) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    20642 1jwb:B (2.1) BS02 AMP 2.7.7.80 GO:0004792 ... P12282 11713534
    20643 1jwg:A (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    20644 1jwg:B (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    20645 1jwh:A (3.1) BS01 ANP 2.7.11.1 GO:0004672 ... P68400 11574463
    20646 1jwh:C (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    20647 1jwh:D (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    20648 1jwj:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    20649 1jwj:A (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    20650 1jwj:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    20651 1jwj:B (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    20652 1jwk:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    20653 1jwk:A (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    20654 1jwk:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    20655 1jwk:B (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    20656 1jwl:A (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    20657 1jwl:A (4.0) BS02 NPF ? GO:0000976 ... P03023 11580238
    20658 1jwl:B (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    20659 1jwl:B (4.0) BS02 dna ? GO:0000976 ... P03023 11580238
    20660 1jwl:B (4.0) BS03 NPF ? GO:0000976 ... P03023 11580238
    20661 1jwl:C (4.0) BS01 NPF ? GO:0000976 ... P03023 11580238
    20662 1jwm:A (2.7) BS01 peptide ? GO:0006955 ... P01903 12962633
    20663 1jwm:B (2.7) BS01 peptide ? GO:0006955 ... P01911 12962633
    20664 1jwn:A (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    20665 1jwn:A (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    20666 1jwn:B (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    20667 1jwn:B (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    20668 1jwn:C (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    20669 1jwn:C (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    20670 1jwn:D (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    20671 1jwn:D (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    20672 1jwq:A (1.8) BS01 ZN 3.5.1.28 GO:0008745 ... Q9LCR3 N/A
    20673 1jws:A (2.6) BS01 peptide ? GO:0006955 ... P01903 12962633
    20674 1jws:B (2.6) BS01 peptide ? GO:0006955 ... P01911 12962633
    20675 1jwt:A (2.5) BS01 BLI 3.4.21.5 GO:0004252 ... P00734 11720865 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    20676 1jwu:A (2.3) BS01 peptide ? GO:0006955 ... P01903 12962633
    20677 1jwu:B (2.3) BS01 peptide ? GO:0006955 ... P01911 12962633
    20678 1jwv:A (1.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 12079336
    20679 1jwz:A (1.8) BS01 105 3.5.2.6 GO:0005515 ... P62593 12079336
    20680 1jx0:A (2.85) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    20681 1jx1:C (2.3) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    20682 1jx4:A (1.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20683 1jx4:A (1.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20684 1jx4:A (1.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20685 1jx4:A (1.7) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20686 1jx4:A (1.7) BS05 ADI 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20687 1jx9:B (2.28) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    20688 1jxa:A (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    20689 1jxa:B (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    20690 1jxi:A (2.64) BS01 HMH 2.7.1.49
    2.7.4.7
    GO:0003824 ... P55882 11839308
    20691 1jxi:B (2.64) BS01 HMH 2.7.1.49
    2.7.4.7
    GO:0003824 ... P55882 11839308
    20692 1jxj:A (1.99) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    20693 1jxk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    20694 1jxl:A (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20695 1jxl:A (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20696 1jxl:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20697 1jxl:A (2.1) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20698 1jxl:A (2.1) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20699 1jxl:A (2.1) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20700 1jxl:A (2.1) BS07 DG3 2.7.7.7 GO:0000287 ... Q97W02 11595188
    20701 1jxp:A (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    20702 1jxp:A (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    20703 1jxp:B (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    20704 1jxp:B (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    20705 1jxq:A (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    20706 1jxq:C (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    20707 1jxz:A (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20708 1jxz:A (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20709 1jxz:A (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20710 1jxz:B (1.9) BS01 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20711 1jxz:B (1.9) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20712 1jxz:B (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20713 1jxz:C (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20714 1jxz:C (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    20715 1jy7:A (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    20716 1jy7:B (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    20717 1jy7:C (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    20718 1jy7:D (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    20719 1jy7:P (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    20720 1jy7:Q (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    20721 1jy7:R (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    20722 1jy7:S (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    20723 1jy7:U (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    20724 1jy7:V (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    20725 1jy7:W (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    20726 1jy7:X (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    20727 1jy8:A (2.5) BS01 ZN 4.6.1.12 GO:0005515 ... P62617 11829504
    20728 1jy8:A (2.5) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 11829504
    20729 1jy8:A (2.5) BS03 CDI 4.6.1.12 GO:0005515 ... P62617 11829504
    20730 1jyc:A (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    20731 1jyc:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    20732 1jyc:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    20733 1jyc:B (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    20734 1jyc:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    20735 1jyc:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    20736 1jyc:C (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    20737 1jyc:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    20738 1jyc:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    20739 1jyc:D (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    20740 1jyc:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    20741 1jyc:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    20742 1jyi:A (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    20743 1jyi:A (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    20744 1jyi:A (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    20745 1jyi:B (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    20746 1jyi:B (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    20747 1jyi:B (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    20748 1jyi:C (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    20749 1jyi:C (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    20750 1jyi:C (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    20751 1jyi:D (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    20752 1jyi:D (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    20753 1jyi:D (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    20754 1jyl:A (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20755 1jyl:A (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20756 1jyl:B (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20757 1jyl:B (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20758 1jyl:C (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20759 1jyl:C (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20760 1jyl:C (2.4) BS03 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20761 1jyl:D (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20762 1jyl:D (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    20763 1jyn:A (1.8) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 11732897
    20764 1jyn:A (1.8) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20765 1jyn:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20766 1jyn:A (1.8) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20767 1jyn:A (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20768 1jyn:A (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20769 1jyn:A (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20770 1jyn:A (1.8) BS08 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20771 1jyn:B (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20772 1jyn:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20773 1jyn:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20774 1jyn:B (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20775 1jyn:B (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20776 1jyn:B (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20777 1jyn:B (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20778 1jyn:C (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20779 1jyn:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20780 1jyn:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20781 1jyn:C (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20782 1jyn:C (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20783 1jyn:C (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20784 1jyn:C (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20785 1jyn:D (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    20786 1jyn:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20787 1jyn:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20788 1jyn:D (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20789 1jyn:D (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20790 1jyn:D (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    20791 1jys:A (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    20792 1jys:B (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    20793 1jyv:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20794 1jyv:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20795 1jyv:A (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20796 1jyv:A (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20797 1jyv:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20798 1jyv:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    20799 1jyv:B (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    20800 1jyv:B (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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