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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 1ayk:A (-1.00) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    1802 1ayk:A (-1.00) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    1803 1ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 9484219
    1804 1ayl:A (1.8) BS01 OXL 4.1.1.49 GO:0000287 ... P22259 8599762
    1805 1ayl:A (1.8) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 8599762
    1806 1ayp:A (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1807 1ayp:A (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1808 1ayp:A (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    1809 1ayp:B (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1810 1ayp:B (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1811 1ayp:B (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    1812 1ayp:C (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1813 1ayp:C (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1814 1ayp:C (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    1815 1ayp:D (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1816 1ayp:D (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1817 1ayp:D (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    1818 1ayp:E (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1819 1ayp:E (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1820 1ayp:E (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    1821 1ayp:F (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1822 1ayp:F (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    1823 1ayp:F (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    1824 1ayu:A (2.2) BS01 INA 3.4.22.38 GO:0006508 ... P43235 9405598 PDBbind: -logKd/Ki=9.15, Ki=0.7nM
    BindingDB: Ki=0.7nM
    1825 1ayv:A (2.3) BS01 IN6 3.4.22.38 GO:0006508 ... P43235 9405598 PDBbind: -logKd/Ki=8.00, Ki=10nM
    BindingDB: Ki=10.0nM
    1826 1ayw:A (2.4) BS01 IN3 3.4.22.38 GO:0006508 ... P43235 9405598 BindingDB: Ki=27nM
    1827 1az0:A (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    1828 1az0:A (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    1829 1az0:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    1830 1az0:B (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    1831 1az0:B (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    1832 1az0:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    1833 1az1:A (1.8) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 9405046
    1834 1az1:A (1.8) BS02 ALR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 9405046 BindingDB: IC50=79000nM, Ki=2000nM
    1835 1az1:A (1.8) BS03 ALR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 9405046 BindingDB: IC50=79000nM, Ki=2000nM
    1836 1az2:A (2.9) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 9405046
    1837 1az8:A (1.8) BS01 IN4 3.4.21.4 GO:0004175 ... P00760 N/A
    1838 1azd:A (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    1839 1azd:A (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    1840 1azd:B (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    1841 1azd:B (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    1842 1azd:C (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    1843 1azd:C (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    1844 1azd:D (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    1845 1azd:D (3.0) BS02 MN ? GO:0005537 ... P55915 9094437
    1846 1azf:A (1.8) BS01 BR 3.2.1.17 GO:0003796 ... P00698 9757106
    1847 1azi:A (2.0) BS01 AZI 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 9576852
    1848 1azi:A (2.0) BS02 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 9576852
    1849 1azm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 7932756
    1850 1azm:A (2.0) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 7932756 PDBbind: -logKd/Ki=6.10, Ki=0.8uM
    BindingDB: Ki=250nM, Kd=1400nM, IC50=5.8nM
    1851 1azs:A (2.3) BS01 FKP 4.6.1.1 GO:0009190 ... P30803 9417641
    1852 1azs:C (2.3) BS01 MG ? GO:0003924 ... P04896 9417641
    1853 1azs:C (2.3) BS02 GSP ? GO:0003924 ... P04896 9417641
    1854 1azt:A (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    1855 1azt:A (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    1856 1azt:B (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    1857 1azt:B (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    1858 1azv:A (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    1859 1azv:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    1860 1azv:B (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    1861 1azv:B (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    1862 1azx:I (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    1863 1azx:I (2.9) BS02 GU6 ? GO:0002020 ... P01008 9405673
    1864 1azx:I (2.9) BS03 GU1 ? GO:0002020 ... P01008 9405673
    1865 1azx:I (2.9) BS04 Z9H ? GO:0002020 ... P01008 9405673
    1866 1azx:L (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    1867 1azx:L (2.9) BS02 Z9K ? GO:0002020 ... P01008 9405673
    1868 1azx:L (2.9) BS03 GU6 ? GO:0002020 ... P01008 9405673
    1869 1azx:L (2.9) BS04 GU1 ? GO:0002020 ... P01008 9405673
    1870 1azx:L (2.9) BS05 Z9H ? GO:0002020 ... P01008 9405673
    1871 1b01:A (2.56) BS01 dna ? GO:0003677 ... P13920 9857196
    1872 1b01:A (2.56) BS02 dna ? GO:0003677 ... P13920 9857196
    1873 1b01:B (2.56) BS01 dna ? GO:0003677 ... P13920 9857196
    1874 1b01:B (2.56) BS02 dna ? GO:0003677 ... P13920 9857196
    1875 1b02:A (2.5) BS01 UFP 2.1.1.45 GO:0004799 ... P0CI79 10091656
    1876 1b02:A (2.5) BS02 C2F 2.1.1.45 GO:0004799 ... P0CI79 10091656
    1877 1b05:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    1878 1b06:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1879 1b06:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1880 1b06:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1881 1b06:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1882 1b06:E (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1883 1b06:F (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1884 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1885 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1886 1b09:A (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1887 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1888 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1889 1b09:B (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1890 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1891 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1892 1b09:C (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1893 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1894 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1895 1b09:D (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1896 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1897 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1898 1b09:E (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1899 1b0b:A (1.43) BS01 CYN ? GO:0005576 ... P41260 10423453
    1900 1b0b:A (1.43) BS02 HEM ? GO:0005576 ... P41260 10423453
    1901 1b0d:A (1.84) BS01 TSU 3.2.1.17 GO:0003796 ... P00698 11418760
    1902 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    1903 1b0e:A (1.8) BS02 SEI 3.4.21.36 GO:0004252 ... P00772 9651152
    1904 1b0f:A (3.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 9651152
    1905 1b0f:A (3.0) BS02 SEI 3.4.21.37 GO:0000122 ... P08246 9651152 PDBbind: -logKd/Ki=7.70, Ki=20nM
    BindingDB: Ki=25nM
    1906 1b0h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    1907 1b0i:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9862804
    1908 1b0j:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    1909 1b0k:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    1910 1b0k:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    1911 1b0k:A (2.5) BS03 O 4.2.1.3 GO:0003994 ... P16276 10631981
    1912 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    1913 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    1914 1b0l:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    1915 1b0l:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    1916 1b0m:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    1917 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    1918 1b0n:A (1.9) BS01 ZN ? GO:0003677 ... P06533 9799632
    1919 1b0n:A (1.9) BS02 ZN ? GO:0003677 ... P06533 9799632
    1920 1b0n:A (1.9) BS03 ZN ? GO:0003677 ... P06533 9799632
    1921 1b0n:B (1.9) BS01 ZN ? GO:0006355 ... P23308 9799632
    1922 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    1923 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    1924 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1925 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1926 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1927 1b0p:A (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    1928 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    1929 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    1930 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1931 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1932 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1933 1b0p:B (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    1934 1b0u:A (1.5) BS01 ATP 7.4.2.1 GO:0003333 ... P02915 9872322
    1935 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    1936 1b11:A (1.9) BS01 3TL 2.7.7.-
    2.7.7.49
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.-
    3.6.1.23    		 GO:0004190 ... P16088 10651036 MOAD: Ki=41nM
    PDBbind: -logKd/Ki=7.39, Ki=41nM
    1937 1b12:A (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1938 1b12:B (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1939 1b12:C (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1940 1b12:D (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1941 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    1942 1b14:A (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    1943 1b14:B (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    1944 1b15:A (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    1945 1b15:B (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    1946 1b16:A (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    1947 1b16:B (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    1948 1b1b:A (2.6) BS01 ZN ? GO:0003677 ... P9WMH1 9887269
    1949 1b1b:A (2.6) BS02 ZN ? GO:0003677 ... P9WMH1 9887269
    1950 1b1h:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10422831
    1951 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    1952 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    1953 1b1x:A (2.62) BS03 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    1954 1b1x:A (2.62) BS04 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    1955 1b1y:A (2.5) BS01 BGC 3.2.1.2 GO:0000272 ... P16098 9918723
    1956 1b1y:A (2.5) BS02 GLC 3.2.1.2 GO:0000272 ... P16098 9918723
    1957 1b23:P (2.6) BS01 rna ? GO:0003746 ... Q01698 10368282
    1958 1b23:P (2.6) BS02 CYS ? GO:0003746 ... Q01698 10368282
    1959 1b23:P (2.6) BS03 MG ? GO:0003746 ... Q01698 10368282
    1960 1b23:P (2.6) BS04 GNP ? GO:0003746 ... Q01698 10368282
    1961 1b2h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    1962 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    1963 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    1964 1b2l:A (1.6) BS02 NDC 1.1.1.1 GO:0004022 ... P10807 10366509
    1965 1b2l:A (1.6) BS03 CYH 1.1.1.1 GO:0004022 ... P10807 10366509
    1966 1b2m:A (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    1967 1b2m:B (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    1968 1b2m:B (2.0) BS02 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    1969 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    1970 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    1971 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    1972 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    1973 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    1974 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    1975 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    1976 1b30:A (2.25) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1977 1b30:A (2.25) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1978 1b32:A (1.75) BS01 peptide ? GO:0015031 ... P06202 10438628
    1979 1b33:A (2.3) BS01 BLA ? GO:0009579 ... P00315 9990029
    1980 1b33:B (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    1981 1b33:F (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    1982 1b33:N (2.3) BS01 BLA ? GO:0009579 ... P20116 9990029
    1983 1b37:A (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    1984 1b37:B (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    1985 1b37:C (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    1986 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    1987 1b38:A (2.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.254uM
    PDBbind: -logKd/Ki=6.60, Kd=0.254uM
    1988 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    1989 1b39:A (2.1) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.12uM
    PDBbind: -logKd/Ki=6.92, Kd=0.120uM
    1990 1b3a:A (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    1991 1b3a:B (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    1992 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1993 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1994 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1995 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1996 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1997 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1998 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1999 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2000 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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